STOMP Sparse Vegetation Evapotranspiration Model for the Water-Air-Energy Operational Mode
Energy Technology Data Exchange (ETDEWEB)
Ward, Anderson L.; White, Mark D.; Freeman, Eugene J.; Zhang, Z. F.
2005-09-15
The Water-Air-Energy (WAE) Operational Mode of the Subsurface Transport Over Multiple Phases (STOMP) numerical simulator solves the coupled conservation equations for water mass, air mass, and thermal energy in multiple dimensions. This addendum describes the theory, input file formatting, and application of a soil-vegetation-atmosphere transfer (SVAT) scheme for STOMP that is based on a sparse vegetation evapotranspiration model. The SVAT scheme is implemented as a boundary condition on the upper surface of the computational domain and has capabilities for simulating evaporation from bare surfaces as well as evapotranspiration from sparsely vegetated surfaces populated with single or multiple plant species in response to meteorological forcings. With this extension, the model calculates water mass, air mass and thermal energy across a boundary surface in addition to root-water transport between the subsurface and atmosphere. This mode represents the barrier extension of the WAE mode and is designated as STOMP-WAE-B. Input for STOMP-WAE-B is specified via three input cards and include: atmospheric conditions through the Atmospheric Conditions Card; time-invariant plant species data through the Plant Properties Card; and time varying plant species data through the Boundary Conditions Card. Two optional cards, the Observed Data and UCODE Control Cards allow use of STOMP-WAE with UCODE in an inverse mode to estimate model parameters. STOMP-WAE was validated by solving a number of test problems from the literature that included experimental observations as well as analytical or numerical solutions. Several of the UNSAT-H verification problems are included along with a benchmark simulation derived from a recently published intercode comparison for barrier design tools. Results show that STOMP is able to meet, and in most cases, exceed performance of other commonly used simulation codes without having to resort to may of their simplifying assumptions. Use of the fully
STOMP Subsurface Transport Over Multiple Phases: STOMP-CO2 and STOMP-CO2e Guide: Version 1.0
Energy Technology Data Exchange (ETDEWEB)
White, Mark D.; Bacon, Diana H.; McGrail, B. Peter; Watson, David J.; White, Signe K.; Zhang, Z. F.
2012-04-03
This STOMP (Subsurface Transport Over Multiple Phases) guide document describes the theory, use, and application of the STOMP-CO2 and STOMP-CO2e operational modes. These operational modes of the STOMP simulator are configured to solve problems involving the sequestration of CO2 in geologic saline reservoirs. STOMP-CO2 is the isothermal version and STOMP-CO2e is the nonisothermal version. These core operational modes solve the governing conservation equations for component flow and transport through geologic media; where, the STOMP-CO2 components are water, CO2 and salt and the STOMP-CO2e operational mode also includes an energy conservation equation. Geochemistry can be included in the problem solution via the ECKEChem (Equilibrium-Conservation-Kinetic-Equation Chemistry) module, and geomechanics via the EPRMech (Elastic-Plastic-Rock Mechanics) module. This addendum is designed to provide the new user with a full guide for the core capabilities of the STOMP-CO2 and -CO2e simulators, and to provide the experienced user with a quick reference on implementing features. Several benchmark problems are provided in this addendum, which serve as starting points for developing inputs for more complex problems and as demonstrations of the simulator’s capabilities.
STOMP, Subsurface Transport Over Multiple Phases, theory guide
International Nuclear Information System (INIS)
White, M.D.; Oostrom, M.
1996-10-01
This guide describes the simulator's governing equations, constitutive functions and numerical solution algorithms of the STOMP (Subsurface Transport Over Multiple Phases) simulator, a scientific tool for analyzing multiple phase subsurface flow and transport. The STOMP simulator's fundamental purpose is to produce numerical predictions of thermal and hydrologic flow and transport phenomena in variably saturated subsurface environments, which are contaminated with volatile or nonvolatile organic compounds. Auxiliary applications include numerical predictions of solute transport processes including radioactive chain decay processes. In writing these guides for the STOMP simulator, the authors have assumed that the reader comprehends concepts and theories associated with multiple-phase hydrology, heat transfer, thermodynamics, radioactive chain decay, and nonhysteretic relative permeability, saturation-capillary pressure constitutive functions. The authors further assume that the reader is familiar with the computing environment on which they plan to compile and execute the STOMP simulator. The STOMP simulator requires an ANSI FORTRAN 77 compiler to generate an executable code. The memory requirements for executing the simulator are dependent on the complexity of physical system to be modeled and the size and dimensionality of the computational domain. Likewise execution speed depends on the problem complexity, size and dimensionality of the computational domain, and computer performance. One-dimensional problems of moderate complexity can be solved on conventional desktop computers, but multidimensional problems involving complex flow and transport phenomena typically require the power and memory capabilities of workstation or mainframe type computer systems
STOMP Subsurface Transport Over Multiple Phases, Version 4.0, User’s Guide
Energy Technology Data Exchange (ETDEWEB)
White, Mark D.; Oostrom, Martinus
2006-06-09
This guide describes the general use, input file formatting, compilation and execution of the STOMP (Subsurface Transport Over Multiple Phases) simulator, a scientific tool for analyzing single and multiple phase subsurface flow and transport. A description of the simulator’s governing equations, constitutive functions and numerical solution algorithms are provided in a companion theory guide. In writing these guides for the STOMP simulator, the authors have assumed that the reader comprehends concepts and theories associated with multiple-phase hydrology, heat transfer, thermodynamics, radioactive chain decay, and relative permeability-saturation-capillary pressure constitutive relations. The authors further assume that the reader is familiar with the computing environment on which they plan to compile and execute the STOMP simulator. Source codes for the sequential versions of the simulator are available in pure FORTRAN 77 or mixed FORTRAN 77/90 forms. The pure FORTRAN 77 source code form requires a parameters file to define the memory requirements for the array elements. The mixed FORTRAN 77/90 form of the source code uses dynamic memory allocation to define memory requirements, based on a FORTRAN 90 preprocessor STEP, that reads the input files. The simulator utilizes a variable source code configuration, which allows the execution memory and speed to be tailored to the problem specifics, and essentially requires that the source code be assembled and compiled through a software maintenance utility. The memory requirements for executing the simulator are dependent on the complexity of physical system to be modeled and the size and dimensionality of the computational domain. Likewise execution speed depends on the problem complexity, size and dimensionality of the computational domain, and computer performance. Selected operational modes of the STOMP simulator are available for scalable execution on multiple processor (i.e., parallel) computers. These versions
Long-term outcomes of the Stop Traumatic OASI Morbidity Project (STOMP).
Basu, Maya; Smith, Dot
2018-06-09
To evaluate long-term sustainability of the Stop Traumatic OASI Morbidity Project (STOMP) in reducing the incidence of obstetric anal sphincter injury (OASI). A prospective observational study of women undergoing vaginal delivery at a UK district general hospital between September 1, 2014, and February 28, 2017. The principles of STOMP involve encouraging upright positioning, verbal coaching to avoid expulsive pushing and to slow down delivery, and tactile support to the vertex to judge speed and slow down delivery. After a training period, STOMP was implemented for all vaginal deliveries. Clinical and demographic data on women affected by OASI were collected across a 30-month period. The primary outcome measure was the incidence of OASI. There were 8782 vaginal deliveries during the 30-month period after implementation of STOMP. There was a significant decrease in the mean incidence of OASI relative to the 9 months before implementation (P<0.001). There was a significant decrease in the incidence of OASI for both spontaneous vaginal and instrumental deliveries (both P<0.05). There was no change in the frequency of episiotomy. Implementation of STOMP led to a significant decrease in OASI, confirming the sustainability of this approach to improve outcomes. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.
Integrated Disposal Facility FY 2016: ILAW Verification and Validation of the eSTOMP Simulator
Energy Technology Data Exchange (ETDEWEB)
Freedman, Vicky L. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Bacon, Diana H. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Fang, Yilin [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
2016-05-13
This document describes two sets of simulations carried out to further verify and validate the eSTOMP simulator. In this report, a distinction is made between verification and validation, and the focus is on verifying eSTOMP through a series of published benchmarks on cementitious wastes, and validating eSTOMP based on a lysimeter experiment for the glassified waste. These activities are carried out within the context of a scientific view of validation that asserts that models can only be invalidated, and that model validation (and verification) is a subjective assessment.
STOMP Subsurface Transport Over Multiple Phases: User's guide
International Nuclear Information System (INIS)
White, M.D.; Oostrom, M.
1997-10-01
The U.S. Department of Energy, through the Office of Technology Development, has requested the demonstration of remediation technologies for the cleanup of volatile organic compounds and associated radionuclides within the soil and groundwater at arid sites. This demonstration program, called the VOC-Arid Soils Integrated Demonstration Program (Arid-ID), has been initially directed at a volume of unsaturated and saturated soil contaminated with carbon tetrachloride, on the Hanford Site near Richland, Washington. A principal subtask of the Arid-ID program involves the development of an integrated engineering simulator for evaluating the effectiveness and efficiency of various remediation technologies. The engineering simulator''s intended users include scientists and engineers who are investigating soil physics phenomena associated with remediation technologies. Principal design goals for the engineer simulator include broad applicability, verified algorithms, quality assurance controls, and validated simulations against laboratory and field-scale experiments. An important goal for the simulator development subtask involves the ability to scale laboratory and field-scale experiments to full-scale remediation technologies, and to transfer acquired technology to other arid sites. The STOMP (Subsurface Transport Over Multiple Phases) simulator has been developed by the Pacific Northwest National Laboratory for modeling remediation technologies. Information on the use, application, and theoretical basis of the STOMP simulator theory and discussions on the governing equations, constitutive relations, and numerical solution algorithms for the STOMP simulator
STOMP Subsurface Transport Over Multiple Phases: Application guide
International Nuclear Information System (INIS)
Nichols, W.E.; Aimo, N.J.; Oostrom, M.; White, M.D.
1997-09-01
The U.S. Department of Energy (DOE), through the Office of Technology Development, has requested the demonstration of remediation technologies for the cleanup of volatile organic compounds and associated radionuclides within the soil and ground water at arid sites. This demonstration program, called the VOC-Arid Soils Integrated Demonstrated Program (Arid-ID), has been initially directed at a volume of unsaturated and saturated soil contaminated with carbon tetrachloride on the Hanford Site near Richland, Washington. A principal subtask of the Arid-ID program involves the development of an integrated engineering simulator for evaluating the effectiveness and efficiency of various remediation technologies. The engineering simulator''s intended users include scientists and engineers who are investigating soil physics phenomena associated with remediation technologies. Principal design goals for the engineering simulator include broad applicability, verified algorithms, quality assurance controls, and validated simulations against laboratory and field-scale experiments. An important goal for the simulator development subtask involves the ability to scale laboratory and field-scale experiments to full-scale remediation technologies, and to transfer acquired technology to other arid sites. The STOMP (Subsurface Transport Over Multiple Phases) simulator has been developed by the Pacific Northwest Laboratory for modeling remediation technologies. Information on the use, application, and theoretical basis of the STOMP simulator are documented in three companion guide guides. This document, the Application Guide, provides a suite of example applications of the STOMP simulator
Energy budgets and resistances to energy transport in sparsely vegetated rangeland
Nichols, W.D.
1992-01-01
Partitioning available energy between plants and bare soil in sparsely vegetated rangelands will allow hydrologists and others to gain a greater understanding of water use by native vegetation, especially phreatophytes. Standard methods of conducting energy budget studies result in measurements of latent and sensible heat fluxes above the plant canopy which therefore include the energy fluxes from both the canopy and the soil. One-dimensional theoretical numerical models have been proposed recently for the partitioning of energy in sparse crops. Bowen ratio and other micrometeorological data collected over phreatophytes growing in areas of shallow ground water in central Nevada were used to evaluate the feasibility of using these models, which are based on surface and within-canopy aerodynamic resistances, to determine heat and water vapor transport in sparsely vegetated rangelands. The models appear to provide reasonably good estimates of sensible heat flux from the soil and latent heat flux from the canopy. Estimates of latent heat flux from the soil were less satisfactory. Sensible heat flux from the canopy was not well predicted by the present resistance formulations. Also, estimates of total above-canopy fluxes were not satisfactory when using a single value for above-canopy bulk aerodynamic resistance. ?? 1992.
Wu, Jun-Jun; Gao, Zhi-Hai; Li, Zeng-Yuan; Wang, Hong-Yan; Pang, Yong; Sun, Bin; Li, Chang-Long; Li, Xu-Zhi; Zhang, Jiu-Xing
2014-03-01
In order to estimate the sparse vegetation information accurately in desertification region, taking southeast of Sunite Right Banner, Inner Mongolia, as the test site and Tiangong-1 hyperspectral image as the main data, sparse vegetation coverage and biomass were retrieved based on normalized difference vegetation index (NDVI) and soil adjusted vegetation index (SAVI), combined with the field investigation data. Then the advantages and disadvantages between them were compared. Firstly, the correlation between vegetation indexes and vegetation coverage under different bands combination was analyzed, as well as the biomass. Secondly, the best bands combination was determined when the maximum correlation coefficient turned up between vegetation indexes (VI) and vegetation parameters. It showed that the maximum correlation coefficient between vegetation parameters and NDVI could reach as high as 0.7, while that of SAVI could nearly reach 0.8. The center wavelength of red band in the best bands combination for NDVI was 630nm, and that of the near infrared (NIR) band was 910 nm. Whereas, when the center wavelength was 620 and 920 nm respectively, they were the best combination for SAVI. Finally, the linear regression models were established to retrieve vegetation coverage and biomass based on Tiangong-1 VIs. R2 of all models was more than 0.5, while that of the model based on SAVI was higher than that based on NDVI, especially, the R2 of vegetation coverage retrieve model based on SAVI was as high as 0.59. By intersection validation, the standard errors RMSE based on SAVI models were lower than that of the model based on NDVI. The results showed that the abundant spectral information of Tiangong-1 hyperspectral image can reflect the actual vegetaion condition effectively, and SAVI can estimate the sparse vegetation information more accurately than NDVI in desertification region.
Influence of soil moisture on the modelling of evapotranspiration in sparse vegetation
International Nuclear Information System (INIS)
Villagarcia, L.; Were, A.; Morillas, L.; Garcia, M.; Domingo, F.; Puigdefabregas, J.
2009-01-01
This work analyses the relevance of soil water content (θ) on the estimation of actual evapotranspiration (λE) in sparse vegetated areas. This importance is evaluated through the effect of the θ heterogeneity, both vertical and horizontal (differentiating between bare soil (bs) and soil under vegetation (s)), on λE estimates. A clumped evapotranspiration model (CM) that considers vegetation (p), bs and s as sources of evaporation, was used. This model estimates λE of the whole vegetated area, as well as the contribution of each source. (Author) 11 refs.
Variability of emissivity and surface temperature over a sparsely vegetated surface
International Nuclear Information System (INIS)
Humes, K.S.; Kustas, W.P.; Moran, M.S.; Nichols, W.D.; Weltz, M.A.
1994-01-01
Radiometric surface temperatures obtained from remote sensing measurements are a function of both the physical surface temperature and the effective emissivity of the surface within the band pass of the radiometric measurement. For sparsely vegetated areas, however, a sensor views significant fractions of both bare soil and various vegetation types. In this case the radiometric response of a sensor is a function of the emissivities and kinetic temperatures of various surface elements, the proportion of those surface elements within the field of view of the sensor, and the interaction of radiation emitted from the various surface components. In order to effectively utilize thermal remote sensing data to quantify energy balance components for a sparsely vegetated area, it is important to examine the typical magnitude and degree of variability of emissivity and surface temperature for such surfaces. Surface emissivity measurements and ground and low-altitude-aircraft-based surface temperature measurements (8-13 micrometer band pass) made in conjunction with the Monsoon '90 field experiment were used to evaluate the typical variability of those quantities during the summer rainy season in a semiarid watershed. The average value for thermal band emissivity of the exposed bare soil portions of the surface was found to be approximately 0.96; the average value measured for most of the varieties of desert shrubs present was approximately 0.99. Surface composite emissivity was estimated to be approximately 0.98 for both the grass-dominated and shrub-dominated portions of the watershed. The spatial variability of surface temperature was found to be highly dependent on the spatial scale of integration for the instantaneous field of view (IFOV) of the instrument, the spatial scale of the total area under evaluation, and the time of day
A Modified Sparse Representation Method for Facial Expression Recognition
Directory of Open Access Journals (Sweden)
Wei Wang
2016-01-01
Full Text Available In this paper, we carry on research on a facial expression recognition method, which is based on modified sparse representation recognition (MSRR method. On the first stage, we use Haar-like+LPP to extract feature and reduce dimension. On the second stage, we adopt LC-K-SVD (Label Consistent K-SVD method to train the dictionary, instead of adopting directly the dictionary from samples, and add block dictionary training into the training process. On the third stage, stOMP (stagewise orthogonal matching pursuit method is used to speed up the convergence of OMP (orthogonal matching pursuit. Besides, a dynamic regularization factor is added to iteration process to suppress noises and enhance accuracy. We verify the proposed method from the aspect of training samples, dimension, feature extraction and dimension reduction methods and noises in self-built database and Japan’s JAFFE and CMU’s CK database. Further, we compare this sparse method with classic SVM and RVM and analyze the recognition effect and time efficiency. The result of simulation experiment has shown that the coefficient of MSRR method contains classifying information, which is capable of improving the computing speed and achieving a satisfying recognition result.
Moody, Daniela; Wohlberg, Brendt
2018-01-02
An approach for land cover classification, seasonal and yearly change detection and monitoring, and identification of changes in man-made features may use a clustering of sparse approximations (CoSA) on sparse representations in learned dictionaries. The learned dictionaries may be derived using efficient convolutional sparse coding to build multispectral or hyperspectral, multiresolution dictionaries that are adapted to regional satellite image data. Sparse image representations of images over the learned dictionaries may be used to perform unsupervised k-means clustering into land cover categories. The clustering process behaves as a classifier in detecting real variability. This approach may combine spectral and spatial textural characteristics to detect geologic, vegetative, hydrologic, and man-made features, as well as changes in these features over time.
Moreo, Michael T.; Andraski, Brian J.; Garcia, C. Amanda
2017-08-29
This report documents methodology and results of a study to evaluate groundwater discharge by evapotranspiration (GWET) in sparsely vegetated areas of Amargosa Desert and improve understanding of hydrologic-continuum processes controlling groundwater discharge. Evapotranspiration and GWET rates were computed and characterized at three sites over 2 years using a combination of micrometeorological, unsaturated zone, and stable-isotope measurements. One site (Amargosa Flat Shallow [AFS]) was in a sparse and isolated area of saltgrass (Distichlis spicata) where the depth to groundwater was 3.8 meters (m). The second site (Amargosa Flat Deep [AFD]) was in a sparse cover of predominantly shadscale (Atriplex confertifolia) where the depth to groundwater was 5.3 m. The third site (Amargosa Desert Research Site [ADRS]), selected as a control site where GWET is assumed to be zero, was located in sparse vegetation dominated by creosote bush (Larrea tridentata) where the depth to groundwater was 110 m.Results indicated that capillary rise brought groundwater to within 0.9 m (at AFS) and 3 m (at AFD) of land surface, and that GWET rates were largely controlled by the slow but relatively persistent upward flow of water through the unsaturated zone in response to atmospheric-evaporative demands. Greater GWET at AFS (50 ± 20 millimeters per year [mm/yr]) than at AFD (16 ± 15 mm/yr) corresponded with its shallower depth to the capillary fringe and constantly higher soil-water content. The stable-isotope dataset for hydrogen (δ2H) and oxygen (δ18O) illustrated a broad range of plant-water-uptake scenarios. The AFS saltgrass and AFD shadscale responded to changing environmental conditions and their opportunistic water use included the time- and depth-variable uptake of unsaturated-zone water derived from a combination of groundwater and precipitation. These results can be used to estimate GWET in other areas of Amargosa Desert where hydrologic conditions are similar.
SparseM: A Sparse Matrix Package for R *
Directory of Open Access Journals (Sweden)
Roger Koenker
2003-02-01
Full Text Available SparseM provides some basic R functionality for linear algebra with sparse matrices. Use of the package is illustrated by a family of linear model fitting functions that implement least squares methods for problems with sparse design matrices. Significant performance improvements in memory utilization and computational speed are possible for applications involving large sparse matrices.
Ecohydrological implications of aeolian sediment trapping by sparse vegetation in drylands
Gonzales, Howell B.; Ravi, Sujith; Li, Junran; Sankey, Joel B.
2018-01-01
Aeolian processes are important drivers of ecosystem dynamics in drylands, and important feedbacks exist among aeolian – hydrological processes and vegetation. The trapping of wind-borne sediments by vegetation may result in changes in soil properties beneath the vegetation, which, in turn, can alter hydrological and biogeochemical processes. Despite the relevance of aeolian transport to ecosystem dynamics, the interactions between aeolian transport and vegetation in shaping dryland landscapes where sediment distribution is altered by relatively rapid changes in vegetation composition such as shrub encroachment, is not well understood. Here, we used a computational fluid dynamics (CFD) modeling framework to investigate the sediment trapping efficiencies of vegetation canopies commonly found in a shrub-grass ecotone in the Chihuahuan Desert (New Mexico, USA) and related the results to spatial heterogeneity in soil texture and infiltration measured in the field. A CFD open-source software package was used to simulate aeolian sediment movement through three-dimensional architectural depictions of Creosote shrub (Larrea tridentata) and Black Grama grass (Bouteloua eriopoda) vegetation types. The vegetation structures were created using a computer-aided design software (Blender), with inherent canopy porosities, which were derived using LIDAR (Light Detection and Ranging) measurements of plant canopies. Results show that considerable heterogeneity in infiltration and soil grain size distribution exist between the microsites, with higher infiltration and coarser soil texture under shrubs. Numerical simulations also indicate that the differential trapping of canopies might contribute to the observed heterogeneity in soil texture. In the early stages of encroachment, the shrub canopies, by trapping coarser particles more efficiently, might maintain higher infiltration rates leading to faster development of the microsites (among other factors) with enhanced ecological
Y Yang, M.; Wang, J.; Zhang, Q.
2017-07-01
Vegetation coverage is one of the most important indicators for ecological environment change, and is also an effective index for the assessment of land degradation and desertification. The dry-hot valley regions have sparse surface vegetation, and the spectral information about the vegetation in such regions usually has a weak representation in remote sensing, so there are considerable limitations for applying the commonly-used vegetation index method to calculate the vegetation coverage in the dry-hot valley regions. Therefore, in this paper, Alternating Angle Minimum (AAM) algorithm of deterministic model is adopted for selective endmember for pixel unmixing of MODIS image in order to extract the vegetation coverage, and accuracy test is carried out by the use of the Landsat TM image over the same period. As shown by the results, in the dry-hot valley regions with sparse vegetation, AAM model has a high unmixing accuracy, and the extracted vegetation coverage is close to the actual situation, so it is promising to apply the AAM model to the extraction of vegetation coverage in the dry-hot valley regions.
Banerjee, Abhirup; Maji, Pradipta
2015-12-01
The segmentation of brain MR images into different tissue classes is an important task for automatic image analysis technique, particularly due to the presence of intensity inhomogeneity artifact in MR images. In this regard, this paper presents a novel approach for simultaneous segmentation and bias field correction in brain MR images. It integrates judiciously the concept of rough sets and the merit of a novel probability distribution, called stomped normal (SN) distribution. The intensity distribution of a tissue class is represented by SN distribution, where each tissue class consists of a crisp lower approximation and a probabilistic boundary region. The intensity distribution of brain MR image is modeled as a mixture of finite number of SN distributions and one uniform distribution. The proposed method incorporates both the expectation-maximization and hidden Markov random field frameworks to provide an accurate and robust segmentation. The performance of the proposed approach, along with a comparison with related methods, is demonstrated on a set of synthetic and real brain MR images for different bias fields and noise levels.
Numerical Simulations of Urea Hydrolysis and Calcite Precipitation in Porous Media Using STOMP
International Nuclear Information System (INIS)
Guo, Luanjing; Huang, Hai; Hu, Bill X.
2010-01-01
Subsurface radionuclide and trace metal contaminants throughout the U.S. Department of Energy (DOE) complex pose one of DOE's greatest challenges for long-term stewardship. One promising in situ immobilization approach of these contaminants is engineered mineral (co)precipitation of calcite driven by urea hydrolysis that is catalyzed by enzyme urease. The tight nonlinear coupling among flow, transport, reaction and reaction-induced property changes of media of this approach was studied by reactive transport simulations with systematically increasing level of complexities of reaction network and physical/chemical heterogeneities using a numerical simulator named STOMP. Sensitivity studies on the reaction rates of both urea hydrolysis and calcite precipitation are performed via controlling urease enzyme concentration and precipitation rate constant according to the rate models employed. We have found that the rate of ureolysis is a dominating factor in the amount of precipitated mineral; however, the spatial distribution of the precipitates depends on both rates of ureolysis and calcite precipitation. A maximum 5% reduction in the porosity was observed within the simulation time period of 6 pore volumes in our 1-dimensional (1D) column simulations. When a low permeability inclusion is considered in the 2D simulations, the altered flow fields redistribute mineral forming constituents, leading to a distorted precipitation reaction front. The simulations also indicate that mineral precipitation occurs along the boundary of the low permeability zone, which implies that contaminants in the low permeability zone could be encapsulated and isolated from the flow paths.
Wang, Jim Jing-Yan; Gao, Xin
2014-01-01
Sparse coding approximates the data sample as a sparse linear combination of some basic codewords and uses the sparse codes as new presentations. In this paper, we investigate learning discriminative sparse codes by sparse coding in a semi-supervised manner, where only a few training samples are labeled. By using the manifold structure spanned by the data set of both labeled and unlabeled samples and the constraints provided by the labels of the labeled samples, we learn the variable class labels for all the samples. Furthermore, to improve the discriminative ability of the learned sparse codes, we assume that the class labels could be predicted from the sparse codes directly using a linear classifier. By solving the codebook, sparse codes, class labels and classifier parameters simultaneously in a unified objective function, we develop a semi-supervised sparse coding algorithm. Experiments on two real-world pattern recognition problems demonstrate the advantage of the proposed methods over supervised sparse coding methods on partially labeled data sets.
Wang, Jim Jing-Yan
2014-07-06
Sparse coding approximates the data sample as a sparse linear combination of some basic codewords and uses the sparse codes as new presentations. In this paper, we investigate learning discriminative sparse codes by sparse coding in a semi-supervised manner, where only a few training samples are labeled. By using the manifold structure spanned by the data set of both labeled and unlabeled samples and the constraints provided by the labels of the labeled samples, we learn the variable class labels for all the samples. Furthermore, to improve the discriminative ability of the learned sparse codes, we assume that the class labels could be predicted from the sparse codes directly using a linear classifier. By solving the codebook, sparse codes, class labels and classifier parameters simultaneously in a unified objective function, we develop a semi-supervised sparse coding algorithm. Experiments on two real-world pattern recognition problems demonstrate the advantage of the proposed methods over supervised sparse coding methods on partially labeled data sets.
Soil-geomorphic heterogeneity governs patchy vegetation dynamics at an arid ecotone.
Bestelmeyer, Brandon T; Ward, Judy P; Havstad, Kris M
2006-04-01
Soil properties are well known to affect vegetation, but the role of soil heterogeneity in the patterning of vegetation dynamics is poorly documented. We asked whether the location of an ecotone separating grass-dominated and sparsely vegetated areas reflected only historical variation in degradation or was related to variation in inherent soil properties. We then asked whether changes in the cover and spatial organization of vegetated and bare patches assessed using repeat aerial photography reflected self-organizing dynamics unrelated to soil variation or the stable patterning of soil variation. We found that the present-day ecotone was related to a shift from more weakly to more strongly developed soils. Parts of the ecotone were stable over a 60-year period, but shifts between bare and vegetated states, as well as persistently vegetated and bare states, occurred largely in small (<40 m2) patches throughout the study area. The probability that patches were presently vegetated or bare, as well as the probability that vegetation persisted and/or established over the 60-year period, was negatively related to surface calcium carbonate and positively related to subsurface clay content. Thus, only a fraction of the landscape was susceptible to vegetation change, and the sparsely vegetated area probably featured a higher frequency of susceptible soil patches. Patch dynamics and self-organizing processes can be constrained by subtle (and often unrecognized) soil heterogeneity.
In Defense of Sparse Tracking: Circulant Sparse Tracker
Zhang, Tianzhu; Bibi, Adel Aamer; Ghanem, Bernard
2016-01-01
Sparse representation has been introduced to visual tracking by finding the best target candidate with minimal reconstruction error within the particle filter framework. However, most sparse representation based trackers have high computational cost, less than promising tracking performance, and limited feature representation. To deal with the above issues, we propose a novel circulant sparse tracker (CST), which exploits circulant target templates. Because of the circulant structure property, CST has the following advantages: (1) It can refine and reduce particles using circular shifts of target templates. (2) The optimization can be efficiently solved entirely in the Fourier domain. (3) High dimensional features can be embedded into CST to significantly improve tracking performance without sacrificing much computation time. Both qualitative and quantitative evaluations on challenging benchmark sequences demonstrate that CST performs better than all other sparse trackers and favorably against state-of-the-art methods.
In Defense of Sparse Tracking: Circulant Sparse Tracker
Zhang, Tianzhu
2016-12-13
Sparse representation has been introduced to visual tracking by finding the best target candidate with minimal reconstruction error within the particle filter framework. However, most sparse representation based trackers have high computational cost, less than promising tracking performance, and limited feature representation. To deal with the above issues, we propose a novel circulant sparse tracker (CST), which exploits circulant target templates. Because of the circulant structure property, CST has the following advantages: (1) It can refine and reduce particles using circular shifts of target templates. (2) The optimization can be efficiently solved entirely in the Fourier domain. (3) High dimensional features can be embedded into CST to significantly improve tracking performance without sacrificing much computation time. Both qualitative and quantitative evaluations on challenging benchmark sequences demonstrate that CST performs better than all other sparse trackers and favorably against state-of-the-art methods.
Multispectral imaging of wok fried vegetables
DEFF Research Database (Denmark)
Løje, Hanne; Dissing, Bjørn Skovlund; Clemmensen, Line Katrine Harder
2011-01-01
This paper shows how multispectral images can be used to assess color change over time in wok fried vegetables. We present results where feature selection was performed with sparse methods from the multispectral images to detect the color changes of wok fried carrots and celeriac stored at +5°C...
Zhang, Tianzhu
2015-06-01
Sparse representation has been applied to visual tracking by finding the best target candidate with minimal reconstruction error by use of target templates. However, most sparse representation based trackers only consider holistic or local representations and do not make full use of the intrinsic structure among and inside target candidates, thereby making the representation less effective when similar objects appear or under occlusion. In this paper, we propose a novel Structural Sparse Tracking (SST) algorithm, which not only exploits the intrinsic relationship among target candidates and their local patches to learn their sparse representations jointly, but also preserves the spatial layout structure among the local patches inside each target candidate. We show that our SST algorithm accommodates most existing sparse trackers with the respective merits. Both qualitative and quantitative evaluations on challenging benchmark image sequences demonstrate that the proposed SST algorithm performs favorably against several state-of-the-art methods.
Vegetation Mapping of the Mond Protected Area of Bushehr Provice (SW Iran)
Mehrabian, Ahmadreza; Mahiny, Abdolrassoul Salman; Mostafavi, Hossein; Liaghati, Homan
2010-01-01
The current study is a new approach to vegetation mapping in Iran using remote sensing (RS) and the geographic information system (GIS). One of the most important problems in remote sensing of desert vegetation is that the reflectance from soil and rocks is often much greater than that of sparse vegetation and this makes it difficult to separate out the vegetation signal (Gates et al. 1965); and there is spectral variability within shrubs of the same species (Duncant et al., 1993). These prop...
Suppression of vegetation in LANDSAT ETM+ remote sensing images
Yu, Le; Porwal, Alok; Holden, Eun-Jung; Dentith, Michael
2010-05-01
Vegetation cover is an impediment to the interpretation of multispectral remote sensing images for geological applications, especially in densely vegetated terrains. In order to enhance the underlying geological information in such terrains, it is desirable to suppress the reflectance component of vegetation. One form of spectral unmixing that has been successfully used for vegetation reflectance suppression in multispectral images is called "forced invariance". It is based on segregating components of the reflectance spectrum that are invariant with respect to a specific spectral index such as the NDVI. The forced invariance method uses algorithms such as software defoliation. However, the outputs of software defoliation are single channel data, which are not amenable to geological interpretations. Crippen and Blom (2001) proposed a new forced invariance algorithm that utilizes band statistics, rather than band ratios. The authors demonstrated the effectiveness of their algorithms on a LANDSAT TM scene from Nevada, USA, especially in open canopy areas in mixed and semi-arid terrains. In this presentation, we report the results of our experimentation with this algorithm on a densely to sparsely vegetated Landsat ETM+ scene. We selected a scene (Path 119, Row 39) acquired on 18th July, 2004. Two study areas located around the city of Hangzhou, eastern China were tested. One of them covers uninhabited hilly terrain characterized by low rugged topography, parts of the hills are densely vegetated; another one covers both inhabited urban areas and uninhabited hilly terrain, which is densely vegetated. Crippen and Blom's algorithm is implemented in the following sequential steps: (1) dark pixel correction; (2) vegetation index calculation; (3) estimation of statistical relationship between vegetation index and digital number (DN) values for each band; (4) calculation of a smooth best-fit curve for the above relationships; and finally, (5) selection of a target average DN
Steevens, J.; Schouten, L.J.; Goldbohm, R.A.; Brandt, P.A. van den
2011-01-01
Prospective epidemiologic data on vegetables and fruits consumption and risk of subtypes of esophageal and gastric cancer are sparse. We studied the association between vegetables and fruits consumption and risk of esophageal squamous cell carcinoma (ESCC), esophageal adenocarcinoma (EAC), gastric
CHARACTERISING VEGETATED SURFACES USING MODIS MULTIANGULAR SATELLITE DATA
Directory of Open Access Journals (Sweden)
G. McCamley
2012-07-01
Full Text Available Bidirectional Reflectance Distribution Functions (BRDF seek to represent variations in surface reflectance resulting from changes in a satellite's view and solar illumination angles. BRDF representations have been widely used to assist in the characterisation of vegetation. However BRDF effects are often noisy, difficult to interpret and are the spatial integral of all the individual surface features present in a pixel. This paper describes the results of an approach to understanding how BRDF effects can be used to characterise vegetation. The implementation of the Ross Thick Li Sparse BRDF model using MODIS is a stable, mature data product with a 10 year history and is a ready data source. Using this dataset, a geometric optical model is proposed that seeks to interpret the BRDF effects in terms of Normalised Difference Vegetation Index (NDVI and a height-to-width ratio of the vegetation components. The height-to-width ratio derived from this model seeks to represent the dependence of NDVI to changes in view zenith angle as a single numeric value. The model proposed within this paper has been applied to MODIS pixels in central Australia for areas in excess of 18,000 km2. The study area is predominantly arid and sparsely vegetated which provides a level of temporal and spatial homogeneity. The selected study area also minimises the effects associated with mutual obscuration of vegetation which is not considered by the model. The results are represented as a map and compared to NDVI derived from MODIS and NDVI derived from Landsat mosaics developed for Australia's National Carbon Accounting System (NCAS. The model reveals additional information not obvious in reflectance data. For example, the height-to-width ratio is able to reveal vegetation features in arid areas that do not have an accompanying significant increase in NDVI derived from MODIS, i.e. the height-to-width ratio reveals vegetation which is otherwise only apparent in NDVI derived
Directory of Open Access Journals (Sweden)
Gouveia, Valdiney V.
2008-01-01
Full Text Available O presente estudo teve como objetivo adaptar a STOMP (Short Test Of Preference, procurando reunir evidências de sua validade fatorial e consistência interna. Participaram 200 estudantes universitários de uma instituição pública da cidade de João Pessoa. Estes tinham idade média de 22 anos (DP = 4,77; 93,5% com amplitude de 18 a 30 anos, sendo a maioria mulher (51%, solteira (88% e de classe média (60%. Com relação ao curso, a maioria foi composta de alunos de psicologia (29% e administração (18%. Corroborando estudos prévios, foram identificados quatro fatores de estilo musical: Reflexivo e complexo (a=0,74, convencional (a=0,59, intenso e rebelde (a=0,64 e energético e rimico (a=0,60. Quando comparados os modelos uni e bi-fatorial com o de quatro fatores, este último se revelou mais satisfatório: x²/gl=2,59, GFI=0,89, AGFI=0,84 E rmsea=0,09. Observaram-se diferenças de preferência musical de acordo com o gênero; as mulheres indicaram gostar mais do estilo convencional, enquanto os homens preferiam o estilo intenso e rebelde. Estes resultados são criticamente discutidos, ponderando-se a necessidade de incluir novos estilos musicais e sugerindo estudos futuros sobre o tema
Fast Sparse Coding for Range Data Denoising with Sparse Ridges Constraint
Directory of Open Access Journals (Sweden)
Zhi Gao
2018-05-01
Full Text Available Light detection and ranging (LiDAR sensors have been widely deployed on intelligent systems such as unmanned ground vehicles (UGVs and unmanned aerial vehicles (UAVs to perform localization, obstacle detection, and navigation tasks. Thus, research into range data processing with competitive performance in terms of both accuracy and efficiency has attracted increasing attention. Sparse coding has revolutionized signal processing and led to state-of-the-art performance in a variety of applications. However, dictionary learning, which plays the central role in sparse coding techniques, is computationally demanding, resulting in its limited applicability in real-time systems. In this study, we propose sparse coding algorithms with a fixed pre-learned ridge dictionary to realize range data denoising via leveraging the regularity of laser range measurements in man-made environments. Experiments on both synthesized data and real data demonstrate that our method obtains accuracy comparable to that of sophisticated sparse coding methods, but with much higher computational efficiency.
Fast Sparse Coding for Range Data Denoising with Sparse Ridges Constraint.
Gao, Zhi; Lao, Mingjie; Sang, Yongsheng; Wen, Fei; Ramesh, Bharath; Zhai, Ruifang
2018-05-06
Light detection and ranging (LiDAR) sensors have been widely deployed on intelligent systems such as unmanned ground vehicles (UGVs) and unmanned aerial vehicles (UAVs) to perform localization, obstacle detection, and navigation tasks. Thus, research into range data processing with competitive performance in terms of both accuracy and efficiency has attracted increasing attention. Sparse coding has revolutionized signal processing and led to state-of-the-art performance in a variety of applications. However, dictionary learning, which plays the central role in sparse coding techniques, is computationally demanding, resulting in its limited applicability in real-time systems. In this study, we propose sparse coding algorithms with a fixed pre-learned ridge dictionary to realize range data denoising via leveraging the regularity of laser range measurements in man-made environments. Experiments on both synthesized data and real data demonstrate that our method obtains accuracy comparable to that of sophisticated sparse coding methods, but with much higher computational efficiency.
When sparse coding meets ranking: a joint framework for learning sparse codes and ranking scores
Wang, Jim Jing-Yan
2017-06-28
Sparse coding, which represents a data point as a sparse reconstruction code with regard to a dictionary, has been a popular data representation method. Meanwhile, in database retrieval problems, learning the ranking scores from data points plays an important role. Up to now, these two problems have always been considered separately, assuming that data coding and ranking are two independent and irrelevant problems. However, is there any internal relationship between sparse coding and ranking score learning? If yes, how to explore and make use of this internal relationship? In this paper, we try to answer these questions by developing the first joint sparse coding and ranking score learning algorithm. To explore the local distribution in the sparse code space, and also to bridge coding and ranking problems, we assume that in the neighborhood of each data point, the ranking scores can be approximated from the corresponding sparse codes by a local linear function. By considering the local approximation error of ranking scores, the reconstruction error and sparsity of sparse coding, and the query information provided by the user, we construct a unified objective function for learning of sparse codes, the dictionary and ranking scores. We further develop an iterative algorithm to solve this optimization problem.
The red edge in arid region vegetation: 340-1060 nm spectra
Ray, Terrill W.; Murray, Bruce C.; Chehbouni, A.; Njoku, Eni
1993-01-01
The remote sensing study of vegetated regions of the world has typically been focused on the use of broad-band vegetation indices such as NDVI. Various modifications of these indices have been developed in attempts to minimize the effect of soil background, e.g., SAVI, or to reduce the effect of the atmosphere, e.g., ARVI. Most of these indices depend on the so-called 'red edge,' the sharp transition between the strong absorption of chlorophyll pigment in visible wavelengths and the strong scattering in the near-infrared from the cellular structure of leaves. These broadband indices tend to become highly inaccurate as the green canopy cover becomes sparse. The advent of high spectral resolution remote sensing instrument such as the Airborne Visible and Infrared Imaging Spectrometer (AVIRIS) has allowed the detection of narrow spectral features in vegetation and there are reports of detection of the red edge even for pixels with very low levels of green vegetation cover by Vane et al. and Elvidge et al., and to characterize algal biomass in coastal areas. Spectral mixing approaches similar to those of Smith et al. can be extended into the high spectral resolution domain allowing for the analysis of more endmembers, and potentially, discrimination between material with narrow spectral differences. Vegetation in arid regions tends to be sparse, often with small leaves such as the creosote bush. Many types of arid region vegetation spend much of the year with their leaves in a senescent state, i.e., yellow, with lowered chlorophyll pigmentation. The sparseness of the leaves of many arid region plants has the dual effect of lowering the green leaf area which can be observed and of allowing more of the sub-shrub soil to be visible which further complicates the spectrum of a region covered with arid region vegetation. Elvidge examined the spectral characteristics of dry plant materials showing significant differences in the region of the red edge and the diagnostic ligno
Institute of Scientific and Technical Information of China (English)
吴俊君; 高志海; 李增元; 王红岩; 庞勇; 孙斌; 李长龙; 李绪志; 张九星
2014-01-01
为了精准地估测荒漠化地区的稀疏植被信息，选取内蒙古苏尼特右旗为研究区，以天宫一号高光谱数据为数据源，结合野外实地调查数据，通过归一化植被指数（normalized difference vegetation index ， NDVI）和土壤调节植被指数（soil adjusted vegetation index ，SAVI）对研究区内的植被覆盖度和生物量进行反演，并对比两种植被指数的优劣。首先，分析了每种波段组合下的植被指数与覆盖度、生物量的相关性，确定了最大相关的波段组合。覆盖度和生物量与NDVI的最大相关系数可达0.7左右，而与SAVI的最大相关系数可达0.8左右。NDVI的最佳波段组合的红光波段中心波长为630nm，近红外波段的中心波长为910nm，而SAVI的组合为620和920nm。其次，分别构建了两种植被指数与覆盖度、生物量之间的线性回归模型，所建模型的R2均能达到0.5以上。SAVI所建模型R2要比NDVI略高，其中植被覆盖度的反演模型R2高达0.59。经留一交叉验证，SAVI所建模型的均方根误差RMSE也比基于NDVI的模型小。结果表明：天宫一号高光谱数据丰富的光谱信息能有效地反映地表植被的真实情况，并且SAVI比NDVI更能较为精准地估测荒漠化地区的稀疏植被信息。%In order to estimate the sparse vegetation information accurately in desertification region ,taking southeast of Sunite Right Banner ,Inner Mongolia ,as the test site and Tiangong-1 hyperspectral image as the main data ,sparse vegetation coverage and biomass were retrieved based on normalized difference vegetation in-dex(NDVI) and soil adjusted vegetation index (SAVI) ,combined with the field investigation data .Then the advantages and disadvantages between them were compared .Firstly ,the correlation between vegetation inde-xes and vegetation coverage under different bands combination was analyzed ,as well as the biomass .Secondly , the best bands combination
Deploying temporary networks for upscaling of sparse network stations
Coopersmith, Evan J.; Cosh, Michael H.; Bell, Jesse E.; Kelly, Victoria; Hall, Mark; Palecki, Michael A.; Temimi, Marouane
2016-10-01
Soil observations networks at the national scale play an integral role in hydrologic modeling, drought assessment, agricultural decision support, and our ability to understand climate change. Understanding soil moisture variability is necessary to apply these measurements to model calibration, business and consumer applications, or even human health issues. The installation of soil moisture sensors as sparse, national networks is necessitated by limited financial resources. However, this results in the incomplete sampling of the local heterogeneity of soil type, vegetation cover, topography, and the fine spatial distribution of precipitation events. To this end, temporary networks can be installed in the areas surrounding a permanent installation within a sparse network. The temporary networks deployed in this study provide a more representative average at the 3 km and 9 km scales, localized about the permanent gauge. The value of such temporary networks is demonstrated at test sites in Millbrook, New York and Crossville, Tennessee. The capacity of a single U.S. Climate Reference Network (USCRN) sensor set to approximate the average of a temporary network at the 3 km and 9 km scales using a simple linear scaling function is tested. The capacity of a temporary network to provide reliable estimates with diminishing numbers of sensors, the temporal stability of those networks, and ultimately, the relationship of the variability of those networks to soil moisture conditions at the permanent sensor are investigated. In this manner, this work demonstrates the single-season installation of a temporary network as a mechanism to characterize the soil moisture variability at a permanent gauge within a sparse network.
Sparse structure regularized ranking
Wang, Jim Jing-Yan; Sun, Yijun; Gao, Xin
2014-01-01
Learning ranking scores is critical for the multimedia database retrieval problem. In this paper, we propose a novel ranking score learning algorithm by exploring the sparse structure and using it to regularize ranking scores. To explore the sparse
Sparse structure regularized ranking
Wang, Jim Jing-Yan
2014-04-17
Learning ranking scores is critical for the multimedia database retrieval problem. In this paper, we propose a novel ranking score learning algorithm by exploring the sparse structure and using it to regularize ranking scores. To explore the sparse structure, we assume that each multimedia object could be represented as a sparse linear combination of all other objects, and combination coefficients are regarded as a similarity measure between objects and used to regularize their ranking scores. Moreover, we propose to learn the sparse combination coefficients and the ranking scores simultaneously. A unified objective function is constructed with regard to both the combination coefficients and the ranking scores, and is optimized by an iterative algorithm. Experiments on two multimedia database retrieval data sets demonstrate the significant improvements of the propose algorithm over state-of-the-art ranking score learning algorithms.
Turbulent flows over sparse canopies
Sharma, Akshath; García-Mayoral, Ricardo
2018-04-01
Turbulent flows over sparse and dense canopies exerting a similar drag force on the flow are investigated using Direct Numerical Simulations. The dense canopies are modelled using a homogeneous drag force, while for the sparse canopy, the geometry of the canopy elements is represented. It is found that on using the friction velocity based on the local shear at each height, the streamwise velocity fluctuations and the Reynolds stress within the sparse canopy are similar to those from a comparable smooth-wall case. In addition, when scaled with the local friction velocity, the intensity of the off-wall peak in the streamwise vorticity for sparse canopies also recovers a value similar to a smooth-wall. This indicates that the sparse canopy does not significantly disturb the near-wall turbulence cycle, but causes its rescaling to an intensity consistent with a lower friction velocity within the canopy. In comparison, the dense canopy is found to have a higher damping effect on the turbulent fluctuations. For the case of the sparse canopy, a peak in the spectral energy density of the wall-normal velocity, and Reynolds stress is observed, which may indicate the formation of Kelvin-Helmholtz-like instabilities. It is also found that a sparse canopy is better modelled by a homogeneous drag applied on the mean flow alone, and not the turbulent fluctuations.
Discriminative sparse coding on multi-manifolds
Wang, J.J.-Y.; Bensmail, H.; Yao, N.; Gao, Xin
2013-01-01
Sparse coding has been popularly used as an effective data representation method in various applications, such as computer vision, medical imaging and bioinformatics. However, the conventional sparse coding algorithms and their manifold-regularized variants (graph sparse coding and Laplacian sparse coding), learn codebooks and codes in an unsupervised manner and neglect class information that is available in the training set. To address this problem, we propose a novel discriminative sparse coding method based on multi-manifolds, that learns discriminative class-conditioned codebooks and sparse codes from both data feature spaces and class labels. First, the entire training set is partitioned into multiple manifolds according to the class labels. Then, we formulate the sparse coding as a manifold-manifold matching problem and learn class-conditioned codebooks and codes to maximize the manifold margins of different classes. Lastly, we present a data sample-manifold matching-based strategy to classify the unlabeled data samples. Experimental results on somatic mutations identification and breast tumor classification based on ultrasonic images demonstrate the efficacy of the proposed data representation and classification approach. 2013 The Authors. All rights reserved.
Discriminative sparse coding on multi-manifolds
Wang, J.J.-Y.
2013-09-26
Sparse coding has been popularly used as an effective data representation method in various applications, such as computer vision, medical imaging and bioinformatics. However, the conventional sparse coding algorithms and their manifold-regularized variants (graph sparse coding and Laplacian sparse coding), learn codebooks and codes in an unsupervised manner and neglect class information that is available in the training set. To address this problem, we propose a novel discriminative sparse coding method based on multi-manifolds, that learns discriminative class-conditioned codebooks and sparse codes from both data feature spaces and class labels. First, the entire training set is partitioned into multiple manifolds according to the class labels. Then, we formulate the sparse coding as a manifold-manifold matching problem and learn class-conditioned codebooks and codes to maximize the manifold margins of different classes. Lastly, we present a data sample-manifold matching-based strategy to classify the unlabeled data samples. Experimental results on somatic mutations identification and breast tumor classification based on ultrasonic images demonstrate the efficacy of the proposed data representation and classification approach. 2013 The Authors. All rights reserved.
Sparse Regression by Projection and Sparse Discriminant Analysis
Qi, Xin
2015-04-03
© 2015, © American Statistical Association, Institute of Mathematical Statistics, and Interface Foundation of North America. Recent years have seen active developments of various penalized regression methods, such as LASSO and elastic net, to analyze high-dimensional data. In these approaches, the direction and length of the regression coefficients are determined simultaneously. Due to the introduction of penalties, the length of the estimates can be far from being optimal for accurate predictions. We introduce a new framework, regression by projection, and its sparse version to analyze high-dimensional data. The unique nature of this framework is that the directions of the regression coefficients are inferred first, and the lengths and the tuning parameters are determined by a cross-validation procedure to achieve the largest prediction accuracy. We provide a theoretical result for simultaneous model selection consistency and parameter estimation consistency of our method in high dimension. This new framework is then generalized such that it can be applied to principal components analysis, partial least squares, and canonical correlation analysis. We also adapt this framework for discriminant analysis. Compared with the existing methods, where there is relatively little control of the dependency among the sparse components, our method can control the relationships among the components. We present efficient algorithms and related theory for solving the sparse regression by projection problem. Based on extensive simulations and real data analysis, we demonstrate that our method achieves good predictive performance and variable selection in the regression setting, and the ability to control relationships between the sparse components leads to more accurate classification. In supplementary materials available online, the details of the algorithms and theoretical proofs, and R codes for all simulation studies are provided.
Sparse distributed memory overview
Raugh, Mike
1990-01-01
The Sparse Distributed Memory (SDM) project is investigating the theory and applications of massively parallel computing architecture, called sparse distributed memory, that will support the storage and retrieval of sensory and motor patterns characteristic of autonomous systems. The immediate objectives of the project are centered in studies of the memory itself and in the use of the memory to solve problems in speech, vision, and robotics. Investigation of methods for encoding sensory data is an important part of the research. Examples of NASA missions that may benefit from this work are Space Station, planetary rovers, and solar exploration. Sparse distributed memory offers promising technology for systems that must learn through experience and be capable of adapting to new circumstances, and for operating any large complex system requiring automatic monitoring and control. Sparse distributed memory is a massively parallel architecture motivated by efforts to understand how the human brain works. Sparse distributed memory is an associative memory, able to retrieve information from cues that only partially match patterns stored in the memory. It is able to store long temporal sequences derived from the behavior of a complex system, such as progressive records of the system's sensory data and correlated records of the system's motor controls.
In-place sparse suffix sorting
DEFF Research Database (Denmark)
Prezza, Nicola
2018-01-01
information regarding the lexicographical order of a size-b subset of all n text suffixes is often needed. Such information can be stored space-efficiently (in b words) in the sparse suffix array (SSA). The SSA and its relative sparse LCP array (SLCP) can be used as a space-efficient substitute of the sparse...... suffix tree. Very recently, Gawrychowski and Kociumaka [11] showed that the sparse suffix tree (and therefore SSA and SLCP) can be built in asymptotically optimal O(b) space with a Monte Carlo algorithm running in O(n) time. The main reason for using the SSA and SLCP arrays in place of the sparse suffix...... tree is, however, their reduced space of b words each. This leads naturally to the quest for in-place algorithms building these arrays. Franceschini and Muthukrishnan [8] showed that the full suffix array can be built in-place and in optimal running time. On the other hand, finding sub-quadratic in...
Snowmelt in a High Latitude Mountain Catchment: Effect of Vegetation Cover and Elevation
Pomeroy, J. W.; Essery, R. L.; Ellis, C. R.; Hedstrom, N. R.; Janowicz, R.; Granger, R. J.
2004-12-01
The energetics and mass balance of snowpacks in the premelt and melt period were compared from three elevation bands in a high latitude mountain catchment, Wolf Creek Research Basin, Yukon. Elevation is strongly correlated with vegetation cover and in this case the three elevation bands (low, middle, high) correspond to mature spruce forest, dense shrub tundra and sparse tundra (alpine). Measurements of radiation, ground heat flux, snow depth, snowfall, air temperature, wind speed were made on a half-hourly basis at the three elevations for a 10 year period. Sondes provided vertical gradients of air temperature, humidity, wind speed and air pressure. Snow depth and density surveys were conducted monthly. Comparisons of wind speed, air temperature and humidity at three elevations show that the expected elevational gradients in the free atmosphere were slightly enhanced just above the surface canopies, but that the climate at the snow surface was further influenced by complex canopy effects. Premelt snow accumulation was strongly affected by intercepted snow in the forest and blowing snow sublimation in the sparse tundra but not by the small elevational gradients in snowfall. As a result the maximum premelt SWE was found in the mid-elevation shrub tundra and was roughly double that of the sparse tundra or forest. Minimum variability of SWE was observed in the forest and shrub tundra (CV=0.25) while in the sparse tundra variability doubled (CV=0.5). Snowmelt was influenced by differences in premelt accumulation as well as differences in the net energy fluxes to snow. Elevation had a strong effect on the initiation of melt with the forest melt starting on average 16 days before the shrub tundra and 19 days before the sparse tundra. Mean melt rates showed a maximum in middle elevations and increased from 860 kJ/day in the forest to 1460 kJ/day in the sparse tundra and 2730 kJ/day in the shrub tundra. The forest canopy reduced melt while the shrub canopy enhanced it
Exarchakis, Georgios; Lücke, Jörg
2017-11-01
Sparse coding algorithms with continuous latent variables have been the subject of a large number of studies. However, discrete latent spaces for sparse coding have been largely ignored. In this work, we study sparse coding with latents described by discrete instead of continuous prior distributions. We consider the general case in which the latents (while being sparse) can take on any value of a finite set of possible values and in which we learn the prior probability of any value from data. This approach can be applied to any data generated by discrete causes, and it can be applied as an approximation of continuous causes. As the prior probabilities are learned, the approach then allows for estimating the prior shape without assuming specific functional forms. To efficiently train the parameters of our probabilistic generative model, we apply a truncated expectation-maximization approach (expectation truncation) that we modify to work with a general discrete prior. We evaluate the performance of the algorithm by applying it to a variety of tasks: (1) we use artificial data to verify that the algorithm can recover the generating parameters from a random initialization, (2) use image patches of natural images and discuss the role of the prior for the extraction of image components, (3) use extracellular recordings of neurons to present a novel method of analysis for spiking neurons that includes an intuitive discretization strategy, and (4) apply the algorithm on the task of encoding audio waveforms of human speech. The diverse set of numerical experiments presented in this letter suggests that discrete sparse coding algorithms can scale efficiently to work with realistic data sets and provide novel statistical quantities to describe the structure of the data.
International Nuclear Information System (INIS)
Peng, D L; Huang, W J; Zhou, B; Li, C J; Wu, Y P; Yang, X H
2014-01-01
Plant phenology is considered one of the most sensitive and easily observable natural indicators of climate change, though few studies have focused on the heterogeneities of phenology across the different vegetation types. In this study, we tried to find the phenological characteristics of the main vegetation types on the Tibetan Plateau. MCD12Q1 images over the Tibetan Plateau from 2001 to 2010 were used to extract the main vegetation types. The Normalized Difference Vegetation Index (NDVI), Enhanced Vegetation Index (EVI), and Land Surface Water Index (LSWI) were calculated using surface reflectance values from the blue, red, near-infrared, short-wave infrared (SWIR) 6 (for LSIW6), and SWIR7 (for LSIW7) bands derived from MOD09A1 and used to explore the phenological characteristics of the main vegetation types on the Tibetan Plateau. The results showed that there were eight constant vegetation types on the Tibetan Plateau from 2001 to 2010 demonstrating multiple phenological characteristics. Evergreen needleleaf forest, evergreen broadleaf forest, and permanent wetland had the minimum NDVI values during the summer season, while open shrubland and grassland had the maximum NDVI/EVI values during this period. NDVI and EVI of cropland/natural vegetation had two peaks for their seasonal variations. EVI showed a more significant correlation with LSWI6/LSWI7 than NDVI. Compared to LSWI7, larger EVI values occurred in evergreen needleleaf forest, evergreen broadleaf forest, mixed forest, and permanent wetland, while smaller values occurred in shrubland and barren or sparsely vegetated cover, and nearly equal values occurred in grassland and cropland
Marandi, Ahmadreza; de Klerk, Etienne; Dahl, Joachim
The sparse bounded degree sum-of-squares (sparse-BSOS) hierarchy of Weisser, Lasserre and Toh [arXiv:1607.01151,2016] constructs a sequence of lower bounds for a sparse polynomial optimization problem. Under some assumptions, it is proven by the authors that the sequence converges to the optimal
Bayesian Inference Methods for Sparse Channel Estimation
DEFF Research Database (Denmark)
Pedersen, Niels Lovmand
2013-01-01
This thesis deals with sparse Bayesian learning (SBL) with application to radio channel estimation. As opposed to the classical approach for sparse signal representation, we focus on the problem of inferring complex signals. Our investigations within SBL constitute the basis for the development...... of Bayesian inference algorithms for sparse channel estimation. Sparse inference methods aim at finding the sparse representation of a signal given in some overcomplete dictionary of basis vectors. Within this context, one of our main contributions to the field of SBL is a hierarchical representation...... analysis of the complex prior representation, where we show that the ability to induce sparse estimates of a given prior heavily depends on the inference method used and, interestingly, whether real or complex variables are inferred. We also show that the Bayesian estimators derived from the proposed...
When sparse coding meets ranking: a joint framework for learning sparse codes and ranking scores
Wang, Jim Jing-Yan; Cui, Xuefeng; Yu, Ge; Guo, Lili; Gao, Xin
2017-01-01
Sparse coding, which represents a data point as a sparse reconstruction code with regard to a dictionary, has been a popular data representation method. Meanwhile, in database retrieval problems, learning the ranking scores from data points plays
Improved Sparse Channel Estimation for Cooperative Communication Systems
Directory of Open Access Journals (Sweden)
Guan Gui
2012-01-01
Full Text Available Accurate channel state information (CSI is necessary at receiver for coherent detection in amplify-and-forward (AF cooperative communication systems. To estimate the channel, traditional methods, that is, least squares (LS and least absolute shrinkage and selection operator (LASSO, are based on assumptions of either dense channel or global sparse channel. However, LS-based linear method neglects the inherent sparse structure information while LASSO-based sparse channel method cannot take full advantage of the prior information. Based on the partial sparse assumption of the cooperative channel model, we propose an improved channel estimation method with partial sparse constraint. At first, by using sparse decomposition theory, channel estimation is formulated as a compressive sensing problem. Secondly, the cooperative channel is reconstructed by LASSO with partial sparse constraint. Finally, numerical simulations are carried out to confirm the superiority of proposed methods over global sparse channel estimation methods.
Sparse Image Reconstruction in Computed Tomography
DEFF Research Database (Denmark)
Jørgensen, Jakob Sauer
In recent years, increased focus on the potentially harmful effects of x-ray computed tomography (CT) scans, such as radiation-induced cancer, has motivated research on new low-dose imaging techniques. Sparse image reconstruction methods, as studied for instance in the field of compressed sensing...... applications. This thesis takes a systematic approach toward establishing quantitative understanding of conditions for sparse reconstruction to work well in CT. A general framework for analyzing sparse reconstruction methods in CT is introduced and two sets of computational tools are proposed: 1...... contributions to a general set of computational characterization tools. Thus, the thesis contributions help advance sparse reconstruction methods toward routine use in...
Review on urban vegetation and particle air pollution - Deposition and dispersion
Janhäll, Sara
2015-03-01
Urban vegetation affects air quality through influencing pollutant deposition and dispersion. Both processes are described by many existing models and experiments, on-site and in wind tunnels, focussing e.g. on urban street canyons and crossings or vegetation barriers adjacent to traffic sources. There is an urgent need for well-structured experimental data, including detailed empirical descriptions of parameters that are not the explicit focus of the study. This review revealed that design and choice of urban vegetation is crucial when using vegetation as an ecosystem service for air quality improvements. The reduced mixing in trafficked street canyons on adding large trees increases local air pollution levels, while low vegetation close to sources can improve air quality by increasing deposition. Filtration vegetation barriers have to be dense enough to offer large deposition surface area and porous enough to allow penetration, instead of deflection of the air stream above the barrier. The choice between tall or short and dense or sparse vegetation determines the effect on air pollution from different sources and different particle sizes.
Sparse Regression by Projection and Sparse Discriminant Analysis
Qi, Xin; Luo, Ruiyan; Carroll, Raymond J.; Zhao, Hongyu
2015-01-01
predictions. We introduce a new framework, regression by projection, and its sparse version to analyze high-dimensional data. The unique nature of this framework is that the directions of the regression coefficients are inferred first, and the lengths
Sparse decompositions in 'incoherent' dictionaries
DEFF Research Database (Denmark)
Gribonval, R.; Nielsen, Morten
2003-01-01
a unique sparse representation in such a dictionary. In particular, it is proved that the result of Donoho and Huo, concerning the replacement of a combinatorial optimization problem with a linear programming problem when searching for sparse representations, has an analog for dictionaries that may...
Data analysis in high-dimensional sparse spaces
DEFF Research Database (Denmark)
Clemmensen, Line Katrine Harder
classification techniques for high-dimensional problems are presented: Sparse discriminant analysis, sparse mixture discriminant analysis and orthogonality constrained support vector machines. The first two introduces sparseness to the well known linear and mixture discriminant analysis and thereby provide low...... are applied to classifications of fish species, ear canal impressions used in the hearing aid industry, microbiological fungi species, and various cancerous tissues and healthy tissues. In addition, novel applications of sparse regressions (also called the elastic net) to the medical, concrete, and food...
A sparse-grid isogeometric solver
Beck, Joakim; Sangalli, Giancarlo; Tamellini, Lorenzo
2018-01-01
Isogeometric Analysis (IGA) typically adopts tensor-product splines and NURBS as a basis for the approximation of the solution of PDEs. In this work, we investigate to which extent IGA solvers can benefit from the so-called sparse-grids construction in its combination technique form, which was first introduced in the early 90’s in the context of the approximation of high-dimensional PDEs.The tests that we report show that, in accordance to the literature, a sparse-grid construction can indeed be useful if the solution of the PDE at hand is sufficiently smooth. Sparse grids can also be useful in the case of non-smooth solutions when some a-priori knowledge on the location of the singularities of the solution can be exploited to devise suitable non-equispaced meshes. Finally, we remark that sparse grids can be seen as a simple way to parallelize pre-existing serial IGA solvers in a straightforward fashion, which can be beneficial in many practical situations.
A sparse-grid isogeometric solver
Beck, Joakim
2018-02-28
Isogeometric Analysis (IGA) typically adopts tensor-product splines and NURBS as a basis for the approximation of the solution of PDEs. In this work, we investigate to which extent IGA solvers can benefit from the so-called sparse-grids construction in its combination technique form, which was first introduced in the early 90’s in the context of the approximation of high-dimensional PDEs.The tests that we report show that, in accordance to the literature, a sparse-grid construction can indeed be useful if the solution of the PDE at hand is sufficiently smooth. Sparse grids can also be useful in the case of non-smooth solutions when some a-priori knowledge on the location of the singularities of the solution can be exploited to devise suitable non-equispaced meshes. Finally, we remark that sparse grids can be seen as a simple way to parallelize pre-existing serial IGA solvers in a straightforward fashion, which can be beneficial in many practical situations.
Sloan, B.; Ebtehaj, A. M.; Guala, M.
2017-12-01
The understanding of heat and water vapor transfer from the land surface to the atmosphere by evapotranspiration (ET) is crucial for predicting the hydrologic water balance and climate forecasts used in water resources decision-making. However, the complex distribution of vegetation, soil and atmospheric conditions makes large-scale prognosis of evaporative fluxes difficult. Current ET models, such as Penman-Monteith and flux-gradient methods, are challenging to apply at the microscale due to ambiguity in determining resistance factors to momentum, heat and vapor transport for realistic landscapes. Recent research has made progress in modifying Monin-Obukhov similarity theory for dense plant canopies as well as providing clearer description of diffusive controls on evaporation at a smooth soil surface, which both aid in calculating more accurate resistance parameters. However, in nature, surfaces typically tend to be aerodynamically rough and vegetation is a mixture of sparse and dense canopies in non-uniform configurations. The goal of our work is to parameterize the resistances to evaporation based on spatial distributions of sparse plant canopies using novel wind tunnel experimentation at the St. Anthony Falls Laboratory (SAFL). The state-of-the-art SAFL wind tunnel was updated with a retractable soil box test section (shown in Figure 1), complete with a high-resolution scale and soil moisture/temperature sensors for recording evaporative fluxes and drying fronts. The existing capabilities of the tunnel were used to create incoming non-neutral stability conditions and measure 2-D velocity fields as well as momentum and heat flux profiles through PIV and hotwire anemometry, respectively. Model trees (h = 5 cm) were placed in structured and random configurations based on a probabilistic spacing that was derived from aerial imagery. The novel wind tunnel dataset provides the surface energy budget, turbulence statistics and spatial soil moisture data under varying
Supervised Transfer Sparse Coding
Al-Shedivat, Maruan
2014-07-27
A combination of the sparse coding and transfer learn- ing techniques was shown to be accurate and robust in classification tasks where training and testing objects have a shared feature space but are sampled from differ- ent underlying distributions, i.e., belong to different do- mains. The key assumption in such case is that in spite of the domain disparity, samples from different domains share some common hidden factors. Previous methods often assumed that all the objects in the target domain are unlabeled, and thus the training set solely comprised objects from the source domain. However, in real world applications, the target domain often has some labeled objects, or one can always manually label a small num- ber of them. In this paper, we explore such possibil- ity and show how a small number of labeled data in the target domain can significantly leverage classifica- tion accuracy of the state-of-the-art transfer sparse cod- ing methods. We further propose a unified framework named supervised transfer sparse coding (STSC) which simultaneously optimizes sparse representation, domain transfer and classification. Experimental results on three applications demonstrate that a little manual labeling and then learning the model in a supervised fashion can significantly improve classification accuracy.
Joint Group Sparse PCA for Compressed Hyperspectral Imaging.
Khan, Zohaib; Shafait, Faisal; Mian, Ajmal
2015-12-01
A sparse principal component analysis (PCA) seeks a sparse linear combination of input features (variables), so that the derived features still explain most of the variations in the data. A group sparse PCA introduces structural constraints on the features in seeking such a linear combination. Collectively, the derived principal components may still require measuring all the input features. We present a joint group sparse PCA (JGSPCA) algorithm, which forces the basic coefficients corresponding to a group of features to be jointly sparse. Joint sparsity ensures that the complete basis involves only a sparse set of input features, whereas the group sparsity ensures that the structural integrity of the features is maximally preserved. We evaluate the JGSPCA algorithm on the problems of compressed hyperspectral imaging and face recognition. Compressed sensing results show that the proposed method consistently outperforms sparse PCA and group sparse PCA in reconstructing the hyperspectral scenes of natural and man-made objects. The efficacy of the proposed compressed sensing method is further demonstrated in band selection for face recognition.
Parallel Sparse Matrix - Vector Product
DEFF Research Database (Denmark)
Alexandersen, Joe; Lazarov, Boyan Stefanov; Dammann, Bernd
This technical report contains a case study of a sparse matrix-vector product routine, implemented for parallel execution on a compute cluster with both pure MPI and hybrid MPI-OpenMP solutions. C++ classes for sparse data types were developed and the report shows how these class can be used...
Multi-threaded Sparse Matrix Sparse Matrix Multiplication for Many-Core and GPU Architectures.
Energy Technology Data Exchange (ETDEWEB)
Deveci, Mehmet [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Trott, Christian Robert [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Rajamanickam, Sivasankaran [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
2018-01-01
Sparse Matrix-Matrix multiplication is a key kernel that has applications in several domains such as scientific computing and graph analysis. Several algorithms have been studied in the past for this foundational kernel. In this paper, we develop parallel algorithms for sparse matrix- matrix multiplication with a focus on performance portability across different high performance computing architectures. The performance of these algorithms depend on the data structures used in them. We compare different types of accumulators in these algorithms and demonstrate the performance difference between these data structures. Furthermore, we develop a meta-algorithm, kkSpGEMM, to choose the right algorithm and data structure based on the characteristics of the problem. We show performance comparisons on three architectures and demonstrate the need for the community to develop two phase sparse matrix-matrix multiplication implementations for efficient reuse of the data structures involved.
Sparse approximation with bases
2015-01-01
This book systematically presents recent fundamental results on greedy approximation with respect to bases. Motivated by numerous applications, the last decade has seen great successes in studying nonlinear sparse approximation. Recent findings have established that greedy-type algorithms are suitable methods of nonlinear approximation in both sparse approximation with respect to bases and sparse approximation with respect to redundant systems. These insights, combined with some previous fundamental results, form the basis for constructing the theory of greedy approximation. Taking into account the theoretical and practical demand for this kind of theory, the book systematically elaborates a theoretical framework for greedy approximation and its applications. The book addresses the needs of researchers working in numerical mathematics, harmonic analysis, and functional analysis. It quickly takes the reader from classical results to the latest frontier, but is written at the level of a graduate course and do...
Efficient convolutional sparse coding
Wohlberg, Brendt
2017-06-20
Computationally efficient algorithms may be applied for fast dictionary learning solving the convolutional sparse coding problem in the Fourier domain. More specifically, efficient convolutional sparse coding may be derived within an alternating direction method of multipliers (ADMM) framework that utilizes fast Fourier transforms (FFT) to solve the main linear system in the frequency domain. Such algorithms may enable a significant reduction in computational cost over conventional approaches by implementing a linear solver for the most critical and computationally expensive component of the conventional iterative algorithm. The theoretical computational cost of the algorithm may be reduced from O(M.sup.3N) to O(MN log N), where N is the dimensionality of the data and M is the number of elements in the dictionary. This significant improvement in efficiency may greatly increase the range of problems that can practically be addressed via convolutional sparse representations.
Hyperspectral Unmixing with Robust Collaborative Sparse Regression
Directory of Open Access Journals (Sweden)
Chang Li
2016-07-01
Full Text Available Recently, sparse unmixing (SU of hyperspectral data has received particular attention for analyzing remote sensing images. However, most SU methods are based on the commonly admitted linear mixing model (LMM, which ignores the possible nonlinear effects (i.e., nonlinearity. In this paper, we propose a new method named robust collaborative sparse regression (RCSR based on the robust LMM (rLMM for hyperspectral unmixing. The rLMM takes the nonlinearity into consideration, and the nonlinearity is merely treated as outlier, which has the underlying sparse property. The RCSR simultaneously takes the collaborative sparse property of the abundance and sparsely distributed additive property of the outlier into consideration, which can be formed as a robust joint sparse regression problem. The inexact augmented Lagrangian method (IALM is used to optimize the proposed RCSR. The qualitative and quantitative experiments on synthetic datasets and real hyperspectral images demonstrate that the proposed RCSR is efficient for solving the hyperspectral SU problem compared with the other four state-of-the-art algorithms.
Image fusion using sparse overcomplete feature dictionaries
Brumby, Steven P.; Bettencourt, Luis; Kenyon, Garrett T.; Chartrand, Rick; Wohlberg, Brendt
2015-10-06
Approaches for deciding what individuals in a population of visual system "neurons" are looking for using sparse overcomplete feature dictionaries are provided. A sparse overcomplete feature dictionary may be learned for an image dataset and a local sparse representation of the image dataset may be built using the learned feature dictionary. A local maximum pooling operation may be applied on the local sparse representation to produce a translation-tolerant representation of the image dataset. An object may then be classified and/or clustered within the translation-tolerant representation of the image dataset using a supervised classification algorithm and/or an unsupervised clustering algorithm.
Manifold regularization for sparse unmixing of hyperspectral images.
Liu, Junmin; Zhang, Chunxia; Zhang, Jiangshe; Li, Huirong; Gao, Yuelin
2016-01-01
Recently, sparse unmixing has been successfully applied to spectral mixture analysis of remotely sensed hyperspectral images. Based on the assumption that the observed image signatures can be expressed in the form of linear combinations of a number of pure spectral signatures known in advance, unmixing of each mixed pixel in the scene is to find an optimal subset of signatures in a very large spectral library, which is cast into the framework of sparse regression. However, traditional sparse regression models, such as collaborative sparse regression , ignore the intrinsic geometric structure in the hyperspectral data. In this paper, we propose a novel model, called manifold regularized collaborative sparse regression , by introducing a manifold regularization to the collaborative sparse regression model. The manifold regularization utilizes a graph Laplacian to incorporate the locally geometrical structure of the hyperspectral data. An algorithm based on alternating direction method of multipliers has been developed for the manifold regularized collaborative sparse regression model. Experimental results on both the simulated and real hyperspectral data sets have demonstrated the effectiveness of our proposed model.
Enhancing Scalability of Sparse Direct Methods
International Nuclear Information System (INIS)
Li, Xiaoye S.; Demmel, James; Grigori, Laura; Gu, Ming; Xia, Jianlin; Jardin, Steve; Sovinec, Carl; Lee, Lie-Quan
2007-01-01
TOPS is providing high-performance, scalable sparse direct solvers, which have had significant impacts on the SciDAC applications, including fusion simulation (CEMM), accelerator modeling (COMPASS), as well as many other mission-critical applications in DOE and elsewhere. Our recent developments have been focusing on new techniques to overcome scalability bottleneck of direct methods, in both time and memory. These include parallelizing symbolic analysis phase and developing linear-complexity sparse factorization methods. The new techniques will make sparse direct methods more widely usable in large 3D simulations on highly-parallel petascale computers
Regression with Sparse Approximations of Data
DEFF Research Database (Denmark)
Noorzad, Pardis; Sturm, Bob L.
2012-01-01
We propose sparse approximation weighted regression (SPARROW), a method for local estimation of the regression function that uses sparse approximation with a dictionary of measurements. SPARROW estimates the regression function at a point with a linear combination of a few regressands selected...... by a sparse approximation of the point in terms of the regressors. We show SPARROW can be considered a variant of \\(k\\)-nearest neighbors regression (\\(k\\)-NNR), and more generally, local polynomial kernel regression. Unlike \\(k\\)-NNR, however, SPARROW can adapt the number of regressors to use based...
Sparse adaptive filters for echo cancellation
Paleologu, Constantin
2011-01-01
Adaptive filters with a large number of coefficients are usually involved in both network and acoustic echo cancellation. Consequently, it is important to improve the convergence rate and tracking of the conventional algorithms used for these applications. This can be achieved by exploiting the sparseness character of the echo paths. Identification of sparse impulse responses was addressed mainly in the last decade with the development of the so-called ``proportionate''-type algorithms. The goal of this book is to present the most important sparse adaptive filters developed for echo cancellati
Stang, Christoph; Wieczorek, Matthias Valentin; Noss, Christian; Lorke, Andreas; Scherr, Frank; Goerlitz, Gerhard; Schulz, Ralf
2014-07-01
Quantitative information on the processes leading to the retention of plant protection products (PPPs) in surface waters is not available, particularly for flow-through systems. The influence of aquatic vegetation on the hydraulic- and sorption-mediated mitigation processes of three PPPs (triflumuron, pencycuron, and penflufen; logKOW 3.3-4.9) in 45-m slow-flowing stream mesocosms was investigated. Peak reductions were 35-38% in an unvegetated stream mesocosm, 60-62% in a sparsely vegetated stream mesocosm (13% coverage with Elodea nuttallii), and in a similar range of 57-69% in a densely vegetated stream mesocosm (100% coverage). Between 89% and 93% of the measured total peak reductions in the sparsely vegetated stream can be explained by an increase of vegetation-induced dispersion (estimated with the one-dimensional solute transport model OTIS), while 7-11% of the peak reduction can be attributed to sorption processes. However, dispersion contributed only 59-71% of the peak reductions in the densely vegetated stream mesocosm, where 29% to 41% of the total peak reductions can be attributed to sorption processes. In the densely vegetated stream, 8-27% of the applied PPPs, depending on the logKOW values of the compounds, were temporarily retained by macrophytes. Increasing PPP recoveries in the aqueous phase were accompanied by a decrease of PPP concentrations in macrophytes indicating kinetic desorption over time. This is the first study to provide quantitative data on how the interaction of dispersion and sorption, driven by aquatic macrophytes, influences the mitigation of PPP concentrations in flowing vegetated stream systems. Copyright © 2014 Elsevier Ltd. All rights reserved.
Parallel sparse direct solver for integrated circuit simulation
Chen, Xiaoming; Yang, Huazhong
2017-01-01
This book describes algorithmic methods and parallelization techniques to design a parallel sparse direct solver which is specifically targeted at integrated circuit simulation problems. The authors describe a complete flow and detailed parallel algorithms of the sparse direct solver. They also show how to improve the performance by simple but effective numerical techniques. The sparse direct solver techniques described can be applied to any SPICE-like integrated circuit simulator and have been proven to be high-performance in actual circuit simulation. Readers will benefit from the state-of-the-art parallel integrated circuit simulation techniques described in this book, especially the latest parallel sparse matrix solution techniques. · Introduces complicated algorithms of sparse linear solvers, using concise principles and simple examples, without complex theory or lengthy derivations; · Describes a parallel sparse direct solver that can be adopted to accelerate any SPICE-like integrated circuit simulato...
Biclustering via Sparse Singular Value Decomposition
Lee, Mihee
2010-02-16
Sparse singular value decomposition (SSVD) is proposed as a new exploratory analysis tool for biclustering or identifying interpretable row-column associations within high-dimensional data matrices. SSVD seeks a low-rank, checkerboard structured matrix approximation to data matrices. The desired checkerboard structure is achieved by forcing both the left- and right-singular vectors to be sparse, that is, having many zero entries. By interpreting singular vectors as regression coefficient vectors for certain linear regressions, sparsity-inducing regularization penalties are imposed to the least squares regression to produce sparse singular vectors. An efficient iterative algorithm is proposed for computing the sparse singular vectors, along with some discussion of penalty parameter selection. A lung cancer microarray dataset and a food nutrition dataset are used to illustrate SSVD as a biclustering method. SSVD is also compared with some existing biclustering methods using simulated datasets. © 2010, The International Biometric Society.
Robust Face Recognition Via Gabor Feature and Sparse Representation
Directory of Open Access Journals (Sweden)
Hao Yu-Juan
2016-01-01
Full Text Available Sparse representation based on compressed sensing theory has been widely used in the field of face recognition, and has achieved good recognition results. but the face feature extraction based on sparse representation is too simple, and the sparse coefficient is not sparse. In this paper, we improve the classification algorithm based on the fusion of sparse representation and Gabor feature, and then improved algorithm for Gabor feature which overcomes the problem of large dimension of the vector dimension, reduces the computation and storage cost, and enhances the robustness of the algorithm to the changes of the environment.The classification efficiency of sparse representation is determined by the collaborative representation,we simplify the sparse constraint based on L1 norm to the least square constraint, which makes the sparse coefficients both positive and reduce the complexity of the algorithm. Experimental results show that the proposed method is robust to illumination, facial expression and pose variations of face recognition, and the recognition rate of the algorithm is improved.
Sparse Learning with Stochastic Composite Optimization.
Zhang, Weizhong; Zhang, Lijun; Jin, Zhongming; Jin, Rong; Cai, Deng; Li, Xuelong; Liang, Ronghua; He, Xiaofei
2017-06-01
In this paper, we study Stochastic Composite Optimization (SCO) for sparse learning that aims to learn a sparse solution from a composite function. Most of the recent SCO algorithms have already reached the optimal expected convergence rate O(1/λT), but they often fail to deliver sparse solutions at the end either due to the limited sparsity regularization during stochastic optimization (SO) or due to the limitation in online-to-batch conversion. Even when the objective function is strongly convex, their high probability bounds can only attain O(√{log(1/δ)/T}) with δ is the failure probability, which is much worse than the expected convergence rate. To address these limitations, we propose a simple yet effective two-phase Stochastic Composite Optimization scheme by adding a novel powerful sparse online-to-batch conversion to the general Stochastic Optimization algorithms. We further develop three concrete algorithms, OptimalSL, LastSL and AverageSL, directly under our scheme to prove the effectiveness of the proposed scheme. Both the theoretical analysis and the experiment results show that our methods can really outperform the existing methods at the ability of sparse learning and at the meantime we can improve the high probability bound to approximately O(log(log(T)/δ)/λT).
Shearlets and Optimally Sparse Approximations
DEFF Research Database (Denmark)
Kutyniok, Gitta; Lemvig, Jakob; Lim, Wang-Q
2012-01-01
Multivariate functions are typically governed by anisotropic features such as edges in images or shock fronts in solutions of transport-dominated equations. One major goal both for the purpose of compression as well as for an efficient analysis is the provision of optimally sparse approximations...... optimally sparse approximations of this model class in 2D as well as 3D. Even more, in contrast to all other directional representation systems, a theory for compactly supported shearlet frames was derived which moreover also satisfy this optimality benchmark. This chapter shall serve as an introduction...... to and a survey about sparse approximations of cartoon-like images by band-limited and also compactly supported shearlet frames as well as a reference for the state-of-the-art of this research field....
Multilevel sparse functional principal component analysis.
Di, Chongzhi; Crainiceanu, Ciprian M; Jank, Wolfgang S
2014-01-29
We consider analysis of sparsely sampled multilevel functional data, where the basic observational unit is a function and data have a natural hierarchy of basic units. An example is when functions are recorded at multiple visits for each subject. Multilevel functional principal component analysis (MFPCA; Di et al. 2009) was proposed for such data when functions are densely recorded. Here we consider the case when functions are sparsely sampled and may contain only a few observations per function. We exploit the multilevel structure of covariance operators and achieve data reduction by principal component decompositions at both between and within subject levels. We address inherent methodological differences in the sparse sampling context to: 1) estimate the covariance operators; 2) estimate the functional principal component scores; 3) predict the underlying curves. Through simulations the proposed method is able to discover dominating modes of variations and reconstruct underlying curves well even in sparse settings. Our approach is illustrated by two applications, the Sleep Heart Health Study and eBay auctions.
A sparse version of IGA solvers
Beck, Joakim; Sangalli, Giancarlo; Tamellini, Lorenzo
2017-01-01
Isogeometric Analysis (IGA) typically adopts tensor-product splines and NURBS as a basis for the approximation of the solution of PDEs. In this work, we investigate to which extent IGA solvers can benefit from the so-called sparse-grids construction in its combination technique form, which was first introduced in the early 90s in the context of the approximation of high-dimensional PDEs. The tests that we report show that, in accordance to the literature, a sparse grids construction can indeed be useful if the solution of the PDE at hand is sufficiently smooth. Sparse grids can also be useful in the case of non-smooth solutions when some a-priori knowledge on the location of the singularities of the solution can be exploited to devise suitable non-equispaced meshes. Finally, we remark that sparse grids can be seen as a simple way to parallelize pre-existing serial IGA solvers in a straightforward fashion, which can be beneficial in many practical situations.
A sparse version of IGA solvers
Beck, Joakim
2017-07-30
Isogeometric Analysis (IGA) typically adopts tensor-product splines and NURBS as a basis for the approximation of the solution of PDEs. In this work, we investigate to which extent IGA solvers can benefit from the so-called sparse-grids construction in its combination technique form, which was first introduced in the early 90s in the context of the approximation of high-dimensional PDEs. The tests that we report show that, in accordance to the literature, a sparse grids construction can indeed be useful if the solution of the PDE at hand is sufficiently smooth. Sparse grids can also be useful in the case of non-smooth solutions when some a-priori knowledge on the location of the singularities of the solution can be exploited to devise suitable non-equispaced meshes. Finally, we remark that sparse grids can be seen as a simple way to parallelize pre-existing serial IGA solvers in a straightforward fashion, which can be beneficial in many practical situations.
Language Recognition via Sparse Coding
2016-09-08
explanation is that sparse coding can achieve a near-optimal approximation of much complicated nonlinear relationship through local and piecewise linear...training examples, where x(i) ∈ RN is the ith example in the batch. Optionally, X can be normalized and whitened before sparse coding for better result...normalized input vectors are then ZCA- whitened [20]. Em- pirically, we choose ZCA- whitening over PCA- whitening , and there is no dimensionality reduction
Sparse seismic imaging using variable projection
Aravkin, Aleksandr Y.; Tu, Ning; van Leeuwen, Tristan
2013-01-01
We consider an important class of signal processing problems where the signal of interest is known to be sparse, and can be recovered from data given auxiliary information about how the data was generated. For example, a sparse Green's function may be recovered from seismic experimental data using
Tunable Sparse Network Coding for Multicast Networks
DEFF Research Database (Denmark)
Feizi, Soheil; Roetter, Daniel Enrique Lucani; Sørensen, Chres Wiant
2014-01-01
This paper shows the potential and key enabling mechanisms for tunable sparse network coding, a scheme in which the density of network coded packets varies during a transmission session. At the beginning of a transmission session, sparsely coded packets are transmitted, which benefits decoding...... complexity. At the end of a transmission, when receivers have accumulated degrees of freedom, coding density is increased. We propose a family of tunable sparse network codes (TSNCs) for multicast erasure networks with a controllable trade-off between completion time performance to decoding complexity...... a mechanism to perform efficient Gaussian elimination over sparse matrices going beyond belief propagation but maintaining low decoding complexity. Supporting simulation results are provided showing the trade-off between decoding complexity and completion time....
Sparse PCA with Oracle Property.
Gu, Quanquan; Wang, Zhaoran; Liu, Han
In this paper, we study the estimation of the k -dimensional sparse principal subspace of covariance matrix Σ in the high-dimensional setting. We aim to recover the oracle principal subspace solution, i.e., the principal subspace estimator obtained assuming the true support is known a priori. To this end, we propose a family of estimators based on the semidefinite relaxation of sparse PCA with novel regularizations. In particular, under a weak assumption on the magnitude of the population projection matrix, one estimator within this family exactly recovers the true support with high probability, has exact rank- k , and attains a [Formula: see text] statistical rate of convergence with s being the subspace sparsity level and n the sample size. Compared to existing support recovery results for sparse PCA, our approach does not hinge on the spiked covariance model or the limited correlation condition. As a complement to the first estimator that enjoys the oracle property, we prove that, another estimator within the family achieves a sharper statistical rate of convergence than the standard semidefinite relaxation of sparse PCA, even when the previous assumption on the magnitude of the projection matrix is violated. We validate the theoretical results by numerical experiments on synthetic datasets.
Zhang, Tianzhu; Yang, Ming-Hsuan; Ahuja, Narendra; Ghanem, Bernard; Yan, Shuicheng; Xu, Changsheng; Liu, Si
2015-01-01
candidate. We show that our SST algorithm accommodates most existing sparse trackers with the respective merits. Both qualitative and quantitative evaluations on challenging benchmark image sequences demonstrate that the proposed SST algorithm performs
Vegetation mapping of the Mond Protected Area of Bushehr Province (south-west Iran).
Mehrabian, Ahmadreza; Naqinezhad, Alireza; Mahiny, Abdolrassoul Salman; Mostafavi, Hossein; Liaghati, Homan; Kouchekzadeh, Mohsen
2009-03-01
Arid regions of the world occupy up to 35% of the earth's surface, the basis of various definitions of climatic conditions, vegetation types or potential for food production. Due to their high ecological value, monitoring of arid regions is necessary and modern vegetation studies can help in the conservation and management of these areas. The use of remote sensing for mapping of desert vegetation is difficult due to mixing of the spectral reflectance of bright desert soils with the weak spectral response of sparse vegetation. We studied the vegetation types in the semiarid to arid region of Mond Protected Area, south-west Iran, based on unsupervised classification of the Spot XS bands and then produced updated maps. Sixteen map units covering 12 vegetation types were recognized in the area based on both field works and satellite mapping. Halocnemum strobilaceum and Suaeda fruticosa vegetation types were the dominant types and Ephedra foliata, Salicornia europaea-Suaeda heterophylla vegetation types were the smallest. Vegetation coverage decreased sharply with the increase in salinity towards the coastal areas of the Persian Gulf. The highest vegetation coverage belonged to the riparian vegetation along the Mond River, which represents the northern boundary of the protected area. The location of vegetation types was studied on the separate soil and habitat diversity maps of the study area, which helped in final refinements of the vegetation map produced.
Technique detection software for Sparse Matrices
Directory of Open Access Journals (Sweden)
KHAN Muhammad Taimoor
2009-12-01
Full Text Available Sparse storage formats are techniques for storing and processing the sparse matrix data efficiently. The performance of these storage formats depend upon the distribution of non-zeros, within the matrix in different dimensions. In order to have better results we need a technique that suits best the organization of data in a particular matrix. So the decision of selecting a better technique is the main step towards improving the system's results otherwise the efficiency can be decreased. The purpose of this research is to help identify the best storage format in case of reduced storage size and high processing efficiency for a sparse matrix.
Sparse Representations of Hyperspectral Images
Swanson, Robin J.
2015-11-23
Hyperspectral image data has long been an important tool for many areas of sci- ence. The addition of spectral data yields significant improvements in areas such as object and image classification, chemical and mineral composition detection, and astronomy. Traditional capture methods for hyperspectral data often require each wavelength to be captured individually, or by sacrificing spatial resolution. Recently there have been significant improvements in snapshot hyperspectral captures using, in particular, compressed sensing methods. As we move to a compressed sensing image formation model the need for strong image priors to shape our reconstruction, as well as sparse basis become more important. Here we compare several several methods for representing hyperspectral images including learned three dimensional dictionaries, sparse convolutional coding, and decomposable nonlocal tensor dictionaries. Addi- tionally, we further explore their parameter space to identify which parameters provide the most faithful and sparse representations.
Sparse Representations of Hyperspectral Images
Swanson, Robin J.
2015-01-01
Hyperspectral image data has long been an important tool for many areas of sci- ence. The addition of spectral data yields significant improvements in areas such as object and image classification, chemical and mineral composition detection, and astronomy. Traditional capture methods for hyperspectral data often require each wavelength to be captured individually, or by sacrificing spatial resolution. Recently there have been significant improvements in snapshot hyperspectral captures using, in particular, compressed sensing methods. As we move to a compressed sensing image formation model the need for strong image priors to shape our reconstruction, as well as sparse basis become more important. Here we compare several several methods for representing hyperspectral images including learned three dimensional dictionaries, sparse convolutional coding, and decomposable nonlocal tensor dictionaries. Addi- tionally, we further explore their parameter space to identify which parameters provide the most faithful and sparse representations.
Supervised Convolutional Sparse Coding
Affara, Lama Ahmed
2018-04-08
Convolutional Sparse Coding (CSC) is a well-established image representation model especially suited for image restoration tasks. In this work, we extend the applicability of this model by proposing a supervised approach to convolutional sparse coding, which aims at learning discriminative dictionaries instead of purely reconstructive ones. We incorporate a supervised regularization term into the traditional unsupervised CSC objective to encourage the final dictionary elements to be discriminative. Experimental results show that using supervised convolutional learning results in two key advantages. First, we learn more semantically relevant filters in the dictionary and second, we achieve improved image reconstruction on unseen data.
Structure-aware Local Sparse Coding for Visual Tracking
Qi, Yuankai
2018-01-24
Sparse coding has been applied to visual tracking and related vision problems with demonstrated success in recent years. Existing tracking methods based on local sparse coding sample patches from a target candidate and sparsely encode these using a dictionary consisting of patches sampled from target template images. The discriminative strength of existing methods based on local sparse coding is limited as spatial structure constraints among the template patches are not exploited. To address this problem, we propose a structure-aware local sparse coding algorithm which encodes a target candidate using templates with both global and local sparsity constraints. For robust tracking, we show local regions of a candidate region should be encoded only with the corresponding local regions of the target templates that are the most similar from the global view. Thus, a more precise and discriminative sparse representation is obtained to account for appearance changes. To alleviate the issues with tracking drifts, we design an effective template update scheme. Extensive experiments on challenging image sequences demonstrate the effectiveness of the proposed algorithm against numerous stateof- the-art methods.
Sparse Frequency Waveform Design for Radar-Embedded Communication
Directory of Open Access Journals (Sweden)
Chaoyun Mai
2016-01-01
Full Text Available According to the Tag application with function of covert communication, a method for sparse frequency waveform design based on radar-embedded communication is proposed. Firstly, sparse frequency waveforms are designed based on power spectral density fitting and quasi-Newton method. Secondly, the eigenvalue decomposition of the sparse frequency waveform sequence is used to get the dominant space. Finally the communication waveforms are designed through the projection of orthogonal pseudorandom vectors in the vertical subspace. Compared with the linear frequency modulation waveform, the sparse frequency waveform can further improve the bandwidth occupation of communication signals, thus achieving higher communication rate. A certain correlation exists between the reciprocally orthogonal communication signals samples and the sparse frequency waveform, which guarantees the low SER (signal error rate and LPI (low probability of intercept. The simulation results verify the effectiveness of this method.
Effect of vegetation on soil moisture sensing observed from orbiting microwave radiometers
International Nuclear Information System (INIS)
Wang, J.R.
1985-01-01
The microwave radiometric measurements made by the Skylab 1.4 GHz radiometer and by the 6.6 GHz and 10.7 GHz channels of the Nimbus-7 Scanning Multichannel Microwave Radiometer were analyzed to study the large-area soil moisture variations of land surfaces. Two regions in Texas, one with sparse and the other with dense vegetation covers, were selected for the study. The results gave a confirmation of the vegetation effect observed by ground-level microwave radiometers. Based on the statistics of the satellite data, it was possible to estimate surface soil moisture in about five different levels from dry to wet conditions with a 1.4 GHz radiometer, provided that the biomass of the vegetation cover could be independently measured. At frequencies greater than about 6.6 GHz, the radiometric measurements showed little sensitivity to moisture variation for vegetation-covered soils. The effects of polarization in microwave emission were studied also. (author)
Massive Asynchronous Parallelization of Sparse Matrix Factorizations
Energy Technology Data Exchange (ETDEWEB)
Chow, Edmond [Georgia Inst. of Technology, Atlanta, GA (United States)
2018-01-08
Solving sparse problems is at the core of many DOE computational science applications. We focus on the challenge of developing sparse algorithms that can fully exploit the parallelism in extreme-scale computing systems, in particular systems with massive numbers of cores per node. Our approach is to express a sparse matrix factorization as a large number of bilinear constraint equations, and then solving these equations via an asynchronous iterative method. The unknowns in these equations are the matrix entries of the factorization that is desired.
Storage of sparse files using parallel log-structured file system
Bent, John M.; Faibish, Sorin; Grider, Gary; Torres, Aaron
2017-11-07
A sparse file is stored without holes by storing a data portion of the sparse file using a parallel log-structured file system; and generating an index entry for the data portion, the index entry comprising a logical offset, physical offset and length of the data portion. The holes can be restored to the sparse file upon a reading of the sparse file. The data portion can be stored at a logical end of the sparse file. Additional storage efficiency can optionally be achieved by (i) detecting a write pattern for a plurality of the data portions and generating a single patterned index entry for the plurality of the patterned data portions; and/or (ii) storing the patterned index entries for a plurality of the sparse files in a single directory, wherein each entry in the single directory comprises an identifier of a corresponding sparse file.
Sparse reconstruction using distribution agnostic bayesian matching pursuit
Masood, Mudassir
2013-11-01
A fast matching pursuit method using a Bayesian approach is introduced for sparse signal recovery. This method performs Bayesian estimates of sparse signals even when the signal prior is non-Gaussian or unknown. It is agnostic on signal statistics and utilizes a priori statistics of additive noise and the sparsity rate of the signal, which are shown to be easily estimated from data if not available. The method utilizes a greedy approach and order-recursive updates of its metrics to find the most dominant sparse supports to determine the approximate minimum mean-square error (MMSE) estimate of the sparse signal. Simulation results demonstrate the power and robustness of our proposed estimator. © 2013 IEEE.
Image understanding using sparse representations
Thiagarajan, Jayaraman J; Turaga, Pavan; Spanias, Andreas
2014-01-01
Image understanding has been playing an increasingly crucial role in several inverse problems and computer vision. Sparse models form an important component in image understanding, since they emulate the activity of neural receptors in the primary visual cortex of the human brain. Sparse methods have been utilized in several learning problems because of their ability to provide parsimonious, interpretable, and efficient models. Exploiting the sparsity of natural signals has led to advances in several application areas including image compression, denoising, inpainting, compressed sensing, blin
Sparse regularization for force identification using dictionaries
Qiao, Baijie; Zhang, Xingwu; Wang, Chenxi; Zhang, Hang; Chen, Xuefeng
2016-04-01
The classical function expansion method based on minimizing l2-norm of the response residual employs various basis functions to represent the unknown force. Its difficulty lies in determining the optimum number of basis functions. Considering the sparsity of force in the time domain or in other basis space, we develop a general sparse regularization method based on minimizing l1-norm of the coefficient vector of basis functions. The number of basis functions is adaptively determined by minimizing the number of nonzero components in the coefficient vector during the sparse regularization process. First, according to the profile of the unknown force, the dictionary composed of basis functions is determined. Second, a sparsity convex optimization model for force identification is constructed. Third, given the transfer function and the operational response, Sparse reconstruction by separable approximation (SpaRSA) is developed to solve the sparse regularization problem of force identification. Finally, experiments including identification of impact and harmonic forces are conducted on a cantilever thin plate structure to illustrate the effectiveness and applicability of SpaRSA. Besides the Dirac dictionary, other three sparse dictionaries including Db6 wavelets, Sym4 wavelets and cubic B-spline functions can also accurately identify both the single and double impact forces from highly noisy responses in a sparse representation frame. The discrete cosine functions can also successfully reconstruct the harmonic forces including the sinusoidal, square and triangular forces. Conversely, the traditional Tikhonov regularization method with the L-curve criterion fails to identify both the impact and harmonic forces in these cases.
Sparse inpainting and isotropy
Energy Technology Data Exchange (ETDEWEB)
Feeney, Stephen M.; McEwen, Jason D.; Peiris, Hiranya V. [Department of Physics and Astronomy, University College London, Gower Street, London, WC1E 6BT (United Kingdom); Marinucci, Domenico; Cammarota, Valentina [Department of Mathematics, University of Rome Tor Vergata, via della Ricerca Scientifica 1, Roma, 00133 (Italy); Wandelt, Benjamin D., E-mail: s.feeney@imperial.ac.uk, E-mail: marinucc@axp.mat.uniroma2.it, E-mail: jason.mcewen@ucl.ac.uk, E-mail: h.peiris@ucl.ac.uk, E-mail: wandelt@iap.fr, E-mail: cammarot@axp.mat.uniroma2.it [Kavli Institute for Theoretical Physics, Kohn Hall, University of California, 552 University Road, Santa Barbara, CA, 93106 (United States)
2014-01-01
Sparse inpainting techniques are gaining in popularity as a tool for cosmological data analysis, in particular for handling data which present masked regions and missing observations. We investigate here the relationship between sparse inpainting techniques using the spherical harmonic basis as a dictionary and the isotropy properties of cosmological maps, as for instance those arising from cosmic microwave background (CMB) experiments. In particular, we investigate the possibility that inpainted maps may exhibit anisotropies in the behaviour of higher-order angular polyspectra. We provide analytic computations and simulations of inpainted maps for a Gaussian isotropic model of CMB data, suggesting that the resulting angular trispectrum may exhibit small but non-negligible deviations from isotropy.
Object tracking by occlusion detection via structured sparse learning
Zhang, Tianzhu
2013-06-01
Sparse representation based methods have recently drawn much attention in visual tracking due to good performance against illumination variation and occlusion. They assume the errors caused by image variations can be modeled as pixel-wise sparse. However, in many practical scenarios these errors are not truly pixel-wise sparse but rather sparsely distributed in a structured way. In fact, pixels in error constitute contiguous regions within the object\\'s track. This is the case when significant occlusion occurs. To accommodate for non-sparse occlusion in a given frame, we assume that occlusion detected in previous frames can be propagated to the current one. This propagated information determines which pixels will contribute to the sparse representation of the current track. In other words, pixels that were detected as part of an occlusion in the previous frame will be removed from the target representation process. As such, this paper proposes a novel tracking algorithm that models and detects occlusion through structured sparse learning. We test our tracker on challenging benchmark sequences, such as sports videos, which involve heavy occlusion, drastic illumination changes, and large pose variations. Experimental results show that our tracker consistently outperforms the state-of-the-art. © 2013 IEEE.
Sparse Vector Distributions and Recovery from Compressed Sensing
DEFF Research Database (Denmark)
Sturm, Bob L.
It is well known that the performance of sparse vector recovery algorithms from compressive measurements can depend on the distribution underlying the non-zero elements of a sparse vector. However, the extent of these effects has yet to be explored, and formally presented. In this paper, I...... empirically investigate this dependence for seven distributions and fifteen recovery algorithms. The two morals of this work are: 1) any judgement of the recovery performance of one algorithm over that of another must be prefaced by the conditions for which this is observed to be true, including sparse vector...... distributions, and the criterion for exact recovery; and 2) a recovery algorithm must be selected carefully based on what distribution one expects to underlie the sensed sparse signal....
International Nuclear Information System (INIS)
Amundson, R.G.; Chadwick, O.A.; Sowers, J.M.; Doner, H.E.
1988-01-01
The relationship between the stable C-isotope composition of the soil environment and modern climate and vegetation was determined empirically along a present-day climatic transect in the eastern Mojave Desert. The δ 13 C of the soil CO 2 and carbonates decreased with increasing elevation and plant density, even though plant assemblages at all elevations were isotopically similar. Several factors, including differences in the ratios of pedogenic of limestone calcite and differences in past vegetation, were considered as explanations of this trend, However, it appears that in the sparsely vegetated Mojave Desert, the δ 13 C of pedogenic carbonate is controlled by differences in plant density and biological activity. This relationship may provide a tool for assessing past vegetational densities, as long as the vegetation is isotopically homogeneous. (author)
Exhaustive Search for Sparse Variable Selection in Linear Regression
Igarashi, Yasuhiko; Takenaka, Hikaru; Nakanishi-Ohno, Yoshinori; Uemura, Makoto; Ikeda, Shiro; Okada, Masato
2018-04-01
We propose a K-sparse exhaustive search (ES-K) method and a K-sparse approximate exhaustive search method (AES-K) for selecting variables in linear regression. With these methods, K-sparse combinations of variables are tested exhaustively assuming that the optimal combination of explanatory variables is K-sparse. By collecting the results of exhaustively computing ES-K, various approximate methods for selecting sparse variables can be summarized as density of states. With this density of states, we can compare different methods for selecting sparse variables such as relaxation and sampling. For large problems where the combinatorial explosion of explanatory variables is crucial, the AES-K method enables density of states to be effectively reconstructed by using the replica-exchange Monte Carlo method and the multiple histogram method. Applying the ES-K and AES-K methods to type Ia supernova data, we confirmed the conventional understanding in astronomy when an appropriate K is given beforehand. However, we found the difficulty to determine K from the data. Using virtual measurement and analysis, we argue that this is caused by data shortage.
A Sparse Approximate Inverse Preconditioner for Nonsymmetric Linear Systems
Czech Academy of Sciences Publication Activity Database
Benzi, M.; Tůma, Miroslav
1998-01-01
Roč. 19, č. 3 (1998), s. 968-994 ISSN 1064-8275 R&D Projects: GA ČR GA201/93/0067; GA AV ČR IAA230401 Keywords : large sparse systems * interative methods * preconditioning * approximate inverse * sparse linear systems * sparse matrices * incomplete factorizations * conjugate gradient -type methods Subject RIV: BA - General Mathematics Impact factor: 1.378, year: 1998
Structure-based bayesian sparse reconstruction
Quadeer, Ahmed Abdul
2012-12-01
Sparse signal reconstruction algorithms have attracted research attention due to their wide applications in various fields. In this paper, we present a simple Bayesian approach that utilizes the sparsity constraint and a priori statistical information (Gaussian or otherwise) to obtain near optimal estimates. In addition, we make use of the rich structure of the sensing matrix encountered in many signal processing applications to develop a fast sparse recovery algorithm. The computational complexity of the proposed algorithm is very low compared with the widely used convex relaxation methods as well as greedy matching pursuit techniques, especially at high sparsity. © 1991-2012 IEEE.
Greedy vs. L1 convex optimization in sparse coding
DEFF Research Database (Denmark)
Ren, Huamin; Pan, Hong; Olsen, Søren Ingvor
2015-01-01
Sparse representation has been applied successfully in many image analysis applications, including abnormal event detection, in which a baseline is to learn a dictionary from the training data and detect anomalies from its sparse codes. During this procedure, sparse codes which can be achieved...... solutions. Considering the property of abnormal event detection, i.e., only normal videos are used as training data due to practical reasons, effective codes in classification application may not perform well in abnormality detection. Therefore, we compare the sparse codes and comprehensively evaluate...... their performance from various aspects to better understand their applicability, including computation time, reconstruction error, sparsity, detection...
A sparse matrix based full-configuration interaction algorithm
International Nuclear Information System (INIS)
Rolik, Zoltan; Szabados, Agnes; Surjan, Peter R.
2008-01-01
We present an algorithm related to the full-configuration interaction (FCI) method that makes complete use of the sparse nature of the coefficient vector representing the many-electron wave function in a determinantal basis. Main achievements of the presented sparse FCI (SFCI) algorithm are (i) development of an iteration procedure that avoids the storage of FCI size vectors; (ii) development of an efficient algorithm to evaluate the effect of the Hamiltonian when both the initial and the product vectors are sparse. As a result of point (i) large disk operations can be skipped which otherwise may be a bottleneck of the procedure. At point (ii) we progress by adopting the implementation of the linear transformation by Olsen et al. [J. Chem Phys. 89, 2185 (1988)] for the sparse case, getting the algorithm applicable to larger systems and faster at the same time. The error of a SFCI calculation depends only on the dropout thresholds for the sparse vectors, and can be tuned by controlling the amount of system memory passed to the procedure. The algorithm permits to perform FCI calculations on single node workstations for systems previously accessible only by supercomputers
An in-depth study of sparse codes on abnormality detection
DEFF Research Database (Denmark)
Ren, Huamin; Pan, Hong; Olsen, Søren Ingvor
2016-01-01
Sparse representation has been applied successfully in abnormal event detection, in which the baseline is to learn a dictionary accompanied by sparse codes. While much emphasis is put on discriminative dictionary construction, there are no comparative studies of sparse codes regarding abnormality...... are carried out from various angles to better understand the applicability of sparse codes, including computation time, reconstruction error, sparsity, detection accuracy, and their performance combining various detection methods. The experiment results show that combining OMP codes with maximum coordinate...
Sparse Principal Component Analysis in Medical Shape Modeling
DEFF Research Database (Denmark)
Sjöstrand, Karl; Stegmann, Mikkel Bille; Larsen, Rasmus
2006-01-01
Principal component analysis (PCA) is a widely used tool in medical image analysis for data reduction, model building, and data understanding and exploration. While PCA is a holistic approach where each new variable is a linear combination of all original variables, sparse PCA (SPCA) aims...... analysis in medicine. Results for three different data sets are given in relation to standard PCA and sparse PCA by simple thresholding of sufficiently small loadings. Focus is on a recent algorithm for computing sparse principal components, but a review of other approaches is supplied as well. The SPCA...
Sparse reconstruction using distribution agnostic bayesian matching pursuit
Masood, Mudassir; Al-Naffouri, Tareq Y.
2013-01-01
A fast matching pursuit method using a Bayesian approach is introduced for sparse signal recovery. This method performs Bayesian estimates of sparse signals even when the signal prior is non-Gaussian or unknown. It is agnostic on signal statistics
Energy Technology Data Exchange (ETDEWEB)
Holec, M.; Frouz, J.; Pokorny, R. [Academy of Science Czech Republic, Ceske Budejovice (Czech Republic). Inst. of Soil Biology
2006-07-15
A study was carried out during 2001 on mine tailings in NW Bohemia aimed at describing the spatial patterns of nests distribution and epigeic activity of ants in relation to the vegetation mosaic. Lasius niger was the most abundant species of ant and its nest mounds were significantly more numerous in patches with sparse vegetation than inside dense Calamagrostis epigejos vegetation; this was particularly true for small and medium-sized nests. Small and medium nests also occurred more frequently near the edges of a given patch than in the center. Large and medium nests were randomly distributed in the area, whereas small nests had an aggregated distribution. Pitfall trapping reveal significantly higher activity of L. niger workers in tall and dense vegetation stands in comparison with low and sparse vegetation. This pattern was particularly pronounced during the peak of foraging activity in summer and was not so significant in spring or autumn. We expect that ants preferentially forage in shaded habitats during the summer months when bare soil may be too hot. The results indicated that nesting and foraging may differ in their microclimatic requirements and the formation of vegetation mosaics may be important to changes in the ant population during succession.
User's Manual for PCSMS (Parallel Complex Sparse Matrix Solver). Version 1.
Reddy, C. J.
2000-01-01
PCSMS (Parallel Complex Sparse Matrix Solver) is a computer code written to make use of the existing real sparse direct solvers to solve complex, sparse matrix linear equations. PCSMS converts complex matrices into real matrices and use real, sparse direct matrix solvers to factor and solve the real matrices. The solution vector is reconverted to complex numbers. Though, this utility is written for Silicon Graphics (SGI) real sparse matrix solution routines, it is general in nature and can be easily modified to work with any real sparse matrix solver. The User's Manual is written to make the user acquainted with the installation and operation of the code. Driver routines are given to aid the users to integrate PCSMS routines in their own codes.
Parallel transposition of sparse data structures
DEFF Research Database (Denmark)
Wang, Hao; Liu, Weifeng; Hou, Kaixi
2016-01-01
Many applications in computational sciences and social sciences exploit sparsity and connectivity of acquired data. Even though many parallel sparse primitives such as sparse matrix-vector (SpMV) multiplication have been extensively studied, some other important building blocks, e.g., parallel tr...... transposition in the latest vendor-supplied library on an Intel multicore CPU platform, and the MergeTrans approach achieves on average of 3.4-fold (up to 11.7-fold) speedup on an Intel Xeon Phi many-core processor....
Numerical solution of large sparse linear systems
International Nuclear Information System (INIS)
Meurant, Gerard; Golub, Gene.
1982-02-01
This note is based on one of the lectures given at the 1980 CEA-EDF-INRIA Numerical Analysis Summer School whose aim is the study of large sparse linear systems. The main topics are solving least squares problems by orthogonal transformation, fast Poisson solvers and solution of sparse linear system by iterative methods with a special emphasis on preconditioned conjuguate gradient method [fr
Sparse Source EEG Imaging with the Variational Garrote
DEFF Research Database (Denmark)
Hansen, Sofie Therese; Stahlhut, Carsten; Hansen, Lars Kai
2013-01-01
EEG imaging, the estimation of the cortical source distribution from scalp electrode measurements, poses an extremely ill-posed inverse problem. Recent work by Delorme et al. (2012) supports the hypothesis that distributed source solutions are sparse. We show that direct search for sparse solutions...
Low-count PET image restoration using sparse representation
Li, Tao; Jiang, Changhui; Gao, Juan; Yang, Yongfeng; Liang, Dong; Liu, Xin; Zheng, Hairong; Hu, Zhanli
2018-04-01
In the field of positron emission tomography (PET), reconstructed images are often blurry and contain noise. These problems are primarily caused by the low resolution of projection data. Solving this problem by improving hardware is an expensive solution, and therefore, we attempted to develop a solution based on optimizing several related algorithms in both the reconstruction and image post-processing domains. As sparse technology is widely used, sparse prediction is increasingly applied to solve this problem. In this paper, we propose a new sparse method to process low-resolution PET images. Two dictionaries (D1 for low-resolution PET images and D2 for high-resolution PET images) are learned from a group real PET image data sets. Among these two dictionaries, D1 is used to obtain a sparse representation for each patch of the input PET image. Then, a high-resolution PET image is generated from this sparse representation using D2. Experimental results indicate that the proposed method exhibits a stable and superior ability to enhance image resolution and recover image details. Quantitatively, this method achieves better performance than traditional methods. This proposed strategy is a new and efficient approach for improving the quality of PET images.
X-ray computed tomography using curvelet sparse regularization.
Wieczorek, Matthias; Frikel, Jürgen; Vogel, Jakob; Eggl, Elena; Kopp, Felix; Noël, Peter B; Pfeiffer, Franz; Demaret, Laurent; Lasser, Tobias
2015-04-01
Reconstruction of x-ray computed tomography (CT) data remains a mathematically challenging problem in medical imaging. Complementing the standard analytical reconstruction methods, sparse regularization is growing in importance, as it allows inclusion of prior knowledge. The paper presents a method for sparse regularization based on the curvelet frame for the application to iterative reconstruction in x-ray computed tomography. In this work, the authors present an iterative reconstruction approach based on the alternating direction method of multipliers using curvelet sparse regularization. Evaluation of the method is performed on a specifically crafted numerical phantom dataset to highlight the method's strengths. Additional evaluation is performed on two real datasets from commercial scanners with different noise characteristics, a clinical bone sample acquired in a micro-CT and a human abdomen scanned in a diagnostic CT. The results clearly illustrate that curvelet sparse regularization has characteristic strengths. In particular, it improves the restoration and resolution of highly directional, high contrast features with smooth contrast variations. The authors also compare this approach to the popular technique of total variation and to traditional filtered backprojection. The authors conclude that curvelet sparse regularization is able to improve reconstruction quality by reducing noise while preserving highly directional features.
Ecogeomorphology of Sand Dunes Shaped by Vegetation
Tsoar, H.
2014-12-01
Two dune types associated with vegetation are known: Parabolic and Vegetated Linear Dunes (VLDs), the latters are the dominant dune type in the world deserts. Parabolic dunes are formed in humid, sub-humid and semi-arid environments (rather than arid) where vegetation is nearby. VLDs are known today in semiarid and arid lands where the average yearly rainfall is ≥100 mm, enough to support sparse cover of vegetation. These two dune types are formed by unidirectional winds although they demonstrate a different form and have a distinct dynamics. Conceptual and mathematical models of dunes mobility and stability, based on three control parameters: wind power (DP), average annual precipitation (p), and the human impact parameter (μ) show that where human impact is negligible the effect of wind power (DP) on vegetative cover is substantial. The average yearly rainfall of 60-80 mm is the threshold of annual average rainfall for vegetation growth on dune sand. The model is shown to follow a hysteresis path, which explains the bistability of active and stabilized dunes under the same climatic conditions with respect to wind power. We have discerned formation of parabolic dunes from barchans and transverse dunes in the coastal plain of Israel where a decrease in human activity during the second half of the 20th century caused establishment of vegetation on the crest of the dunes, a process that changed the dynamics of these barchans and transverse dunes and led to a change in the shape of the windward slope from convex to concave. These dunes gradually became parabolic. It seems that VLDs in Australia or the Kalahari have always been vegetated to some degree, though the shrubs were sparser in colder periods when the aeolian erosion was sizeable. Those ancient conditions are characterized by higher wind power and lower rainfall that can reduce, but not completely destroy, the vegetation cover, leading to the formation of lee (shadow) dunes behind each shrub. Formation of
Sparse dictionary for synthetic transmit aperture medical ultrasound imaging.
Wang, Ping; Jiang, Jin-Yang; Li, Na; Luo, Han-Wu; Li, Fang; Cui, Shi-Gang
2017-07-01
It is possible to recover a signal below the Nyquist sampling limit using a compressive sensing technique in ultrasound imaging. However, the reconstruction enabled by common sparse transform approaches does not achieve satisfactory results. Considering the ultrasound echo signal's features of attenuation, repetition, and superposition, a sparse dictionary with the emission pulse signal is proposed. Sparse coefficients in the proposed dictionary have high sparsity. Images reconstructed with this dictionary were compared with those obtained with the three other common transforms, namely, discrete Fourier transform, discrete cosine transform, and discrete wavelet transform. The performance of the proposed dictionary was analyzed via a simulation and experimental data. The mean absolute error (MAE) was used to quantify the quality of the reconstructions. Experimental results indicate that the MAE associated with the proposed dictionary was always the smallest, the reconstruction time required was the shortest, and the lateral resolution and contrast of the reconstructed images were also the closest to the original images. The proposed sparse dictionary performed better than the other three sparse transforms. With the same sampling rate, the proposed dictionary achieved excellent reconstruction quality.
A sparse electromagnetic imaging scheme using nonlinear landweber iterations
Desmal, Abdulla; Bagci, Hakan
2015-01-01
Development and use of electromagnetic inverse scattering techniques for imagining sparse domains have been on the rise following the recent advancements in solving sparse optimization problems. Existing techniques rely on iteratively converting
Scalable group level probabilistic sparse factor analysis
DEFF Research Database (Denmark)
Hinrich, Jesper Løve; Nielsen, Søren Føns Vind; Riis, Nicolai Andre Brogaard
2017-01-01
Many data-driven approaches exist to extract neural representations of functional magnetic resonance imaging (fMRI) data, but most of them lack a proper probabilistic formulation. We propose a scalable group level probabilistic sparse factor analysis (psFA) allowing spatially sparse maps, component...... pruning using automatic relevance determination (ARD) and subject specific heteroscedastic spatial noise modeling. For task-based and resting state fMRI, we show that the sparsity constraint gives rise to components similar to those obtained by group independent component analysis. The noise modeling...... shows that noise is reduced in areas typically associated with activation by the experimental design. The psFA model identifies sparse components and the probabilistic setting provides a natural way to handle parameter uncertainties. The variational Bayesian framework easily extends to more complex...
Fast wavelet based sparse approximate inverse preconditioner
Energy Technology Data Exchange (ETDEWEB)
Wan, W.L. [Univ. of California, Los Angeles, CA (United States)
1996-12-31
Incomplete LU factorization is a robust preconditioner for both general and PDE problems but unfortunately not easy to parallelize. Recent study of Huckle and Grote and Chow and Saad showed that sparse approximate inverse could be a potential alternative while readily parallelizable. However, for special class of matrix A that comes from elliptic PDE problems, their preconditioners are not optimal in the sense that independent of mesh size. A reason may be that no good sparse approximate inverse exists for the dense inverse matrix. Our observation is that for this kind of matrices, its inverse entries typically have piecewise smooth changes. We can take advantage of this fact and use wavelet compression techniques to construct a better sparse approximate inverse preconditioner. We shall show numerically that our approach is effective for this kind of matrices.
Local posterior concentration rate for multilevel sparse sequences
Belitser, E.N.; Nurushev, N.
2017-01-01
We consider empirical Bayesian inference in the many normal means model in the situation when the high-dimensional mean vector is multilevel sparse, that is,most of the entries of the parameter vector are some fixed values. For instance, the traditional sparse signal is a particular case (with one
Sparse modeling of spatial environmental variables associated with asthma.
Chang, Timothy S; Gangnon, Ronald E; David Page, C; Buckingham, William R; Tandias, Aman; Cowan, Kelly J; Tomasallo, Carrie D; Arndt, Brian G; Hanrahan, Lawrence P; Guilbert, Theresa W
2015-02-01
Geographically distributed environmental factors influence the burden of diseases such as asthma. Our objective was to identify sparse environmental variables associated with asthma diagnosis gathered from a large electronic health record (EHR) dataset while controlling for spatial variation. An EHR dataset from the University of Wisconsin's Family Medicine, Internal Medicine and Pediatrics Departments was obtained for 199,220 patients aged 5-50years over a three-year period. Each patient's home address was geocoded to one of 3456 geographic census block groups. Over one thousand block group variables were obtained from a commercial database. We developed a Sparse Spatial Environmental Analysis (SASEA). Using this method, the environmental variables were first dimensionally reduced with sparse principal component analysis. Logistic thin plate regression spline modeling was then used to identify block group variables associated with asthma from sparse principal components. The addresses of patients from the EHR dataset were distributed throughout the majority of Wisconsin's geography. Logistic thin plate regression spline modeling captured spatial variation of asthma. Four sparse principal components identified via model selection consisted of food at home, dog ownership, household size, and disposable income variables. In rural areas, dog ownership and renter occupied housing units from significant sparse principal components were associated with asthma. Our main contribution is the incorporation of sparsity in spatial modeling. SASEA sequentially added sparse principal components to Logistic thin plate regression spline modeling. This method allowed association of geographically distributed environmental factors with asthma using EHR and environmental datasets. SASEA can be applied to other diseases with environmental risk factors. Copyright © 2014 Elsevier Inc. All rights reserved.
Analog system for computing sparse codes
Rozell, Christopher John; Johnson, Don Herrick; Baraniuk, Richard Gordon; Olshausen, Bruno A.; Ortman, Robert Lowell
2010-08-24
A parallel dynamical system for computing sparse representations of data, i.e., where the data can be fully represented in terms of a small number of non-zero code elements, and for reconstructing compressively sensed images. The system is based on the principles of thresholding and local competition that solves a family of sparse approximation problems corresponding to various sparsity metrics. The system utilizes Locally Competitive Algorithms (LCAs), nodes in a population continually compete with neighboring units using (usually one-way) lateral inhibition to calculate coefficients representing an input in an over complete dictionary.
Decreased surface albedo driven by denser vegetation on the Tibetan Plateau
International Nuclear Information System (INIS)
Tian, Li; Zhang, Yangjian; Zhu, Juntao
2014-01-01
The Tibetan Plateau (TP) has fundamental ecological and environmental significance to China and Asia through its influence on regional and continental climates. In recent years, climate warming has caused unprecedented changes to land surface processes on the TP, which would unavoidably undermine the ecological and environmental functions of the TP. Among the numerous land surface processes potentially impacted by climate warming, the effect of vegetation greenness on surface energy balance is one of the most critical, but has been long ignored. In this study, we investigated the spatial and temporal patterns of land surface albedo (LSA) on the TP and evaluated the vegetation greenness in relation to patterns of LSA. We found that LSA has been decreasing in most of the vegetated grasslands on the TP from 2000 to 2013, as compared to a flat trend for desert area. The regions where LSA has been decreasing were spatially correlated to areas of increased vegetation greenness. Along rising altitude, LSA decreasing rate exhibited an overall decreasing trend. Across the TP, elevated vegetation greenness in grasslands acted as a primary factor pulling down LSA. The driving effects of vegetation greenness on LSA vary with grassland types, as revealed by a more significant relationship between vegetation greenness and LSA for the sparsely vegetated zone (i.e. steppe) than the more densely vegetated zone (i.e. meadow). Furthermore, the driving effect of vegetation greenness on LSA exhibited an obvious dependence on altitude as effects with rising altitude were relatively strong up to 3000 m, then weakened from 3500 m to 5000 m, and then the effects again increased from 5000 to 6000 m. The growing season LSA trend revealed in this study emphasizes the need to give greater attention to the growing season LSA flux in future surface energy balance studies. (letter)
Efficient Pseudorecursive Evaluation Schemes for Non-adaptive Sparse Grids
Buse, Gerrit; Pflü ger, Dirk; Jacob, Riko
2014-01-01
In this work we propose novel algorithms for storing and evaluating sparse grid functions, operating on regular (not spatially adaptive), yet potentially dimensionally adaptive grid types. Besides regular sparse grids our approach includes truncated
Occlusion detection via structured sparse learning for robust object tracking
Zhang, Tianzhu
2014-01-01
Sparse representation based methods have recently drawn much attention in visual tracking due to good performance against illumination variation and occlusion. They assume the errors caused by image variations can be modeled as pixel-wise sparse. However, in many practical scenarios, these errors are not truly pixel-wise sparse but rather sparsely distributed in a structured way. In fact, pixels in error constitute contiguous regions within the object’s track. This is the case when significant occlusion occurs. To accommodate for nonsparse occlusion in a given frame, we assume that occlusion detected in previous frames can be propagated to the current one. This propagated information determines which pixels will contribute to the sparse representation of the current track. In other words, pixels that were detected as part of an occlusion in the previous frame will be removed from the target representation process. As such, this paper proposes a novel tracking algorithm that models and detects occlusion through structured sparse learning. We test our tracker on challenging benchmark sequences, such as sports videos, which involve heavy occlusion, drastic illumination changes, and large pose variations. Extensive experimental results show that our proposed tracker consistently outperforms the state-of-the-art trackers.
Sparse Representation Based SAR Vehicle Recognition along with Aspect Angle
Directory of Open Access Journals (Sweden)
Xiangwei Xing
2014-01-01
Full Text Available As a method of representing the test sample with few training samples from an overcomplete dictionary, sparse representation classification (SRC has attracted much attention in synthetic aperture radar (SAR automatic target recognition (ATR recently. In this paper, we develop a novel SAR vehicle recognition method based on sparse representation classification along with aspect information (SRCA, in which the correlation between the vehicle’s aspect angle and the sparse representation vector is exploited. The detailed procedure presented in this paper can be summarized as follows. Initially, the sparse representation vector of a test sample is solved by sparse representation algorithm with a principle component analysis (PCA feature-based dictionary. Then, the coefficient vector is projected onto a sparser one within a certain range of the vehicle’s aspect angle. Finally, the vehicle is classified into a certain category that minimizes the reconstruction error with the novel sparse representation vector. Extensive experiments are conducted on the moving and stationary target acquisition and recognition (MSTAR dataset and the results demonstrate that the proposed method performs robustly under the variations of depression angle and target configurations, as well as incomplete observation.
Learning sparse generative models of audiovisual signals
Monaci, Gianluca; Sommer, Friedrich T.; Vandergheynst, Pierre
2008-01-01
This paper presents a novel framework to learn sparse represen- tations for audiovisual signals. An audiovisual signal is modeled as a sparse sum of audiovisual kernels. The kernels are bimodal functions made of synchronous audio and video components that can be positioned independently and arbitrarily in space and time. We design an algorithm capable of learning sets of such audiovi- sual, synchronous, shift-invariant functions by alternatingly solving a coding and a learning pr...
Support agnostic Bayesian matching pursuit for block sparse signals
Masood, Mudassir
2013-05-01
A fast matching pursuit method using a Bayesian approach is introduced for block-sparse signal recovery. This method performs Bayesian estimates of block-sparse signals even when the distribution of active blocks is non-Gaussian or unknown. It is agnostic to the distribution of active blocks in the signal and utilizes a priori statistics of additive noise and the sparsity rate of the signal, which are shown to be easily estimated from data and no user intervention is required. The method requires a priori knowledge of block partition and utilizes a greedy approach and order-recursive updates of its metrics to find the most dominant sparse supports to determine the approximate minimum mean square error (MMSE) estimate of the block-sparse signal. Simulation results demonstrate the power and robustness of our proposed estimator. © 2013 IEEE.
Preconditioned Inexact Newton for Nonlinear Sparse Electromagnetic Imaging
Desmal, Abdulla
2014-05-04
Newton-type algorithms have been extensively studied in nonlinear microwave imaging due to their quadratic convergence rate and ability to recover images with high contrast values. In the past, Newton methods have been implemented in conjunction with smoothness promoting optimization/regularization schemes. However, this type of regularization schemes are known to perform poorly when applied in imagining domains with sparse content or sharp variations. In this work, an inexact Newton algorithm is formulated and implemented in conjunction with a linear sparse optimization scheme. A novel preconditioning technique is proposed to increase the convergence rate of the optimization problem. Numerical results demonstrate that the proposed framework produces sharper and more accurate images when applied in sparse/sparsified domains.
Preconditioned Inexact Newton for Nonlinear Sparse Electromagnetic Imaging
Desmal, Abdulla
2014-01-06
Newton-type algorithms have been extensively studied in nonlinear microwave imaging due to their quadratic convergence rate and ability to recover images with high contrast values. In the past, Newton methods have been implemented in conjunction with smoothness promoting optimization/regularization schemes. However, this type of regularization schemes are known to perform poorly when applied in imagining domains with sparse content or sharp variations. In this work, an inexact Newton algorithm is formulated and implemented in conjunction with a linear sparse optimization scheme. A novel preconditioning technique is proposed to increase the convergence rate of the optimization problem. Numerical results demonstrate that the proposed framework produces sharper and more accurate images when applied in sparse/sparsified domains.
Electromagnetic Formation Flight (EMFF) for Sparse Aperture Arrays
Kwon, Daniel W.; Miller, David W.; Sedwick, Raymond J.
2004-01-01
Traditional methods of actuating spacecraft in sparse aperture arrays use propellant as a reaction mass. For formation flying systems, propellant becomes a critical consumable which can be quickly exhausted while maintaining relative orientation. Additional problems posed by propellant include optical contamination, plume impingement, thermal emission, and vibration excitation. For these missions where control of relative degrees of freedom is important, we consider using a system of electromagnets, in concert with reaction wheels, to replace the consumables. Electromagnetic Formation Flight sparse apertures, powered by solar energy, are designed differently from traditional propulsion systems, which are based on V. This paper investigates the design of sparse apertures both inside and outside the Earth's gravity field.
Preconditioned Inexact Newton for Nonlinear Sparse Electromagnetic Imaging
Desmal, Abdulla; Bagci, Hakan
2014-01-01
Newton-type algorithms have been extensively studied in nonlinear microwave imaging due to their quadratic convergence rate and ability to recover images with high contrast values. In the past, Newton methods have been implemented in conjunction with smoothness promoting optimization/regularization schemes. However, this type of regularization schemes are known to perform poorly when applied in imagining domains with sparse content or sharp variations. In this work, an inexact Newton algorithm is formulated and implemented in conjunction with a linear sparse optimization scheme. A novel preconditioning technique is proposed to increase the convergence rate of the optimization problem. Numerical results demonstrate that the proposed framework produces sharper and more accurate images when applied in sparse/sparsified domains.
A comprehensive study of sparse codes on abnormality detection
DEFF Research Database (Denmark)
Ren, Huamin; Pan, Hong; Olsen, Søren Ingvor
2017-01-01
Sparse representation has been applied successfully in abnor-mal event detection, in which the baseline is to learn a dic-tionary accompanied by sparse codes. While much empha-sis is put on discriminative dictionary construction, there areno comparative studies of sparse codes regarding abnormal-ity...... detection. We comprehensively study two types of sparsecodes solutions - greedy algorithms and convex L1-norm so-lutions - and their impact on abnormality detection perfor-mance. We also propose our framework of combining sparsecodes with different detection methods. Our comparative ex-periments are carried...
Support agnostic Bayesian matching pursuit for block sparse signals
Masood, Mudassir; Al-Naffouri, Tareq Y.
2013-01-01
priori knowledge of block partition and utilizes a greedy approach and order-recursive updates of its metrics to find the most dominant sparse supports to determine the approximate minimum mean square error (MMSE) estimate of the block-sparse signal
Selectivity and sparseness in randomly connected balanced networks.
Directory of Open Access Journals (Sweden)
Cengiz Pehlevan
Full Text Available Neurons in sensory cortex show stimulus selectivity and sparse population response, even in cases where no strong functionally specific structure in connectivity can be detected. This raises the question whether selectivity and sparseness can be generated and maintained in randomly connected networks. We consider a recurrent network of excitatory and inhibitory spiking neurons with random connectivity, driven by random projections from an input layer of stimulus selective neurons. In this architecture, the stimulus-to-stimulus and neuron-to-neuron modulation of total synaptic input is weak compared to the mean input. Surprisingly, we show that in the balanced state the network can still support high stimulus selectivity and sparse population response. In the balanced state, strong synapses amplify the variation in synaptic input and recurrent inhibition cancels the mean. Functional specificity in connectivity emerges due to the inhomogeneity caused by the generative statistical rule used to build the network. We further elucidate the mechanism behind and evaluate the effects of model parameters on population sparseness and stimulus selectivity. Network response to mixtures of stimuli is investigated. It is shown that a balanced state with unselective inhibition can be achieved with densely connected input to inhibitory population. Balanced networks exhibit the "paradoxical" effect: an increase in excitatory drive to inhibition leads to decreased inhibitory population firing rate. We compare and contrast selectivity and sparseness generated by the balanced network to randomly connected unbalanced networks. Finally, we discuss our results in light of experiments.
SPARSE ELECTROMAGNETIC IMAGING USING NONLINEAR LANDWEBER ITERATIONS
Desmal, Abdulla
2015-07-29
A scheme for efficiently solving the nonlinear electromagnetic inverse scattering problem on sparse investigation domains is described. The proposed scheme reconstructs the (complex) dielectric permittivity of an investigation domain from fields measured away from the domain itself. Least-squares data misfit between the computed scattered fields, which are expressed as a nonlinear function of the permittivity, and the measured fields is constrained by the L0/L1-norm of the solution. The resulting minimization problem is solved using nonlinear Landweber iterations, where at each iteration a thresholding function is applied to enforce the sparseness-promoting L0/L1-norm constraint. The thresholded nonlinear Landweber iterations are applied to several two-dimensional problems, where the ``measured\\'\\' fields are synthetically generated or obtained from actual experiments. These numerical experiments demonstrate the accuracy, efficiency, and applicability of the proposed scheme in reconstructing sparse profiles with high permittivity values.
Vector sparse representation of color image using quaternion matrix analysis.
Xu, Yi; Yu, Licheng; Xu, Hongteng; Zhang, Hao; Nguyen, Truong
2015-04-01
Traditional sparse image models treat color image pixel as a scalar, which represents color channels separately or concatenate color channels as a monochrome image. In this paper, we propose a vector sparse representation model for color images using quaternion matrix analysis. As a new tool for color image representation, its potential applications in several image-processing tasks are presented, including color image reconstruction, denoising, inpainting, and super-resolution. The proposed model represents the color image as a quaternion matrix, where a quaternion-based dictionary learning algorithm is presented using the K-quaternion singular value decomposition (QSVD) (generalized K-means clustering for QSVD) method. It conducts the sparse basis selection in quaternion space, which uniformly transforms the channel images to an orthogonal color space. In this new color space, it is significant that the inherent color structures can be completely preserved during vector reconstruction. Moreover, the proposed sparse model is more efficient comparing with the current sparse models for image restoration tasks due to lower redundancy between the atoms of different color channels. The experimental results demonstrate that the proposed sparse image model avoids the hue bias issue successfully and shows its potential as a general and powerful tool in color image analysis and processing domain.
Gallé, Róbert; Urák, István; Nikolett, Gallé-Szpisjak; Hartel, Tibor
2017-01-01
The integration of food production and biodiversity conservation represents a key challenge for sustainability. Several studies suggest that even small structural elements in the landscape can make a substantial contribution to the overall biodiversity value of the agricultural landscapes. Pastures can have high biodiversity potential. However, their intensive and monofunctional use typically erodes its natural capital, including biodiversity. Here we address the ecological value of fine scale structural elements represented by sparsely scattered trees and shrubs for the spider communities in a moderately intensively grazed pasture in Transylvania, Eastern Europe. The pasture was grazed with sheep, cattle and buffalo (ca 1 Livestock Unit ha-1) and no chemical fertilizers were applied. Sampling sites covered the open pasture as well as the existing fine-scale heterogeneity created by scattered trees and shrub. 40 sampling locations each being represented by three 1 m2 quadrats were situated in a stratified design while assuring spatial independency of sampling locations. We identified 140 species of spiders, out of which 18 were red listed and four were new for the Romanian fauna. Spider species assemblages of open pasture, scattered trees, trees and shrubs and the forest edge were statistically distinct. Our study shows that sparsely scattered mature woody vegetation and shrubs substantially increases the ecological value of managed pastures. The structural complexity provided by scattered trees and shrubs makes possible the co-occurrence of high spider diversity with a moderately high intensity grazing possible in this wood-pasture. Our results are in line with recent empirical research showing that sparse trees and shrubs increases the biodiversity potential of pastures managed for commodity production.
Fast convolutional sparse coding using matrix inversion lemma
Czech Academy of Sciences Publication Activity Database
Šorel, Michal; Šroubek, Filip
2016-01-01
Roč. 55, č. 1 (2016), s. 44-51 ISSN 1051-2004 R&D Projects: GA ČR GA13-29225S Institutional support: RVO:67985556 Keywords : Convolutional sparse coding * Feature learning * Deconvolution networks * Shift-invariant sparse coding Subject RIV: JD - Computer Applications, Robotics Impact factor: 2.337, year: 2016 http://library.utia.cas.cz/separaty/2016/ZOI/sorel-0459332.pdf
Structure-based bayesian sparse reconstruction
Quadeer, Ahmed Abdul; Al-Naffouri, Tareq Y.
2012-01-01
Sparse signal reconstruction algorithms have attracted research attention due to their wide applications in various fields. In this paper, we present a simple Bayesian approach that utilizes the sparsity constraint and a priori statistical
Binary Sparse Phase Retrieval via Simulated Annealing
Directory of Open Access Journals (Sweden)
Wei Peng
2016-01-01
Full Text Available This paper presents the Simulated Annealing Sparse PhAse Recovery (SASPAR algorithm for reconstructing sparse binary signals from their phaseless magnitudes of the Fourier transform. The greedy strategy version is also proposed for a comparison, which is a parameter-free algorithm. Sufficient numeric simulations indicate that our method is quite effective and suggest the binary model is robust. The SASPAR algorithm seems competitive to the existing methods for its efficiency and high recovery rate even with fewer Fourier measurements.
Confidence of model based shape reconstruction from sparse data
DEFF Research Database (Denmark)
Baka, N.; de Bruijne, Marleen; Reiber, J. H. C.
2010-01-01
Statistical shape models (SSM) are commonly applied for plausible interpolation of missing data in medical imaging. However, when fitting a shape model to sparse information, many solutions may fit the available data. In this paper we derive a constrained SSM to fit noisy sparse input landmarks...
Proportionate Minimum Error Entropy Algorithm for Sparse System Identification
Directory of Open Access Journals (Sweden)
Zongze Wu
2015-08-01
Full Text Available Sparse system identification has received a great deal of attention due to its broad applicability. The proportionate normalized least mean square (PNLMS algorithm, as a popular tool, achieves excellent performance for sparse system identification. In previous studies, most of the cost functions used in proportionate-type sparse adaptive algorithms are based on the mean square error (MSE criterion, which is optimal only when the measurement noise is Gaussian. However, this condition does not hold in most real-world environments. In this work, we use the minimum error entropy (MEE criterion, an alternative to the conventional MSE criterion, to develop the proportionate minimum error entropy (PMEE algorithm for sparse system identification, which may achieve much better performance than the MSE based methods especially in heavy-tailed non-Gaussian situations. Moreover, we analyze the convergence of the proposed algorithm and derive a sufficient condition that ensures the mean square convergence. Simulation results confirm the excellent performance of the new algorithm.
Sparse PDF Volumes for Consistent Multi-Resolution Volume Rendering
Sicat, Ronell Barrera
2014-12-31
This paper presents a new multi-resolution volume representation called sparse pdf volumes, which enables consistent multi-resolution volume rendering based on probability density functions (pdfs) of voxel neighborhoods. These pdfs are defined in the 4D domain jointly comprising the 3D volume and its 1D intensity range. Crucially, the computation of sparse pdf volumes exploits data coherence in 4D, resulting in a sparse representation with surprisingly low storage requirements. At run time, we dynamically apply transfer functions to the pdfs using simple and fast convolutions. Whereas standard low-pass filtering and down-sampling incur visible differences between resolution levels, the use of pdfs facilitates consistent results independent of the resolution level used. We describe the efficient out-of-core computation of large-scale sparse pdf volumes, using a novel iterative simplification procedure of a mixture of 4D Gaussians. Finally, our data structure is optimized to facilitate interactive multi-resolution volume rendering on GPUs.
Ordering sparse matrices for cache-based systems
International Nuclear Information System (INIS)
Biswas, Rupak; Oliker, Leonid
2001-01-01
The Conjugate Gradient (CG) algorithm is the oldest and best-known Krylov subspace method used to solve sparse linear systems. Most of the coating-point operations within each CG iteration is spent performing sparse matrix-vector multiplication (SPMV). We examine how various ordering and partitioning strategies affect the performance of CG and SPMV when different programming paradigms are used on current commercial cache-based computers. However, a multithreaded implementation on the cacheless Cray MTA demonstrates high efficiency and scalability without any special ordering or partitioning
Quantifying interception associated with new urban vegetation canopies
Yerk, W.; Montalto, F. A.
2013-12-01
Interception of precipitation by vegetation canopies has long been recognized as an important component of the hydrologic cycle, though most research has been in closed or sparse canopy forests. Much less work has been published on interception by urban vegetation, and especially associated with the low growing shrubs commonly installed in green infrastructure program. To inform urban watershed model with vegetation-specific interception data, a field experiment was designed to directly measure canopy throughfall associated with two shrub species commonly included in urban greening programs. Data was collected at a high (e.g. five second) sampling frequency. A non-parametric Kruskal-Wallis test performed on data collected between August and October of 2012 demonstrated statistically significant (p= 0.0011) differences in recorded throughfall between two species (94% for Itea virginica, 86% for Cornus sericea). Additionally, the results suggested that the relationship of throughfall to rainfall intensity varied by species. For Itea, the ratio of throughfall to precipitation intensity was close to 1:1. However, for Cornus, the throughfall rate was on average slower (or 0.85 of the precipitation intensity). An improved and expanded set-up installed in 2013 added two additional species (Prunus laurocerasus and Hydrangea quercifolia). The 2013 results confirm interspecies differences in both throughfall amount, and in the relationship of throughfall rate to precipitation intensity. The results are discussed with respect to droplet splashing and enhanced evaporation within the canopy. Both years' findings suggest that the quantity of water intercepted by vegetation canopies exceeds the canopy storage capacity, as assumed in many conventional hydrologic models.
A flexible framework for sparse simultaneous component based data integration
Directory of Open Access Journals (Sweden)
Van Deun Katrijn
2011-11-01
Full Text Available Abstract 1 Background High throughput data are complex and methods that reveal structure underlying the data are most useful. Principal component analysis, frequently implemented as a singular value decomposition, is a popular technique in this respect. Nowadays often the challenge is to reveal structure in several sources of information (e.g., transcriptomics, proteomics that are available for the same biological entities under study. Simultaneous component methods are most promising in this respect. However, the interpretation of the principal and simultaneous components is often daunting because contributions of each of the biomolecules (transcripts, proteins have to be taken into account. 2 Results We propose a sparse simultaneous component method that makes many of the parameters redundant by shrinking them to zero. It includes principal component analysis, sparse principal component analysis, and ordinary simultaneous component analysis as special cases. Several penalties can be tuned that account in different ways for the block structure present in the integrated data. This yields known sparse approaches as the lasso, the ridge penalty, the elastic net, the group lasso, sparse group lasso, and elitist lasso. In addition, the algorithmic results can be easily transposed to the context of regression. Metabolomics data obtained with two measurement platforms for the same set of Escherichia coli samples are used to illustrate the proposed methodology and the properties of different penalties with respect to sparseness across and within data blocks. 3 Conclusion Sparse simultaneous component analysis is a useful method for data integration: First, simultaneous analyses of multiple blocks offer advantages over sequential and separate analyses and second, interpretation of the results is highly facilitated by their sparseness. The approach offered is flexible and allows to take the block structure in different ways into account. As such
A flexible framework for sparse simultaneous component based data integration.
Van Deun, Katrijn; Wilderjans, Tom F; van den Berg, Robert A; Antoniadis, Anestis; Van Mechelen, Iven
2011-11-15
High throughput data are complex and methods that reveal structure underlying the data are most useful. Principal component analysis, frequently implemented as a singular value decomposition, is a popular technique in this respect. Nowadays often the challenge is to reveal structure in several sources of information (e.g., transcriptomics, proteomics) that are available for the same biological entities under study. Simultaneous component methods are most promising in this respect. However, the interpretation of the principal and simultaneous components is often daunting because contributions of each of the biomolecules (transcripts, proteins) have to be taken into account. We propose a sparse simultaneous component method that makes many of the parameters redundant by shrinking them to zero. It includes principal component analysis, sparse principal component analysis, and ordinary simultaneous component analysis as special cases. Several penalties can be tuned that account in different ways for the block structure present in the integrated data. This yields known sparse approaches as the lasso, the ridge penalty, the elastic net, the group lasso, sparse group lasso, and elitist lasso. In addition, the algorithmic results can be easily transposed to the context of regression. Metabolomics data obtained with two measurement platforms for the same set of Escherichia coli samples are used to illustrate the proposed methodology and the properties of different penalties with respect to sparseness across and within data blocks. Sparse simultaneous component analysis is a useful method for data integration: First, simultaneous analyses of multiple blocks offer advantages over sequential and separate analyses and second, interpretation of the results is highly facilitated by their sparseness. The approach offered is flexible and allows to take the block structure in different ways into account. As such, structures can be found that are exclusively tied to one data platform
P-SPARSLIB: A parallel sparse iterative solution package
Energy Technology Data Exchange (ETDEWEB)
Saad, Y. [Univ. of Minnesota, Minneapolis, MN (United States)
1994-12-31
Iterative methods are gaining popularity in engineering and sciences at a time where the computational environment is changing rapidly. P-SPARSLIB is a project to build a software library for sparse matrix computations on parallel computers. The emphasis is on iterative methods and the use of distributed sparse matrices, an extension of the domain decomposition approach to general sparse matrices. One of the goals of this project is to develop a software package geared towards specific applications. For example, the author will test the performance and usefulness of P-SPARSLIB modules on linear systems arising from CFD applications. Equally important is the goal of portability. In the long run, the author wishes to ensure that this package is portable on a variety of platforms, including SIMD environments and shared memory environments.
Feature selection and multi-kernel learning for sparse representation on a manifold
Wang, Jim Jing-Yan
2014-03-01
Sparse representation has been widely studied as a part-based data representation method and applied in many scientific and engineering fields, such as bioinformatics and medical imaging. It seeks to represent a data sample as a sparse linear combination of some basic items in a dictionary. Gao etal. (2013) recently proposed Laplacian sparse coding by regularizing the sparse codes with an affinity graph. However, due to the noisy features and nonlinear distribution of the data samples, the affinity graph constructed directly from the original feature space is not necessarily a reliable reflection of the intrinsic manifold of the data samples. To overcome this problem, we integrate feature selection and multiple kernel learning into the sparse coding on the manifold. To this end, unified objectives are defined for feature selection, multiple kernel learning, sparse coding, and graph regularization. By optimizing the objective functions iteratively, we develop novel data representation algorithms with feature selection and multiple kernel learning respectively. Experimental results on two challenging tasks, N-linked glycosylation prediction and mammogram retrieval, demonstrate that the proposed algorithms outperform the traditional sparse coding methods. © 2013 Elsevier Ltd.
Feature selection and multi-kernel learning for sparse representation on a manifold.
Wang, Jim Jing-Yan; Bensmail, Halima; Gao, Xin
2014-03-01
Sparse representation has been widely studied as a part-based data representation method and applied in many scientific and engineering fields, such as bioinformatics and medical imaging. It seeks to represent a data sample as a sparse linear combination of some basic items in a dictionary. Gao et al. (2013) recently proposed Laplacian sparse coding by regularizing the sparse codes with an affinity graph. However, due to the noisy features and nonlinear distribution of the data samples, the affinity graph constructed directly from the original feature space is not necessarily a reliable reflection of the intrinsic manifold of the data samples. To overcome this problem, we integrate feature selection and multiple kernel learning into the sparse coding on the manifold. To this end, unified objectives are defined for feature selection, multiple kernel learning, sparse coding, and graph regularization. By optimizing the objective functions iteratively, we develop novel data representation algorithms with feature selection and multiple kernel learning respectively. Experimental results on two challenging tasks, N-linked glycosylation prediction and mammogram retrieval, demonstrate that the proposed algorithms outperform the traditional sparse coding methods. Copyright © 2013 Elsevier Ltd. All rights reserved.
Cheng, Hong
2015-01-01
This unique text/reference presents a comprehensive review of the state of the art in sparse representations, modeling and learning. The book examines both the theoretical foundations and details of algorithm implementation, highlighting the practical application of compressed sensing research in visual recognition and computer vision. Topics and features: provides a thorough introduction to the fundamentals of sparse representation, modeling and learning, and the application of these techniques in visual recognition; describes sparse recovery approaches, robust and efficient sparse represen
Design Patterns for Sparse-Matrix Computations on Hybrid CPU/GPU Platforms
Directory of Open Access Journals (Sweden)
Valeria Cardellini
2014-01-01
Full Text Available We apply object-oriented software design patterns to develop code for scientific software involving sparse matrices. Design patterns arise when multiple independent developments produce similar designs which converge onto a generic solution. We demonstrate how to use design patterns to implement an interface for sparse matrix computations on NVIDIA GPUs starting from PSBLAS, an existing sparse matrix library, and from existing sets of GPU kernels for sparse matrices. We also compare the throughput of the PSBLAS sparse matrix–vector multiplication on two platforms exploiting the GPU with that obtained by a CPU-only PSBLAS implementation. Our experiments exhibit encouraging results regarding the comparison between CPU and GPU executions in double precision, obtaining a speedup of up to 35.35 on NVIDIA GTX 285 with respect to AMD Athlon 7750, and up to 10.15 on NVIDIA Tesla C2050 with respect to Intel Xeon X5650.
An Efficient GPU General Sparse Matrix-Matrix Multiplication for Irregular Data
DEFF Research Database (Denmark)
Liu, Weifeng; Vinter, Brian
2014-01-01
General sparse matrix-matrix multiplication (SpGEMM) is a fundamental building block for numerous applications such as algebraic multigrid method, breadth first search and shortest path problem. Compared to other sparse BLAS routines, an efficient parallel SpGEMM algorithm has to handle extra...... irregularity from three aspects: (1) the number of the nonzero entries in the result sparse matrix is unknown in advance, (2) very expensive parallel insert operations at random positions in the result sparse matrix dominate the execution time, and (3) load balancing must account for sparse data in both input....... Load balancing builds on the number of the necessary arithmetic operations on the nonzero entries and is guaranteed in all stages. Compared with the state-of-the-art GPU SpGEMM methods in the CUSPARSE library and the CUSP library and the latest CPU SpGEMM method in the Intel Math Kernel Library, our...
Comparison of Methods for Sparse Representation of Musical Signals
DEFF Research Database (Denmark)
Endelt, Line Ørtoft; la Cour-Harbo, Anders
2005-01-01
by a number of sparseness measures and results are shown on the ℓ1 norm of the coefficients, using a dictionary containing a Dirac basis, a Discrete Cosine Transform, and a Wavelet Packet. Evaluated only on the sparseness Matching Pursuit is the best method, and it is also relatively fast....
Joint-2D-SL0 Algorithm for Joint Sparse Matrix Reconstruction
Directory of Open Access Journals (Sweden)
Dong Zhang
2017-01-01
Full Text Available Sparse matrix reconstruction has a wide application such as DOA estimation and STAP. However, its performance is usually restricted by the grid mismatch problem. In this paper, we revise the sparse matrix reconstruction model and propose the joint sparse matrix reconstruction model based on one-order Taylor expansion. And it can overcome the grid mismatch problem. Then, we put forward the Joint-2D-SL0 algorithm which can solve the joint sparse matrix reconstruction problem efficiently. Compared with the Kronecker compressive sensing method, our proposed method has a higher computational efficiency and acceptable reconstruction accuracy. Finally, simulation results validate the superiority of the proposed method.
Discussion of CoSA: Clustering of Sparse Approximations
Energy Technology Data Exchange (ETDEWEB)
Armstrong, Derek Elswick [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
2017-03-07
The purpose of this talk is to discuss the possible applications of CoSA (Clustering of Sparse Approximations) to the exploitation of HSI (HyperSpectral Imagery) data. CoSA is presented by Moody et al. in the Journal of Applied Remote Sensing (“Land cover classification in multispectral imagery using clustering of sparse approximations over learned feature dictionaries”, Vol. 8, 2014) and is based on machine learning techniques.
Energy Technology Data Exchange (ETDEWEB)
Brown, M.E. [Department of Geography, University of Maryland, NASA Goddard Space Flight Center, Code 923, Greenbelt, MD 20771 (United States); Pinzon, J.E. [Science Systems and Applications Inc., NASA Goddard Space Flight Center, Code 923, Greenbelt, MD (United States); Prince, S.D. [Department of Geography, University of Maryland, College Park, MD (United States)
2006-09-15
Systematic evaluation of food security throughout the Sahel has been attempted for nearly two decades. Food security analyses have used both food prices to determine the ability of the population to access food, and satellite-derived vegetation indices that measure vegetation production to establish how much food is available each year. The relationship between these two food security indicators is explored here using correspondence analysis and through the use of Markov chain models. Two sources of quantitative data were used: 8 km normalized difference vegetation index (NDVI) data from the Advanced Very High Resolution Radiometers (AVHRR) carried on the NOAA series of satellites, and monthly millet prices from 445 markets in Mali, Niger and Burkina Faso. The results show that the growing season vegetation production is related to the price of millet at the annual and the seasonal time scales. If the growing season was characterized by erratic, sparse rainfall, it resulted in higher prices, and well-distributed, abundant rainfall resulted in lower prices. The correspondence between vegetation production and millet prices is used to produce maps of millet prices for West Africa.
Facial Expression Recognition via Non-Negative Least-Squares Sparse Coding
Directory of Open Access Journals (Sweden)
Ying Chen
2014-05-01
Full Text Available Sparse coding is an active research subject in signal processing, computer vision, and pattern recognition. A novel method of facial expression recognition via non-negative least squares (NNLS sparse coding is presented in this paper. The NNLS sparse coding is used to form a facial expression classifier. To testify the performance of the presented method, local binary patterns (LBP and the raw pixels are extracted for facial feature representation. Facial expression recognition experiments are conducted on the Japanese Female Facial Expression (JAFFE database. Compared with other widely used methods such as linear support vector machines (SVM, sparse representation-based classifier (SRC, nearest subspace classifier (NSC, K-nearest neighbor (KNN and radial basis function neural networks (RBFNN, the experiment results indicate that the presented NNLS method performs better than other used methods on facial expression recognition tasks.
Sparse Representation Based Multi-Instance Learning for Breast Ultrasound Image Classification
Directory of Open Access Journals (Sweden)
Lu Bing
2017-01-01
Full Text Available We propose a novel method based on sparse representation for breast ultrasound image classification under the framework of multi-instance learning (MIL. After image enhancement and segmentation, concentric circle is used to extract the global and local features for improving the accuracy in diagnosis and prediction. The classification problem of ultrasound image is converted to sparse representation based MIL problem. Each instance of a bag is represented as a sparse linear combination of all basis vectors in the dictionary, and then the bag is represented by one feature vector which is obtained via sparse representations of all instances within the bag. The sparse and MIL problem is further converted to a conventional learning problem that is solved by relevance vector machine (RVM. Results of single classifiers are combined to be used for classification. Experimental results on the breast cancer datasets demonstrate the superiority of the proposed method in terms of classification accuracy as compared with state-of-the-art MIL methods.
Sparse Representation Based Multi-Instance Learning for Breast Ultrasound Image Classification.
Bing, Lu; Wang, Wei
2017-01-01
We propose a novel method based on sparse representation for breast ultrasound image classification under the framework of multi-instance learning (MIL). After image enhancement and segmentation, concentric circle is used to extract the global and local features for improving the accuracy in diagnosis and prediction. The classification problem of ultrasound image is converted to sparse representation based MIL problem. Each instance of a bag is represented as a sparse linear combination of all basis vectors in the dictionary, and then the bag is represented by one feature vector which is obtained via sparse representations of all instances within the bag. The sparse and MIL problem is further converted to a conventional learning problem that is solved by relevance vector machine (RVM). Results of single classifiers are combined to be used for classification. Experimental results on the breast cancer datasets demonstrate the superiority of the proposed method in terms of classification accuracy as compared with state-of-the-art MIL methods.
Joint sparse representation for robust multimodal biometrics recognition.
Shekhar, Sumit; Patel, Vishal M; Nasrabadi, Nasser M; Chellappa, Rama
2014-01-01
Traditional biometric recognition systems rely on a single biometric signature for authentication. While the advantage of using multiple sources of information for establishing the identity has been widely recognized, computational models for multimodal biometrics recognition have only recently received attention. We propose a multimodal sparse representation method, which represents the test data by a sparse linear combination of training data, while constraining the observations from different modalities of the test subject to share their sparse representations. Thus, we simultaneously take into account correlations as well as coupling information among biometric modalities. A multimodal quality measure is also proposed to weigh each modality as it gets fused. Furthermore, we also kernelize the algorithm to handle nonlinearity in data. The optimization problem is solved using an efficient alternative direction method. Various experiments show that the proposed method compares favorably with competing fusion-based methods.
Robust Visual Tracking Via Consistent Low-Rank Sparse Learning
Zhang, Tianzhu
2014-06-19
Object tracking is the process of determining the states of a target in consecutive video frames based on properties of motion and appearance consistency. In this paper, we propose a consistent low-rank sparse tracker (CLRST) that builds upon the particle filter framework for tracking. By exploiting temporal consistency, the proposed CLRST algorithm adaptively prunes and selects candidate particles. By using linear sparse combinations of dictionary templates, the proposed method learns the sparse representations of image regions corresponding to candidate particles jointly by exploiting the underlying low-rank constraints. In addition, the proposed CLRST algorithm is computationally attractive since temporal consistency property helps prune particles and the low-rank minimization problem for learning joint sparse representations can be efficiently solved by a sequence of closed form update operations. We evaluate the proposed CLRST algorithm against 14 state-of-the-art tracking methods on a set of 25 challenging image sequences. Experimental results show that the CLRST algorithm performs favorably against state-of-the-art tracking methods in terms of accuracy and execution time.
Efficient collaborative sparse channel estimation in massive MIMO
Masood, Mudassir
2015-08-12
We propose a method for estimation of sparse frequency selective channels within MIMO-OFDM systems. These channels are independently sparse and share a common support. The method estimates the impulse response for each channel observed by the antennas at the receiver. Estimation is performed in a coordinated manner by sharing minimal information among neighboring antennas to achieve results better than many contemporary methods. Simulations demonstrate the superior performance of the proposed method.
Efficient collaborative sparse channel estimation in massive MIMO
Masood, Mudassir; Afify, Laila H.; Al-Naffouri, Tareq Y.
2015-01-01
We propose a method for estimation of sparse frequency selective channels within MIMO-OFDM systems. These channels are independently sparse and share a common support. The method estimates the impulse response for each channel observed by the antennas at the receiver. Estimation is performed in a coordinated manner by sharing minimal information among neighboring antennas to achieve results better than many contemporary methods. Simulations demonstrate the superior performance of the proposed method.
Sparse dictionary learning of resting state fMRI networks.
Eavani, Harini; Filipovych, Roman; Davatzikos, Christos; Satterthwaite, Theodore D; Gur, Raquel E; Gur, Ruben C
2012-07-02
Research in resting state fMRI (rsfMRI) has revealed the presence of stable, anti-correlated functional subnetworks in the brain. Task-positive networks are active during a cognitive process and are anti-correlated with task-negative networks, which are active during rest. In this paper, based on the assumption that the structure of the resting state functional brain connectivity is sparse, we utilize sparse dictionary modeling to identify distinct functional sub-networks. We propose two ways of formulating the sparse functional network learning problem that characterize the underlying functional connectivity from different perspectives. Our results show that the whole-brain functional connectivity can be concisely represented with highly modular, overlapping task-positive/negative pairs of sub-networks.
Low-Rank Sparse Coding for Image Classification
Zhang, Tianzhu; Ghanem, Bernard; Liu, Si; Xu, Changsheng; Ahuja, Narendra
2013-01-01
In this paper, we propose a low-rank sparse coding (LRSC) method that exploits local structure information among features in an image for the purpose of image-level classification. LRSC represents densely sampled SIFT descriptors, in a spatial neighborhood, collectively as low-rank, sparse linear combinations of code words. As such, it casts the feature coding problem as a low-rank matrix learning problem, which is different from previous methods that encode features independently. This LRSC has a number of attractive properties. (1) It encourages sparsity in feature codes, locality in codebook construction, and low-rankness for spatial consistency. (2) LRSC encodes local features jointly by considering their low-rank structure information, and is computationally attractive. We evaluate the LRSC by comparing its performance on a set of challenging benchmarks with that of 7 popular coding and other state-of-the-art methods. Our experiments show that by representing local features jointly, LRSC not only outperforms the state-of-the-art in classification accuracy but also improves the time complexity of methods that use a similar sparse linear representation model for feature coding.
Low-Rank Sparse Coding for Image Classification
Zhang, Tianzhu
2013-12-01
In this paper, we propose a low-rank sparse coding (LRSC) method that exploits local structure information among features in an image for the purpose of image-level classification. LRSC represents densely sampled SIFT descriptors, in a spatial neighborhood, collectively as low-rank, sparse linear combinations of code words. As such, it casts the feature coding problem as a low-rank matrix learning problem, which is different from previous methods that encode features independently. This LRSC has a number of attractive properties. (1) It encourages sparsity in feature codes, locality in codebook construction, and low-rankness for spatial consistency. (2) LRSC encodes local features jointly by considering their low-rank structure information, and is computationally attractive. We evaluate the LRSC by comparing its performance on a set of challenging benchmarks with that of 7 popular coding and other state-of-the-art methods. Our experiments show that by representing local features jointly, LRSC not only outperforms the state-of-the-art in classification accuracy but also improves the time complexity of methods that use a similar sparse linear representation model for feature coding.
DEFF Research Database (Denmark)
Han, Xixuan; Clemmensen, Line Katrine Harder
2015-01-01
We propose a general technique for obtaining sparse solutions to generalized eigenvalue problems, and call it Regularized Generalized Eigen-Decomposition (RGED). For decades, Fisher's discriminant criterion has been applied in supervised feature extraction and discriminant analysis, and it is for...
A performance study of sparse Cholesky factorization on INTEL iPSC/860
Zubair, M.; Ghose, M.
1992-01-01
The problem of Cholesky factorization of a sparse matrix has been very well investigated on sequential machines. A number of efficient codes exist for factorizing large unstructured sparse matrices. However, there is a lack of such efficient codes on parallel machines in general, and distributed machines in particular. Some of the issues that are critical to the implementation of sparse Cholesky factorization on a distributed memory parallel machine are ordering, partitioning and mapping, load balancing, and ordering of various tasks within a processor. Here, we focus on the effect of various partitioning schemes on the performance of sparse Cholesky factorization on the Intel iPSC/860. Also, a new partitioning heuristic for structured as well as unstructured sparse matrices is proposed, and its performance is compared with other schemes.
Fast sparsely synchronized brain rhythms in a scale-free neural network.
Kim, Sang-Yoon; Lim, Woochang
2015-08-01
We consider a directed version of the Barabási-Albert scale-free network model with symmetric preferential attachment with the same in- and out-degrees and study the emergence of sparsely synchronized rhythms for a fixed attachment degree in an inhibitory population of fast-spiking Izhikevich interneurons. Fast sparsely synchronized rhythms with stochastic and intermittent neuronal discharges are found to appear for large values of J (synaptic inhibition strength) and D (noise intensity). For an intensive study we fix J at a sufficiently large value and investigate the population states by increasing D. For small D, full synchronization with the same population-rhythm frequency fp and mean firing rate (MFR) fi of individual neurons occurs, while for large D partial synchronization with fp>〈fi〉 (〈fi〉: ensemble-averaged MFR) appears due to intermittent discharge of individual neurons; in particular, the case of fp>4〈fi〉 is referred to as sparse synchronization. For the case of partial and sparse synchronization, MFRs of individual neurons vary depending on their degrees. As D passes a critical value D* (which is determined by employing an order parameter), a transition to unsynchronization occurs due to the destructive role of noise to spoil the pacing between sparse spikes. For D
Fast sparsely synchronized brain rhythms in a scale-free neural network
Kim, Sang-Yoon; Lim, Woochang
2015-08-01
We consider a directed version of the Barabási-Albert scale-free network model with symmetric preferential attachment with the same in- and out-degrees and study the emergence of sparsely synchronized rhythms for a fixed attachment degree in an inhibitory population of fast-spiking Izhikevich interneurons. Fast sparsely synchronized rhythms with stochastic and intermittent neuronal discharges are found to appear for large values of J (synaptic inhibition strength) and D (noise intensity). For an intensive study we fix J at a sufficiently large value and investigate the population states by increasing D . For small D , full synchronization with the same population-rhythm frequency fp and mean firing rate (MFR) fi of individual neurons occurs, while for large D partial synchronization with fp> ( : ensemble-averaged MFR) appears due to intermittent discharge of individual neurons; in particular, the case of fp>4 is referred to as sparse synchronization. For the case of partial and sparse synchronization, MFRs of individual neurons vary depending on their degrees. As D passes a critical value D* (which is determined by employing an order parameter), a transition to unsynchronization occurs due to the destructive role of noise to spoil the pacing between sparse spikes. For D
l1- and l2-Norm Joint Regularization Based Sparse Signal Reconstruction Scheme
Directory of Open Access Journals (Sweden)
Chanzi Liu
2016-01-01
Full Text Available Many problems in signal processing and statistical inference involve finding sparse solution to some underdetermined linear system of equations. This is also the application condition of compressive sensing (CS which can find the sparse solution from the measurements far less than the original signal. In this paper, we propose l1- and l2-norm joint regularization based reconstruction framework to approach the original l0-norm based sparseness-inducing constrained sparse signal reconstruction problem. Firstly, it is shown that, by employing the simple conjugate gradient algorithm, the new formulation provides an effective framework to deduce the solution as the original sparse signal reconstruction problem with l0-norm regularization item. Secondly, the upper reconstruction error limit is presented for the proposed sparse signal reconstruction framework, and it is unveiled that a smaller reconstruction error than l1-norm relaxation approaches can be realized by using the proposed scheme in most cases. Finally, simulation results are presented to validate the proposed sparse signal reconstruction approach.
Image fusion via nonlocal sparse K-SVD dictionary learning.
Li, Ying; Li, Fangyi; Bai, Bendu; Shen, Qiang
2016-03-01
Image fusion aims to merge two or more images captured via various sensors of the same scene to construct a more informative image by integrating their details. Generally, such integration is achieved through the manipulation of the representations of the images concerned. Sparse representation plays an important role in the effective description of images, offering a great potential in a variety of image processing tasks, including image fusion. Supported by sparse representation, in this paper, an approach for image fusion by the use of a novel dictionary learning scheme is proposed. The nonlocal self-similarity property of the images is exploited, not only at the stage of learning the underlying description dictionary but during the process of image fusion. In particular, the property of nonlocal self-similarity is combined with the traditional sparse dictionary. This results in an improved learned dictionary, hereafter referred to as the nonlocal sparse K-SVD dictionary (where K-SVD stands for the K times singular value decomposition that is commonly used in the literature), and abbreviated to NL_SK_SVD. The performance of the NL_SK_SVD dictionary is applied for image fusion using simultaneous orthogonal matching pursuit. The proposed approach is evaluated with different types of images, and compared with a number of alternative image fusion techniques. The resultant superior fused images using the present approach demonstrates the efficacy of the NL_SK_SVD dictionary in sparse image representation.
Directory of Open Access Journals (Sweden)
Atsushi Tamura
2017-01-01
Full Text Available Background Forest management strategies such as thinning have long been used to enhance ecosystem functions, especially in plantations. Thinning in plantations with high deer density, however, may not yield a desired increase in understory vegetation because deer graze on germinating plants after thinning. Here, we examine the changes in understory vegetation after thinning in plantations that have been overgrazed by sika deer to provide insight into the effects of thinning on ecosystem functions such as soil conservation and biological diversity. Methods We conducted our survey in the Tanzawa Mountains of eastern Japan. We surveyed the change in understory vegetation within and outside of three deer exclosures on a single slope with three levels of understory vegetation cover: sparse (1%, exclosure “US”, moderate (30%, exclosure “MM”, and dense (80%, exclosure “LD” over 10 years after a 30% thinning of an old-growth cedar and cypress plantation which was overgrazed by sika deer. Results Understory vegetation cover, biomass and species richness increased within and outside the “US” and “MM” exclosures after thinning, and biomass was greater within than outside the exclosures at 10 years after thinning. Unpalatable species dominated both “US” and “MM” exclosures before thinning, and trees and shrubs dominated within the exclosures over time after thinning. In contrast, unpalatable, grazing-tolerant, perennial, and annual species increased outside the “US” and “MM” exclosures. No noticeable changes were observed within and outside the “LD” exclosure when compared with the “US” and “MM” exclosures. Conclusions Our results suggest that thinning a stand by 30% based on volume resulted in an increase in understory vegetation cover mainly composed of both unpalatable and grazing-tolerant species in a plantation forest where understory vegetation is sparse or moderate and sika deer density is high. We
Detection of Pitting in Gears Using a Deep Sparse Autoencoder
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Yongzhi Qu
2017-05-01
Full Text Available In this paper; a new method for gear pitting fault detection is presented. The presented method is developed based on a deep sparse autoencoder. The method integrates dictionary learning in sparse coding into a stacked autoencoder network. Sparse coding with dictionary learning is viewed as an adaptive feature extraction method for machinery fault diagnosis. An autoencoder is an unsupervised machine learning technique. A stacked autoencoder network with multiple hidden layers is considered to be a deep learning network. The presented method uses a stacked autoencoder network to perform the dictionary learning in sparse coding and extract features from raw vibration data automatically. These features are then used to perform gear pitting fault detection. The presented method is validated with vibration data collected from gear tests with pitting faults in a gearbox test rig and compared with an existing deep learning-based approach.
Wright, K. A.; Hiatt, M. R.; Passalacqua, P.
2017-12-01
The humanitarian and ecological importance of coastal deltas has led many to research the factors influencing their ecogeomorphic evolution, in hopes of predicting the response of these regions to the growing number of natural and anthropogenic threats they face. One area of this effort, in which many unresolved questions remain, concerns the hydrological connectivity between the distributary channels and interdistributary islands, which field observations and numerical modeling have shown to be significant. Island vegetation is known to affect the degree of connectivity, but the effect of the spatial distribution of vegetation on connectivity remains an important question. This research aims to determine to what extent vegetation percent cover, patch size, and plant density affect connectivity in an idealized deltaic system. A 2D hydrodynamic model was used to numerically solve the shallow water equations in an idealized channel-island complex, modeled after Wax Lake Delta in Louisiana. For each model run, vegetation patches were distributed randomly throughout the islands according to a specified percent cover and patch size. Vegetation was modeled as a modified bed roughness, which was varied to represent a range of sparse-to-dense vegetation. To determine the effect of heterogeneity, the results of each patchy scenario were compared to results from a uniform run with the same spatially-averaged roughness. It was found that, while all patchy model runs demonstrated more channel-island connectivity than comparable uniform runs, this was particularly true when vegetation patches were dense and covered distributions in the deltaic islands, which can have implications for the fate and transport of sediment/nutrients. These results indicate that the spatial distribution of vegetation can have a notable impact on our ability to model connectivity in deltaic systems.
In-Storage Embedded Accelerator for Sparse Pattern Processing
Jun, Sang-Woo; Nguyen, Huy T.; Gadepally, Vijay N.; Arvind
2016-01-01
We present a novel architecture for sparse pattern processing, using flash storage with embedded accelerators. Sparse pattern processing on large data sets is the essence of applications such as document search, natural language processing, bioinformatics, subgraph matching, machine learning, and graph processing. One slice of our prototype accelerator is capable of handling up to 1TB of data, and experiments show that it can outperform C/C++ software solutions on a 16-core system at a fracti...
Process Knowledge Discovery Using Sparse Principal Component Analysis
DEFF Research Database (Denmark)
Gao, Huihui; Gajjar, Shriram; Kulahci, Murat
2016-01-01
As the goals of ensuring process safety and energy efficiency become ever more challenging, engineers increasingly rely on data collected from such processes for informed decision making. During recent decades, extracting and interpreting valuable process information from large historical data sets...... SPCA approach that helps uncover the underlying process knowledge regarding variable relations. This approach systematically determines the optimal sparse loadings for each sparse PC while improving interpretability and minimizing information loss. The salient features of the proposed approach...
Massively parallel sparse matrix function calculations with NTPoly
Dawson, William; Nakajima, Takahito
2018-04-01
We present NTPoly, a massively parallel library for computing the functions of sparse, symmetric matrices. The theory of matrix functions is a well developed framework with a wide range of applications including differential equations, graph theory, and electronic structure calculations. One particularly important application area is diagonalization free methods in quantum chemistry. When the input and output of the matrix function are sparse, methods based on polynomial expansions can be used to compute matrix functions in linear time. We present a library based on these methods that can compute a variety of matrix functions. Distributed memory parallelization is based on a communication avoiding sparse matrix multiplication algorithm. OpenMP task parallellization is utilized to implement hybrid parallelization. We describe NTPoly's interface and show how it can be integrated with programs written in many different programming languages. We demonstrate the merits of NTPoly by performing large scale calculations on the K computer.
Deformable segmentation via sparse representation and dictionary learning.
Zhang, Shaoting; Zhan, Yiqiang; Metaxas, Dimitris N
2012-10-01
"Shape" and "appearance", the two pillars of a deformable model, complement each other in object segmentation. In many medical imaging applications, while the low-level appearance information is weak or mis-leading, shape priors play a more important role to guide a correct segmentation, thanks to the strong shape characteristics of biological structures. Recently a novel shape prior modeling method has been proposed based on sparse learning theory. Instead of learning a generative shape model, shape priors are incorporated on-the-fly through the sparse shape composition (SSC). SSC is robust to non-Gaussian errors and still preserves individual shape characteristics even when such characteristics is not statistically significant. Although it seems straightforward to incorporate SSC into a deformable segmentation framework as shape priors, the large-scale sparse optimization of SSC has low runtime efficiency, which cannot satisfy clinical requirements. In this paper, we design two strategies to decrease the computational complexity of SSC, making a robust, accurate and efficient deformable segmentation system. (1) When the shape repository contains a large number of instances, which is often the case in 2D problems, K-SVD is used to learn a more compact but still informative shape dictionary. (2) If the derived shape instance has a large number of vertices, which often appears in 3D problems, an affinity propagation method is used to partition the surface into small sub-regions, on which the sparse shape composition is performed locally. Both strategies dramatically decrease the scale of the sparse optimization problem and hence speed up the algorithm. Our method is applied on a diverse set of biomedical image analysis problems. Compared to the original SSC, these two newly-proposed modules not only significant reduce the computational complexity, but also improve the overall accuracy. Copyright © 2012 Elsevier B.V. All rights reserved.
Sparseness- and continuity-constrained seismic imaging
Herrmann, Felix J.
2005-04-01
Non-linear solution strategies to the least-squares seismic inverse-scattering problem with sparseness and continuity constraints are proposed. Our approach is designed to (i) deal with substantial amounts of additive noise (SNR formulating the solution of the seismic inverse problem in terms of an optimization problem. During the optimization, sparseness on the basis and continuity along the reflectors are imposed by jointly minimizing the l1- and anisotropic diffusion/total-variation norms on the coefficients and reflectivity, respectively. [Joint work with Peyman P. Moghaddam was carried out as part of the SINBAD project, with financial support secured through ITF (the Industry Technology Facilitator) from the following organizations: BG Group, BP, ExxonMobil, and SHELL. Additional funding came from the NSERC Discovery Grants 22R81254.
Combinatorial Algorithms for Computing Column Space Bases ThatHave Sparse Inverses
Energy Technology Data Exchange (ETDEWEB)
Pinar, Ali; Chow, Edmond; Pothen, Alex
2005-03-18
This paper presents a combinatorial study on the problem ofconstructing a sparse basis forthe null-space of a sparse, underdetermined, full rank matrix, A. Such a null-space is suitable forsolving solving many saddle point problems. Our approach is to form acolumn space basis of A that has a sparse inverse, by selecting suitablecolumns of A. This basis is then used to form a sparse null-space basisin fundamental form. We investigate three different algorithms forcomputing the column space basis: Two greedy approaches that rely onmatching, and a third employing a divide and conquer strategy implementedwith hypergraph partitioning followed by the greedy approach. We alsodiscuss the complexity of selecting a column basis when it is known thata block diagonal basis exists with a small given block size.
Image Super-Resolution Algorithm Based on an Improved Sparse Autoencoder
Directory of Open Access Journals (Sweden)
Detian Huang
2018-01-01
Full Text Available Due to the limitations of the resolution of the imaging system and the influence of scene changes and other factors, sometimes only low-resolution images can be acquired, which cannot satisfy the practical application’s requirements. To improve the quality of low-resolution images, a novel super-resolution algorithm based on an improved sparse autoencoder is proposed. Firstly, in the training set preprocessing stage, the high- and low-resolution image training sets are constructed, respectively, by using high-frequency information of the training samples as the characterization, and then the zero-phase component analysis whitening technique is utilized to decorrelate the formed joint training set to reduce its redundancy. Secondly, a constructed sparse regularization term is added to the cost function of the traditional sparse autoencoder to further strengthen the sparseness constraint on the hidden layer. Finally, in the dictionary learning stage, the improved sparse autoencoder is adopted to achieve unsupervised dictionary learning to improve the accuracy and stability of the dictionary. Experimental results validate that the proposed algorithm outperforms the existing algorithms both in terms of the subjective visual perception and the objective evaluation indices, including the peak signal-to-noise ratio and the structural similarity measure.
Diagnosis and prognosis of Ostheoarthritis by texture analysis using sparse linear models
DEFF Research Database (Denmark)
Marques, Joselene; Clemmensen, Line Katrine Harder; Dam, Erik
We present a texture analysis methodology that combines uncommitted machine-learning techniques and sparse feature transformation methods in a fully automatic framework. We compare the performances of a partial least squares (PLS) forward feature selection strategy to a hard threshold sparse PLS...... algorithm and a sparse linear discriminant model. The texture analysis framework was applied to diagnosis of knee osteoarthritis (OA) and prognosis of cartilage loss. For this investigation, a generic texture feature bank was extracted from magnetic resonance images of tibial knee bone. The features were...... used as input to the sparse algorithms, which dened the best features to retain in the model. To cope with the limited number of samples, the data was evaluated using 10 fold cross validation (CV). The diagnosis evaluation using sparse PLS reached a generalization area-under-the-ROC curve (AUC) of 0...
Efficient implementations of block sparse matrix operations on shared memory vector machines
International Nuclear Information System (INIS)
Washio, T.; Maruyama, K.; Osoda, T.; Doi, S.; Shimizu, F.
2000-01-01
In this paper, we propose vectorization and shared memory-parallelization techniques for block-type random sparse matrix operations in finite element (FEM) applications. Here, a block corresponds to unknowns on one node in the FEM mesh and we assume that the block size is constant over the mesh. First, we discuss some basic vectorization ideas (the jagged diagonal (JAD) format and the segmented scan algorithm) for the sparse matrix-vector product. Then, we extend these ideas to the shared memory parallelization. After that, we show that the techniques can be applied not only to the sparse matrix-vector product but also to the sparse matrix-matrix product, the incomplete or complete sparse LU factorization and preconditioning. Finally, we report the performance evaluation results obtained on an NEC SX-4 shared memory vector machine for linear systems in some FEM applications. (author)
Energy Technology Data Exchange (ETDEWEB)
Tan, Kemin [Center for Structural Genomics of Infectious Diseases, University of Chicago, 5735 South Ellis Avenue Chicago Illinois 60637; Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Structural Biology Center, Biosciences, Argonne National Laboratory, Argonne Illinois 60439; Deatherage Kaiser, Brooke L. [National Security Directorate, Pacific Northwest National Laboratory, Richland Washington 99352; Wu, Ruiying [Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Cuff, Marianne [Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Fan, Yao [Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Bigelow, Lance [Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Jedrzejczak, Robert P. [Center for Structural Genomics of Infectious Diseases, University of Chicago, 5735 South Ellis Avenue Chicago Illinois 60637; Adkins, Joshua N. [Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland Washington 99352; Cort, John R. [Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland Washington 99352; Babnigg, Gyorgy [Center for Structural Genomics of Infectious Diseases, University of Chicago, 5735 South Ellis Avenue Chicago Illinois 60637; Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Joachimiak, Andrzej [Center for Structural Genomics of Infectious Diseases, University of Chicago, 5735 South Ellis Avenue Chicago Illinois 60637; Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Structural Biology Center, Biosciences, Argonne National Laboratory, Argonne Illinois 60439
2017-06-19
S. Typhimurium can induce both humoral and cell-mediated responses when establishing itself in the host. These responses are primarily stimulated against the lipopolysaccharide and major outer membrane (OM) proteins. OmpA is one of these major OM proteins. It comprises a N-terminal eight-stranded b-barrel trans membrane domain and a C-terminal domain (OmpACTD). The OmpACTD and its homologs are believed to bind to peptidoglycan (PG) within the periplasm, maintaining bacterial osmotic homeostasis and modulating the permeability and integrity of the OM. Here we present the first crystal structures of the OmpACTD from two pathogens: S. Typhimurium (STOmpACTD) in open and closed forms and causative agent of Lyme Disease Borrelia burgdorferi (BbOmpACTD), in closed form. In the open form of STOmpACTD, an aspartic acid residue from a long b2-a3 loop points into the binding pocket, suggesting that an anion group such as a carboxylate group from PG is favored at the binding site. In the closed form of STOmpACTD and in the structure of BbOmpACTD, a sulfate group from the crystallization buffer is tightly bound at the binding site. The differences between the closed and open forms of STOmpACTD, suggest a large conformational change that includes an extension of a3 helix by ordering a part of b2-a3 loop. We propose that the sulfate anion observed in these structures mimics the carboxylate group of PG when bound to STOmpACTD suggesting PG-anchoring mechanism. In addition, the binding of PG or a ligand mimic may enhance dimerization of STOmpACTD, or possibly that of full length STOmpA.
Energy Technology Data Exchange (ETDEWEB)
Tan, Kemin [Center for Structural Genomics of Infectious Diseases, University of Chicago, 5735 South Ellis Avenue Chicago Illinois 60637; Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Structural Biology Center, Biosciences, Argonne National Laboratory, Argonne Illinois 60439; Deatherage Kaiser, Brooke L. [National Security Directorate, Pacific Northwest National Laboratory, Richland Washington 99352; Wu, Ruiying [Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Cuff, Marianne [Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Fan, Yao [Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Bigelow, Lance [Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Jedrzejczak, Robert P. [Center for Structural Genomics of Infectious Diseases, University of Chicago, 5735 South Ellis Avenue Chicago Illinois 60637; Adkins, Joshua N. [Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland Washington 99352; Cort, John R. [Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland Washington 99352; Babnigg, Gyorgy [Center for Structural Genomics of Infectious Diseases, University of Chicago, 5735 South Ellis Avenue Chicago Illinois 60637; Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Joachimiak, Andrzej [Center for Structural Genomics of Infectious Diseases, University of Chicago, 5735 South Ellis Avenue Chicago Illinois 60637; Midwest Center for Structural Genomics, Argonne National Laboratory, Argonne Illinois 60439; Structural Biology Center, Biosciences, Argonne National Laboratory, Argonne Illinois 60439
2017-06-19
S. Typhimurium can induce both humoral and cell-mediated responses when establishing itself in the host. These responses are primarily stimulated against the lipopolysaccharide and major outer membrane (OM) proteins of the bacterium. OmpA is one of these major OM proteins. It comprises a N-terminal eight-stranded -barrel membrane domain and a C-terminal so-called OmpA C-terminal domain (OmpACTD). The OmpACTD and its homologs are believed to bind to peptidoglycan (PG) within the periplasm, maintaining bacterial osmotic homeostasis and modulating the permeability and integrity of the outer membrane. Here we present the structures of two forms of the OmpACTD of S. Typhimurium (STOmpACTD) and one structure of the less-studied OmpACTD of Borrelia burgdorferi (BbOmpACTD). In the open form of STOmpACTD, an aspartic acid residue from a long 2-3 loop points into the binding pocket, suggesting that an anion group such as a carboxylate group from PG is favored at the binding site. In the closed form of STOmpACTD and in the structure of BbOmpACTD, a sulfate group from the crystallization buffer is tightly bound at the equivalent site. The differences between the closed and open forms of STOmpACTD, suggest a large conformational change that includes an extension of 3 helix by ordering a part of 2-3 loop. We suggest that the sulfate anion observed in these structures mimics the carboxylate group of PG when bound to STOmpACTD. In addition, the binding of PG or a ligand mimic may enhance dimerization of STOmpACTD, or possibly that of full length STOmpA.
A Projected Conjugate Gradient Method for Sparse Minimax Problems
DEFF Research Database (Denmark)
Madsen, Kaj; Jonasson, Kristjan
1993-01-01
A new method for nonlinear minimax problems is presented. The method is of the trust region type and based on sequential linear programming. It is a first order method that only uses first derivatives and does not approximate Hessians. The new method is well suited for large sparse problems...... as it only requires that software for sparse linear programming and a sparse symmetric positive definite equation solver are available. On each iteration a special linear/quadratic model of the function is minimized, but contrary to the usual practice in trust region methods the quadratic model is only...... with the method are presented. In fact, we find that the number of iterations required is comparable to that of state-of-the-art quasi-Newton codes....
Identification of MIMO systems with sparse transfer function coefficients
Qiu, Wanzhi; Saleem, Syed Khusro; Skafidas, Efstratios
2012-12-01
We study the problem of estimating transfer functions of multivariable (multiple-input multiple-output--MIMO) systems with sparse coefficients. We note that subspace identification methods are powerful and convenient tools in dealing with MIMO systems since they neither require nonlinear optimization nor impose any canonical form on the systems. However, subspace-based methods are inefficient for systems with sparse transfer function coefficients since they work on state space models. We propose a two-step algorithm where the first step identifies the system order using the subspace principle in a state space format, while the second step estimates coefficients of the transfer functions via L1-norm convex optimization. The proposed algorithm retains good features of subspace methods with improved noise-robustness for sparse systems.
MULTISCALE SPARSE APPEARANCE MODELING AND SIMULATION OF PATHOLOGICAL DEFORMATIONS
Directory of Open Access Journals (Sweden)
Rami Zewail
2017-08-01
Full Text Available Machine learning and statistical modeling techniques has drawn much interest within the medical imaging research community. However, clinically-relevant modeling of anatomical structures continues to be a challenging task. This paper presents a novel method for multiscale sparse appearance modeling in medical images with application to simulation of pathological deformations in X-ray images of human spine. The proposed appearance model benefits from the non-linear approximation power of Contourlets and its ability to capture higher order singularities to achieve a sparse representation while preserving the accuracy of the statistical model. Independent Component Analysis is used to extract statistical independent modes of variations from the sparse Contourlet-based domain. The new model is then used to simulate clinically-relevant pathological deformations in radiographic images.
An Adaptive Sparse Grid Algorithm for Elliptic PDEs with Lognormal Diffusion Coefficient
Nobile, Fabio
2016-03-18
In this work we build on the classical adaptive sparse grid algorithm (T. Gerstner and M. Griebel, Dimension-adaptive tensor-product quadrature), obtaining an enhanced version capable of using non-nested collocation points, and supporting quadrature and interpolation on unbounded sets. We also consider several profit indicators that are suitable to drive the adaptation process. We then use such algorithm to solve an important test case in Uncertainty Quantification problem, namely the Darcy equation with lognormal permeability random field, and compare the results with those obtained with the quasi-optimal sparse grids based on profit estimates, which we have proposed in our previous works (cf. e.g. Convergence of quasi-optimal sparse grids approximation of Hilbert-valued functions: application to random elliptic PDEs). To treat the case of rough permeability fields, in which a sparse grid approach may not be suitable, we propose to use the adaptive sparse grid quadrature as a control variate in a Monte Carlo simulation. Numerical results show that the adaptive sparse grids have performances similar to those of the quasi-optimal sparse grids and are very effective in the case of smooth permeability fields. Moreover, their use as control variate in a Monte Carlo simulation allows to tackle efficiently also problems with rough coefficients, significantly improving the performances of a standard Monte Carlo scheme.
Sparse principal component analysis in medical shape modeling
Sjöstrand, Karl; Stegmann, Mikkel B.; Larsen, Rasmus
2006-03-01
Principal component analysis (PCA) is a widely used tool in medical image analysis for data reduction, model building, and data understanding and exploration. While PCA is a holistic approach where each new variable is a linear combination of all original variables, sparse PCA (SPCA) aims at producing easily interpreted models through sparse loadings, i.e. each new variable is a linear combination of a subset of the original variables. One of the aims of using SPCA is the possible separation of the results into isolated and easily identifiable effects. This article introduces SPCA for shape analysis in medicine. Results for three different data sets are given in relation to standard PCA and sparse PCA by simple thresholding of small loadings. Focus is on a recent algorithm for computing sparse principal components, but a review of other approaches is supplied as well. The SPCA algorithm has been implemented using Matlab and is available for download. The general behavior of the algorithm is investigated, and strengths and weaknesses are discussed. The original report on the SPCA algorithm argues that the ordering of modes is not an issue. We disagree on this point and propose several approaches to establish sensible orderings. A method that orders modes by decreasing variance and maximizes the sum of variances for all modes is presented and investigated in detail.
El-Vilaly, Mohamed Abd Salam; Didan, Kamel; Marsh, Stuart E.; van Leeuwen, Willem J. D.; Crimmins, Michael A.; Munoz, Armando Barreto
2018-03-01
For more than a decade, the Four Corners Region has faced extensive and persistent drought conditions that have impacted vegetation communities and local water resources while exacerbating soil erosion. These persistent droughts threaten ecosystem services, agriculture, and livestock activities, and expose the hypersensitivity of this region to inter-annual climate variability and change. Much of the intermountainWestern United States has sparse climate and vegetation monitoring stations, making fine-scale drought assessments difficult. Remote sensing data offers the opportunity to assess the impacts of the recent droughts on vegetation productivity across these areas. Here, we propose a drought assessment approach that integrates climate and topographical data with remote sensing vegetation index time series. Multisensor Normalized Difference Vegetation Index (NDVI) time series data from 1989 to 2010 at 5.6 km were analyzed to characterize the vegetation productivity changes and responses to the ongoing drought. A multi-linear regression was applied to metrics of vegetation productivity derived from the NDVI time series to detect vegetation productivity, an ecosystem service proxy, and changes. The results show that around 60.13% of the study area is observing a general decline of greenness ( pchallenges to the region's already stressed ecosystems. Whereas the results provide additional insights into this isolated and vulnerable region, the drought assessment approach used in this study may be adapted for application in other regions where surface-based climate and vegetation monitoring record is spatially and temporally limited.
Directory of Open Access Journals (Sweden)
Alan Marsh
2014-06-01
Full Text Available Restrictions in technology have limited past habitat selection studies for many species to the home-range level, as a finer-scale understanding was often not possible. Consequently, these studies may not identify the true mechanism driving habitat selection patterns, which may influence how such results are applied in conservation. We used GPS dataloggers with digital video recorders to identify foraging modes and locations in which endangered Burrowing Owls (Athene cunicularia captured prey. We measured the coarse and fine-scale characteristics of vegetation at locations in which owls searched for, versus where they caught, vertebrate prey. Most prey items were caught using hover-hunting. Burrowing Owls searched for, and caught, vertebrate prey in all cover types, but were more likely to kill prey in areas with sparse and less dense vegetative cover. Management strategies designed to increase Burrowing Owl foraging success in the Canadian prairies should try to ensure a mosaic of vegetation heights across cover types.
Inference algorithms and learning theory for Bayesian sparse factor analysis
International Nuclear Information System (INIS)
Rattray, Magnus; Sharp, Kevin; Stegle, Oliver; Winn, John
2009-01-01
Bayesian sparse factor analysis has many applications; for example, it has been applied to the problem of inferring a sparse regulatory network from gene expression data. We describe a number of inference algorithms for Bayesian sparse factor analysis using a slab and spike mixture prior. These include well-established Markov chain Monte Carlo (MCMC) and variational Bayes (VB) algorithms as well as a novel hybrid of VB and Expectation Propagation (EP). For the case of a single latent factor we derive a theory for learning performance using the replica method. We compare the MCMC and VB/EP algorithm results with simulated data to the theoretical prediction. The results for MCMC agree closely with the theory as expected. Results for VB/EP are slightly sub-optimal but show that the new algorithm is effective for sparse inference. In large-scale problems MCMC is infeasible due to computational limitations and the VB/EP algorithm then provides a very useful computationally efficient alternative.
Inference algorithms and learning theory for Bayesian sparse factor analysis
Energy Technology Data Exchange (ETDEWEB)
Rattray, Magnus; Sharp, Kevin [School of Computer Science, University of Manchester, Manchester M13 9PL (United Kingdom); Stegle, Oliver [Max-Planck-Institute for Biological Cybernetics, Tuebingen (Germany); Winn, John, E-mail: magnus.rattray@manchester.ac.u [Microsoft Research Cambridge, Roger Needham Building, Cambridge, CB3 0FB (United Kingdom)
2009-12-01
Bayesian sparse factor analysis has many applications; for example, it has been applied to the problem of inferring a sparse regulatory network from gene expression data. We describe a number of inference algorithms for Bayesian sparse factor analysis using a slab and spike mixture prior. These include well-established Markov chain Monte Carlo (MCMC) and variational Bayes (VB) algorithms as well as a novel hybrid of VB and Expectation Propagation (EP). For the case of a single latent factor we derive a theory for learning performance using the replica method. We compare the MCMC and VB/EP algorithm results with simulated data to the theoretical prediction. The results for MCMC agree closely with the theory as expected. Results for VB/EP are slightly sub-optimal but show that the new algorithm is effective for sparse inference. In large-scale problems MCMC is infeasible due to computational limitations and the VB/EP algorithm then provides a very useful computationally efficient alternative.
Universal Regularizers For Robust Sparse Coding and Modeling
Ramirez, Ignacio; Sapiro, Guillermo
2010-01-01
Sparse data models, where data is assumed to be well represented as a linear combination of a few elements from a dictionary, have gained considerable attention in recent years, and their use has led to state-of-the-art results in many signal and image processing tasks. It is now well understood that the choice of the sparsity regularization term is critical in the success of such models. Based on a codelength minimization interpretation of sparse coding, and using tools from universal coding...
Deep ensemble learning of sparse regression models for brain disease diagnosis.
Suk, Heung-Il; Lee, Seong-Whan; Shen, Dinggang
2017-04-01
Recent studies on brain imaging analysis witnessed the core roles of machine learning techniques in computer-assisted intervention for brain disease diagnosis. Of various machine-learning techniques, sparse regression models have proved their effectiveness in handling high-dimensional data but with a small number of training samples, especially in medical problems. In the meantime, deep learning methods have been making great successes by outperforming the state-of-the-art performances in various applications. In this paper, we propose a novel framework that combines the two conceptually different methods of sparse regression and deep learning for Alzheimer's disease/mild cognitive impairment diagnosis and prognosis. Specifically, we first train multiple sparse regression models, each of which is trained with different values of a regularization control parameter. Thus, our multiple sparse regression models potentially select different feature subsets from the original feature set; thereby they have different powers to predict the response values, i.e., clinical label and clinical scores in our work. By regarding the response values from our sparse regression models as target-level representations, we then build a deep convolutional neural network for clinical decision making, which thus we call 'Deep Ensemble Sparse Regression Network.' To our best knowledge, this is the first work that combines sparse regression models with deep neural network. In our experiments with the ADNI cohort, we validated the effectiveness of the proposed method by achieving the highest diagnostic accuracies in three classification tasks. We also rigorously analyzed our results and compared with the previous studies on the ADNI cohort in the literature. Copyright © 2017 Elsevier B.V. All rights reserved.
Hierarchical Bayesian sparse image reconstruction with application to MRFM.
Dobigeon, Nicolas; Hero, Alfred O; Tourneret, Jean-Yves
2009-09-01
This paper presents a hierarchical Bayesian model to reconstruct sparse images when the observations are obtained from linear transformations and corrupted by an additive white Gaussian noise. Our hierarchical Bayes model is well suited to such naturally sparse image applications as it seamlessly accounts for properties such as sparsity and positivity of the image via appropriate Bayes priors. We propose a prior that is based on a weighted mixture of a positive exponential distribution and a mass at zero. The prior has hyperparameters that are tuned automatically by marginalization over the hierarchical Bayesian model. To overcome the complexity of the posterior distribution, a Gibbs sampling strategy is proposed. The Gibbs samples can be used to estimate the image to be recovered, e.g., by maximizing the estimated posterior distribution. In our fully Bayesian approach, the posteriors of all the parameters are available. Thus, our algorithm provides more information than other previously proposed sparse reconstruction methods that only give a point estimate. The performance of the proposed hierarchical Bayesian sparse reconstruction method is illustrated on synthetic data and real data collected from a tobacco virus sample using a prototype MRFM instrument.
Efficient coordinated recovery of sparse channels in massive MIMO
Masood, Mudassir
2015-01-01
This paper addresses the problem of estimating sparse channels in massive MIMO-OFDM systems. Most wireless channels are sparse in nature with large delay spread. In addition, these channels as observed by multiple antennas in a neighborhood have approximately common support. The sparsity and common support properties are attractive when it comes to the efficient estimation of large number of channels in massive MIMO systems. Moreover, to avoid pilot contamination and to achieve better spectral efficiency, it is important to use a small number of pilots. We present a novel channel estimation approach which utilizes the sparsity and common support properties to estimate sparse channels and requires a small number of pilots. Two algorithms based on this approach have been developed that perform Bayesian estimates of sparse channels even when the prior is non-Gaussian or unknown. Neighboring antennas share among each other their beliefs about the locations of active channel taps to perform estimation. The coordinated approach improves channel estimates and also reduces the required number of pilots. Further improvement is achieved by the data-aided version of the algorithm. Extensive simulation results are provided to demonstrate the performance of the proposed algorithms.
Late glacial vegetation and climate changes in the high mountains of Bulgaria (Southeast Europe)
International Nuclear Information System (INIS)
Bozilova, E.D.; Tonkov, S.B.
2005-01-01
Full text: The Late glacial vegetation history in the high mountains of Southern Bulgaria (Rila, Pirin, Western Rhodopes) is reconstructed by means of pollen analysis, plant macrofossils and radiocarbon dating of sediments from lakes and peat-bogs located between 1300 and 2200 m a.s.l. The vegetation response to the climate fluctuations after 13000 14 C yrs. BP in the Rila Mountains is bound for the first time to a detailed chronological framework. Two stadial and one interstadial phases are delimited analogous with the Oldest Dryas-Bolling/Allerod-Younger Dryas cycle for Western Europe. During the stadials mountain-steppe vegetation composed of Artemisia, Chenopodiaceae, Poaceae and other cold-resistant herbs dominated at high elevation with sparse stands of Pinus, Betula, and shrubland of Juniperus and Ephedra. The climate improvement in the interstadial resulted in the initial spread of deciduous and coniferous trees (Quercus, Tilia, Corylus, Carpinus, Abies, Picea) from their local refugia below 1000 m. The palaeoecological record from the climate deterioration during the Younger Dryas is documented in thin sections of the cores investigated. (author)
Robust Fringe Projection Profilometry via Sparse Representation.
Budianto; Lun, Daniel P K
2016-04-01
In this paper, a robust fringe projection profilometry (FPP) algorithm using the sparse dictionary learning and sparse coding techniques is proposed. When reconstructing the 3D model of objects, traditional FPP systems often fail to perform if the captured fringe images have a complex scene, such as having multiple and occluded objects. It introduces great difficulty to the phase unwrapping process of an FPP system that can result in serious distortion in the final reconstructed 3D model. For the proposed algorithm, it encodes the period order information, which is essential to phase unwrapping, into some texture patterns and embeds them to the projected fringe patterns. When the encoded fringe image is captured, a modified morphological component analysis and a sparse classification procedure are performed to decode and identify the embedded period order information. It is then used to assist the phase unwrapping process to deal with the different artifacts in the fringe images. Experimental results show that the proposed algorithm can significantly improve the robustness of an FPP system. It performs equally well no matter the fringe images have a simple or complex scene, or are affected due to the ambient lighting of the working environment.
Sparse DOA estimation with polynomial rooting
DEFF Research Database (Denmark)
Xenaki, Angeliki; Gerstoft, Peter; Fernandez Grande, Efren
2015-01-01
Direction-of-arrival (DOA) estimation involves the localization of a few sources from a limited number of observations on an array of sensors. Thus, DOA estimation can be formulated as a sparse signal reconstruction problem and solved efficiently with compressive sensing (CS) to achieve highresol......Direction-of-arrival (DOA) estimation involves the localization of a few sources from a limited number of observations on an array of sensors. Thus, DOA estimation can be formulated as a sparse signal reconstruction problem and solved efficiently with compressive sensing (CS) to achieve...... highresolution imaging. Utilizing the dual optimal variables of the CS optimization problem, it is shown with Monte Carlo simulations that the DOAs are accurately reconstructed through polynomial rooting (Root-CS). Polynomial rooting is known to improve the resolution in several other DOA estimation methods...
A General Sparse Tensor Framework for Electronic Structure Theory.
Manzer, Samuel; Epifanovsky, Evgeny; Krylov, Anna I; Head-Gordon, Martin
2017-03-14
Linear-scaling algorithms must be developed in order to extend the domain of applicability of electronic structure theory to molecules of any desired size. However, the increasing complexity of modern linear-scaling methods makes code development and maintenance a significant challenge. A major contributor to this difficulty is the lack of robust software abstractions for handling block-sparse tensor operations. We therefore report the development of a highly efficient symbolic block-sparse tensor library in order to provide access to high-level software constructs to treat such problems. Our implementation supports arbitrary multi-dimensional sparsity in all input and output tensors. We avoid cumbersome machine-generated code by implementing all functionality as a high-level symbolic C++ language library and demonstrate that our implementation attains very high performance for linear-scaling sparse tensor contractions.
Directory of Open Access Journals (Sweden)
Wei Yang
2014-12-01
Full Text Available Global products of leaf area index (LAI usually show large uncertainties in sparsely vegetated areas because the understory contribution is not negligible in reflectance modeling for the case of low to intermediate canopy cover. Therefore, many efforts have been made to include understory properties in LAI estimation algorithms. Compared with the conventional data bank method, estimation of forest understory properties from satellite data is superior in studies at a global or continental scale over long periods. However, implementation of the current remote sensing method based on multi-angular observations is complicated. As an alternative, a simple method to retrieve understory NDVI (NDVIu for sparse boreal forests was proposed in this study. The method is based on the fact that the bidirectional variation in NDVIu is smaller than that in canopy-level NDVI. To retrieve NDVIu for a certain pixel, linear extrapolation was applied using pixels within a 5 × 5 target-pixel-centered window. The NDVI values were reconstructed from the MODIS BRDF data corresponding to eight different solar-view angles. NDVIu was estimated as the average of the NDVI values corresponding to the position in which the stand NDVI had the smallest angular variation. Validation by a noise-free simulation data set yielded high agreement between estimated and true NDVIu, with R2 and RMSE of 0.99 and 0.03, respectively. Using the MODIS BRDF data, we achieved an estimate of NDVIu close to the in situ measured value (0.61 vs. 0.66 for estimate and measurement, respectively and reasonable seasonal patterns of NDVIu in 2010 to 2013. The results imply a potential application of the retrieved NDVIu to improve the estimation of overstory LAI for sparse boreal forests and ultimately to benefit studies on carbon cycle modeling over high-latitude areas.
Low-rank and sparse modeling for visual analysis
Fu, Yun
2014-01-01
This book provides a view of low-rank and sparse computing, especially approximation, recovery, representation, scaling, coding, embedding and learning among unconstrained visual data. The book includes chapters covering multiple emerging topics in this new field. It links multiple popular research fields in Human-Centered Computing, Social Media, Image Classification, Pattern Recognition, Computer Vision, Big Data, and Human-Computer Interaction. Contains an overview of the low-rank and sparse modeling techniques for visual analysis by examining both theoretical analysis and real-world applic
Sparse BLIP: BLind Iterative Parallel imaging reconstruction using compressed sensing.
She, Huajun; Chen, Rong-Rong; Liang, Dong; DiBella, Edward V R; Ying, Leslie
2014-02-01
To develop a sensitivity-based parallel imaging reconstruction method to reconstruct iteratively both the coil sensitivities and MR image simultaneously based on their prior information. Parallel magnetic resonance imaging reconstruction problem can be formulated as a multichannel sampling problem where solutions are sought analytically. However, the channel functions given by the coil sensitivities in parallel imaging are not known exactly and the estimation error usually leads to artifacts. In this study, we propose a new reconstruction algorithm, termed Sparse BLind Iterative Parallel, for blind iterative parallel imaging reconstruction using compressed sensing. The proposed algorithm reconstructs both the sensitivity functions and the image simultaneously from undersampled data. It enforces the sparseness constraint in the image as done in compressed sensing, but is different from compressed sensing in that the sensing matrix is unknown and additional constraint is enforced on the sensitivities as well. Both phantom and in vivo imaging experiments were carried out with retrospective undersampling to evaluate the performance of the proposed method. Experiments show improvement in Sparse BLind Iterative Parallel reconstruction when compared with Sparse SENSE, JSENSE, IRGN-TV, and L1-SPIRiT reconstructions with the same number of measurements. The proposed Sparse BLind Iterative Parallel algorithm reduces the reconstruction errors when compared to the state-of-the-art parallel imaging methods. Copyright © 2013 Wiley Periodicals, Inc.
Goebel, Juliane; Nensa, Felix; Bomas, Bettina; Schemuth, Haemi P; Maderwald, Stefan; Gratz, Marcel; Quick, Harald H; Schlosser, Thomas; Nassenstein, Kai
2016-12-01
Improved real-time cardiac magnetic resonance (CMR) sequences have currently been introduced, but so far only limited practical experience exists. This study aimed at image reconstruction optimization and clinical validation of a new highly accelerated real-time cine SPARSE-SENSE sequence. Left ventricular (LV) short-axis stacks of a real-time free-breathing SPARSE-SENSE sequence with high spatiotemporal resolution and of a standard segmented cine SSFP sequence were acquired at 1.5 T in 11 volunteers and 15 patients. To determine the optimal iterations, all volunteers' SPARSE-SENSE images were reconstructed using 10-200 iterations, and contrast ratios, image entropies, and reconstruction times were assessed. Subsequently, the patients' SPARSE-SENSE images were reconstructed with the clinically optimal iterations. LV volumetric values were evaluated and compared between both sequences. Sufficient image quality and acceptable reconstruction times were achieved when using 80 iterations. Bland-Altman plots and Passing-Bablok regression showed good agreement for all volumetric parameters. 80 iterations are recommended for iterative SPARSE-SENSE image reconstruction in clinical routine. Real-time cine SPARSE-SENSE yielded comparable volumetric results as the current standard SSFP sequence. Due to its intrinsic low image acquisition times, real-time cine SPARSE-SENSE imaging with iterative image reconstruction seems to be an attractive alternative for LV function analysis. • A highly accelerated real-time CMR sequence using SPARSE-SENSE was evaluated. • SPARSE-SENSE allows free breathing in real-time cardiac cine imaging. • For clinically optimal SPARSE-SENSE image reconstruction, 80 iterations are recommended. • Real-time SPARSE-SENSE imaging yielded comparable volumetric results as the reference SSFP sequence. • The fast SPARSE-SENSE sequence is an attractive alternative to standard SSFP sequences.
Security-enhanced phase encryption assisted by nonlinear optical correlation via sparse phase
International Nuclear Information System (INIS)
Chen, Wen; Chen, Xudong; Wang, Xiaogang
2015-01-01
We propose a method for security-enhanced phase encryption assisted by a nonlinear optical correlation via a sparse phase. Optical configurations are established based on a phase retrieval algorithm for embedding an input image and the secret data into phase-only masks. We found that when one or a few phase-only masks generated during data hiding are sparse, it is possible to integrate these sparse masks into those phase-only masks generated during the encoding of the input image. Synthesized phase-only masks are used for the recovery, and sparse distributions (i.e., binary maps) for generating the incomplete phase-only masks are considered as additional parameters for the recovery of secret data. It is difficult for unauthorized receivers to know that a useful phase has been sparsely distributed in the finally generated phase-only masks for secret-data recovery. Only when the secret data are correctly verified can the input image obtained with valid keys be claimed as targeted information. (paper)
Single and Multiple Object Tracking Using a Multi-Feature Joint Sparse Representation.
Hu, Weiming; Li, Wei; Zhang, Xiaoqin; Maybank, Stephen
2015-04-01
In this paper, we propose a tracking algorithm based on a multi-feature joint sparse representation. The templates for the sparse representation can include pixel values, textures, and edges. In the multi-feature joint optimization, noise or occlusion is dealt with using a set of trivial templates. A sparse weight constraint is introduced to dynamically select the relevant templates from the full set of templates. A variance ratio measure is adopted to adaptively adjust the weights of different features. The multi-feature template set is updated adaptively. We further propose an algorithm for tracking multi-objects with occlusion handling based on the multi-feature joint sparse reconstruction. The observation model based on sparse reconstruction automatically focuses on the visible parts of an occluded object by using the information in the trivial templates. The multi-object tracking is simplified into a joint Bayesian inference. The experimental results show the superiority of our algorithm over several state-of-the-art tracking algorithms.
Low-rank sparse learning for robust visual tracking
Zhang, Tianzhu
2012-01-01
In this paper, we propose a new particle-filter based tracking algorithm that exploits the relationship between particles (candidate targets). By representing particles as sparse linear combinations of dictionary templates, this algorithm capitalizes on the inherent low-rank structure of particle representations that are learned jointly. As such, it casts the tracking problem as a low-rank matrix learning problem. This low-rank sparse tracker (LRST) has a number of attractive properties. (1) Since LRST adaptively updates dictionary templates, it can handle significant changes in appearance due to variations in illumination, pose, scale, etc. (2) The linear representation in LRST explicitly incorporates background templates in the dictionary and a sparse error term, which enables LRST to address the tracking drift problem and to be robust against occlusion respectively. (3) LRST is computationally attractive, since the low-rank learning problem can be efficiently solved as a sequence of closed form update operations, which yield a time complexity that is linear in the number of particles and the template size. We evaluate the performance of LRST by applying it to a set of challenging video sequences and comparing it to 6 popular tracking methods. Our experiments show that by representing particles jointly, LRST not only outperforms the state-of-the-art in tracking accuracy but also significantly improves the time complexity of methods that use a similar sparse linear representation model for particles [1]. © 2012 Springer-Verlag.
Group-sparse representation with dictionary learning for medical image denoising and fusion.
Li, Shutao; Yin, Haitao; Fang, Leyuan
2012-12-01
Recently, sparse representation has attracted a lot of interest in various areas. However, the standard sparse representation does not consider the intrinsic structure, i.e., the nonzero elements occur in clusters, called group sparsity. Furthermore, there is no dictionary learning method for group sparse representation considering the geometrical structure of space spanned by atoms. In this paper, we propose a novel dictionary learning method, called Dictionary Learning with Group Sparsity and Graph Regularization (DL-GSGR). First, the geometrical structure of atoms is modeled as the graph regularization. Then, combining group sparsity and graph regularization, the DL-GSGR is presented, which is solved by alternating the group sparse coding and dictionary updating. In this way, the group coherence of learned dictionary can be enforced small enough such that any signal can be group sparse coded effectively. Finally, group sparse representation with DL-GSGR is applied to 3-D medical image denoising and image fusion. Specifically, in 3-D medical image denoising, a 3-D processing mechanism (using the similarity among nearby slices) and temporal regularization (to perverse the correlations across nearby slices) are exploited. The experimental results on 3-D image denoising and image fusion demonstrate the superiority of our proposed denoising and fusion approaches.
Sparse electromagnetic imaging using nonlinear iterative shrinkage thresholding
Desmal, Abdulla; Bagci, Hakan
2015-01-01
A sparse nonlinear electromagnetic imaging scheme is proposed for reconstructing dielectric contrast of investigation domains from measured fields. The proposed approach constructs the optimization problem by introducing the sparsity constraint to the data misfit between the scattered fields expressed as a nonlinear function of the contrast and the measured fields and solves it using the nonlinear iterative shrinkage thresholding algorithm. The thresholding is applied to the result of every nonlinear Landweber iteration to enforce the sparsity constraint. Numerical results demonstrate the accuracy and efficiency of the proposed method in reconstructing sparse dielectric profiles.
Sparse electromagnetic imaging using nonlinear iterative shrinkage thresholding
Desmal, Abdulla
2015-04-13
A sparse nonlinear electromagnetic imaging scheme is proposed for reconstructing dielectric contrast of investigation domains from measured fields. The proposed approach constructs the optimization problem by introducing the sparsity constraint to the data misfit between the scattered fields expressed as a nonlinear function of the contrast and the measured fields and solves it using the nonlinear iterative shrinkage thresholding algorithm. The thresholding is applied to the result of every nonlinear Landweber iteration to enforce the sparsity constraint. Numerical results demonstrate the accuracy and efficiency of the proposed method in reconstructing sparse dielectric profiles.
On the Automatic Parallelization of Sparse and Irregular Fortran Programs
Directory of Open Access Journals (Sweden)
Yuan Lin
1999-01-01
Full Text Available Automatic parallelization is usually believed to be less effective at exploiting implicit parallelism in sparse/irregular programs than in their dense/regular counterparts. However, not much is really known because there have been few research reports on this topic. In this work, we have studied the possibility of using an automatic parallelizing compiler to detect the parallelism in sparse/irregular programs. The study with a collection of sparse/irregular programs led us to some common loop patterns. Based on these patterns new techniques were derived that produced good speedups when manually applied to our benchmark codes. More importantly, these parallelization methods can be implemented in a parallelizing compiler and can be applied automatically.
Split-Bregman-based sparse-view CT reconstruction
Energy Technology Data Exchange (ETDEWEB)
Vandeghinste, Bert; Vandenberghe, Stefaan [Ghent Univ. (Belgium). Medical Image and Signal Processing (MEDISIP); Goossens, Bart; Pizurica, Aleksandra; Philips, Wilfried [Ghent Univ. (Belgium). Image Processing and Interpretation Research Group (IPI); Beenhouwer, Jan de [Ghent Univ. (Belgium). Medical Image and Signal Processing (MEDISIP); Antwerp Univ., Wilrijk (Belgium). The Vision Lab; Staelens, Steven [Ghent Univ. (Belgium). Medical Image and Signal Processing (MEDISIP); Antwerp Univ., Edegem (Belgium). Molecular Imaging Centre Antwerp
2011-07-01
Total variation minimization has been extensively researched for image denoising and sparse view reconstruction. These methods show superior denoising performance for simple images with little texture, but result in texture information loss when applied to more complex images. It could thus be beneficial to use other regularizers within medical imaging. We propose a general regularization method, based on a split-Bregman approach. We show results for this framework combined with a total variation denoising operator, in comparison to ASD-POCS. We show that sparse-view reconstruction and noise regularization is possible. This general method will allow us to investigate other regularizers in the context of regularized CT reconstruction, and decrease the acquisition times in {mu}CT. (orig.)
A framework for general sparse matrix-matrix multiplication on GPUs and heterogeneous processors
DEFF Research Database (Denmark)
Liu, Weifeng; Vinter, Brian
2015-01-01
General sparse matrix-matrix multiplication (SpGEMM) is a fundamental building block for numerous applications such as algebraic multigrid method (AMG), breadth first search and shortest path problem. Compared to other sparse BLAS routines, an efficient parallel SpGEMM implementation has to handle...... extra irregularity from three aspects: (1) the number of nonzero entries in the resulting sparse matrix is unknown in advance, (2) very expensive parallel insert operations at random positions in the resulting sparse matrix dominate the execution time, and (3) load balancing must account for sparse data...... memory space and efficiently utilizes the very limited on-chip scratchpad memory. Parallel insert operations of the nonzero entries are implemented through the GPU merge path algorithm that is experimentally found to be the fastest GPU merge approach. Load balancing builds on the number of necessary...
Optimal Couple Projections for Domain Adaptive Sparse Representation-based Classification.
Zhang, Guoqing; Sun, Huaijiang; Porikli, Fatih; Liu, Yazhou; Sun, Quansen
2017-08-29
In recent years, sparse representation based classification (SRC) is one of the most successful methods and has been shown impressive performance in various classification tasks. However, when the training data has a different distribution than the testing data, the learned sparse representation may not be optimal, and the performance of SRC will be degraded significantly. To address this problem, in this paper, we propose an optimal couple projections for domain-adaptive sparse representation-based classification (OCPD-SRC) method, in which the discriminative features of data in the two domains are simultaneously learned with the dictionary that can succinctly represent the training and testing data in the projected space. OCPD-SRC is designed based on the decision rule of SRC, with the objective to learn coupled projection matrices and a common discriminative dictionary such that the between-class sparse reconstruction residuals of data from both domains are maximized, and the within-class sparse reconstruction residuals of data are minimized in the projected low-dimensional space. Thus, the resulting representations can well fit SRC and simultaneously have a better discriminant ability. In addition, our method can be easily extended to multiple domains and can be kernelized to deal with the nonlinear structure of data. The optimal solution for the proposed method can be efficiently obtained following the alternative optimization method. Extensive experimental results on a series of benchmark databases show that our method is better or comparable to many state-of-the-art methods.
Two-dimensional sparse wavenumber recovery for guided wavefields
Sabeti, Soroosh; Harley, Joel B.
2018-04-01
The multi-modal and dispersive behavior of guided waves is often characterized by their dispersion curves, which describe their frequency-wavenumber behavior. In prior work, compressive sensing based techniques, such as sparse wavenumber analysis (SWA), have been capable of recovering dispersion curves from limited data samples. A major limitation of SWA, however, is the assumption that the structure is isotropic. As a result, SWA fails when applied to composites and other anisotropic structures. There have been efforts to address this issue in the literature, but they either are not easily generalizable or do not sufficiently express the data. In this paper, we enhance the existing approaches by employing a two-dimensional wavenumber model to account for direction-dependent velocities in anisotropic media. We integrate this model with tools from compressive sensing to reconstruct a wavefield from incomplete data. Specifically, we create a modified two-dimensional orthogonal matching pursuit algorithm that takes an undersampled wavefield image, with specified unknown elements, and determines its sparse wavenumber characteristics. We then recover the entire wavefield from the sparse representations obtained with our small number of data samples.
Sparse matrix test collections
Energy Technology Data Exchange (ETDEWEB)
Duff, I.
1996-12-31
This workshop will discuss plans for coordinating and developing sets of test matrices for the comparison and testing of sparse linear algebra software. We will talk of plans for the next release (Release 2) of the Harwell-Boeing Collection and recent work on improving the accessibility of this Collection and others through the World Wide Web. There will only be three talks of about 15 to 20 minutes followed by a discussion from the floor.
JiTTree: A Just-in-Time Compiled Sparse GPU Volume Data Structure
Labschutz, Matthias
2015-08-12
Sparse volume data structures enable the efficient representation of large but sparse volumes in GPU memory for computation and visualization. However, the choice of a specific data structure for a given data set depends on several factors, such as the memory budget, the sparsity of the data, and data access patterns. In general, there is no single optimal sparse data structure, but a set of several candidates with individual strengths and drawbacks. One solution to this problem are hybrid data structures which locally adapt themselves to the sparsity. However, they typically suffer from increased traversal overhead which limits their utility in many applications. This paper presents JiTTree, a novel sparse hybrid volume data structure that uses just-in-time compilation to overcome these problems. By combining multiple sparse data structures and reducing traversal overhead we leverage their individual advantages. We demonstrate that hybrid data structures adapt well to a large range of data sets. They are especially superior to other sparse data structures for data sets that locally vary in sparsity. Possible optimization criteria are memory, performance and a combination thereof. Through just-in-time (JIT) compilation, JiTTree reduces the traversal overhead of the resulting optimal data structure. As a result, our hybrid volume data structure enables efficient computations on the GPU, while being superior in terms of memory usage when compared to non-hybrid data structures.
JiTTree: A Just-in-Time Compiled Sparse GPU Volume Data Structure
Labschutz, Matthias; Bruckner, Stefan; Groller, M. Eduard; Hadwiger, Markus; Rautek, Peter
2015-01-01
Sparse volume data structures enable the efficient representation of large but sparse volumes in GPU memory for computation and visualization. However, the choice of a specific data structure for a given data set depends on several factors, such as the memory budget, the sparsity of the data, and data access patterns. In general, there is no single optimal sparse data structure, but a set of several candidates with individual strengths and drawbacks. One solution to this problem are hybrid data structures which locally adapt themselves to the sparsity. However, they typically suffer from increased traversal overhead which limits their utility in many applications. This paper presents JiTTree, a novel sparse hybrid volume data structure that uses just-in-time compilation to overcome these problems. By combining multiple sparse data structures and reducing traversal overhead we leverage their individual advantages. We demonstrate that hybrid data structures adapt well to a large range of data sets. They are especially superior to other sparse data structures for data sets that locally vary in sparsity. Possible optimization criteria are memory, performance and a combination thereof. Through just-in-time (JIT) compilation, JiTTree reduces the traversal overhead of the resulting optimal data structure. As a result, our hybrid volume data structure enables efficient computations on the GPU, while being superior in terms of memory usage when compared to non-hybrid data structures.
JiTTree: A Just-in-Time Compiled Sparse GPU Volume Data Structure.
Labschütz, Matthias; Bruckner, Stefan; Gröller, M Eduard; Hadwiger, Markus; Rautek, Peter
2016-01-01
Sparse volume data structures enable the efficient representation of large but sparse volumes in GPU memory for computation and visualization. However, the choice of a specific data structure for a given data set depends on several factors, such as the memory budget, the sparsity of the data, and data access patterns. In general, there is no single optimal sparse data structure, but a set of several candidates with individual strengths and drawbacks. One solution to this problem are hybrid data structures which locally adapt themselves to the sparsity. However, they typically suffer from increased traversal overhead which limits their utility in many applications. This paper presents JiTTree, a novel sparse hybrid volume data structure that uses just-in-time compilation to overcome these problems. By combining multiple sparse data structures and reducing traversal overhead we leverage their individual advantages. We demonstrate that hybrid data structures adapt well to a large range of data sets. They are especially superior to other sparse data structures for data sets that locally vary in sparsity. Possible optimization criteria are memory, performance and a combination thereof. Through just-in-time (JIT) compilation, JiTTree reduces the traversal overhead of the resulting optimal data structure. As a result, our hybrid volume data structure enables efficient computations on the GPU, while being superior in terms of memory usage when compared to non-hybrid data structures.
Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model
Directory of Open Access Journals (Sweden)
Qi Yuan(Alan
2010-01-01
Full Text Available Abstract The problem of uncovering transcriptional regulation by transcription factors (TFs based on microarray data is considered. A novel Bayesian sparse correlated rectified factor model (BSCRFM is proposed that models the unknown TF protein level activity, the correlated regulations between TFs, and the sparse nature of TF-regulated genes. The model admits prior knowledge from existing database regarding TF-regulated target genes based on a sparse prior and through a developed Gibbs sampling algorithm, a context-specific transcriptional regulatory network specific to the experimental condition of the microarray data can be obtained. The proposed model and the Gibbs sampling algorithm were evaluated on the simulated systems, and results demonstrated the validity and effectiveness of the proposed approach. The proposed model was then applied to the breast cancer microarray data of patients with Estrogen Receptor positive ( status and Estrogen Receptor negative ( status, respectively.
Magnetic Resonance Super-resolution Imaging Measurement with Dictionary-optimized Sparse Learning
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Li Jun-Bao
2017-06-01
Full Text Available Magnetic Resonance Super-resolution Imaging Measurement (MRIM is an effective way of measuring materials. MRIM has wide applications in physics, chemistry, biology, geology, medical and material science, especially in medical diagnosis. It is feasible to improve the resolution of MR imaging through increasing radiation intensity, but the high radiation intensity and the longtime of magnetic field harm the human body. Thus, in the practical applications the resolution of hardware imaging reaches the limitation of resolution. Software-based super-resolution technology is effective to improve the resolution of image. This work proposes a framework of dictionary-optimized sparse learning based MR super-resolution method. The framework is to solve the problem of sample selection for dictionary learning of sparse reconstruction. The textural complexity-based image quality representation is proposed to choose the optimal samples for dictionary learning. Comprehensive experiments show that the dictionary-optimized sparse learning improves the performance of sparse representation.
Compact data structure and scalable algorithms for the sparse grid technique
Murarasu, Alin
2011-01-01
The sparse grid discretization technique enables a compressed representation of higher-dimensional functions. In its original form, it relies heavily on recursion and complex data structures, thus being far from well-suited for GPUs. In this paper, we describe optimizations that enable us to implement compression and decompression, the crucial sparse grid algorithms for our application, on Nvidia GPUs. The main idea consists of a bijective mapping between the set of points in a multi-dimensional sparse grid and a set of consecutive natural numbers. The resulting data structure consumes a minimum amount of memory. For a 10-dimensional sparse grid with approximately 127 million points, it consumes up to 30 times less memory than trees or hash tables which are typically used. Compared to a sequential CPU implementation, the speedups achieved on GPU are up to 17 for compression and up to 70 for decompression, respectively. We show that the optimizations are also applicable to multicore CPUs. Copyright © 2011 ACM.
Multisnapshot Sparse Bayesian Learning for DOA
DEFF Research Database (Denmark)
Gerstoft, Peter; Mecklenbrauker, Christoph F.; Xenaki, Angeliki
2016-01-01
The directions of arrival (DOA) of plane waves are estimated from multisnapshot sensor array data using sparse Bayesian learning (SBL). The prior for the source amplitudes is assumed independent zero-mean complex Gaussian distributed with hyperparameters, the unknown variances (i.e., the source...
Continuous speech recognition with sparse coding
CSIR Research Space (South Africa)
Smit, WJ
2009-04-01
Full Text Available generative model. The spike train is classified by making use of a spike train model and dynamic programming. It is computationally expensive to find a sparse code. We use an iterative subset selection algorithm with quadratic programming for this process...
Interception of radioactive fallout by vegetation
International Nuclear Information System (INIS)
Chamberlain, A.C.; Garland, J.A.
1991-12-01
A review has been carried out of information on the fraction of radioactive material, deposited by dry or wet deposition processes, that is intercepted by vegetation. The amount of information available is limited, but it is clear that a substantial fraction may be intercepted in some circumstances. In dry deposition, the results of measurements indicate that interception decreases with increasing particle size for particles larger than about 40 μm. In low volume water sprays, interception fractions for 7 Be, 89 Sr and microspheres of 3 to 25 μm diameter were similar, but that for periodate was lower. The fraction intercepted decreased with an increase in the amount of simulated rainfall. The data are particularly sparse for dry deposition of particles smaller than 30 μm diameter. In addition, there is no information on interception at the moderate rates of rainfall common in Britain, and little is known of the differences between various species of plants. (author)
A density functional for sparse matter
DEFF Research Database (Denmark)
Langreth, D.C.; Lundqvist, Bengt; Chakarova-Kack, S.D.
2009-01-01
forces in molecules, to adsorbed molecules, like benzene, naphthalene, phenol and adenine on graphite, alumina and metals, to polymer and carbon nanotube (CNT) crystals, and hydrogen storage in graphite and metal-organic frameworks (MOFs), and to the structure of DNA and of DNA with intercalators......Sparse matter is abundant and has both strong local bonds and weak nonbonding forces, in particular nonlocal van der Waals (vdW) forces between atoms separated by empty space. It encompasses a broad spectrum of systems, like soft matter, adsorption systems and biostructures. Density-functional...... theory (DFT), long since proven successful for dense matter, seems now to have come to a point, where useful extensions to sparse matter are available. In particular, a functional form, vdW-DF (Dion et al 2004 Phys. Rev. Lett. 92 246401; Thonhauser et al 2007 Phys. Rev. B 76 125112), has been proposed...
Sparse learning of stochastic dynamical equations
Boninsegna, Lorenzo; Nüske, Feliks; Clementi, Cecilia
2018-06-01
With the rapid increase of available data for complex systems, there is great interest in the extraction of physically relevant information from massive datasets. Recently, a framework called Sparse Identification of Nonlinear Dynamics (SINDy) has been introduced to identify the governing equations of dynamical systems from simulation data. In this study, we extend SINDy to stochastic dynamical systems which are frequently used to model biophysical processes. We prove the asymptotic correctness of stochastic SINDy in the infinite data limit, both in the original and projected variables. We discuss algorithms to solve the sparse regression problem arising from the practical implementation of SINDy and show that cross validation is an essential tool to determine the right level of sparsity. We demonstrate the proposed methodology on two test systems, namely, the diffusion in a one-dimensional potential and the projected dynamics of a two-dimensional diffusion process.
A novel method to design sparse linear arrays for ultrasonic phased array.
Yang, Ping; Chen, Bin; Shi, Ke-Ren
2006-12-22
In ultrasonic phased array testing, a sparse array can increase the resolution by enlarging the aperture without adding system complexity. Designing a sparse array involves choosing the best or a better configuration from a large number of candidate arrays. We firstly designed sparse arrays by using a genetic algorithm, but found that the arrays have poor performance and poor consistency. So, a method based on the Minimum Redundancy Linear Array was then adopted. Some elements are determined by the minimum-redundancy array firstly in order to ensure spatial resolution and then a genetic algorithm is used to optimize the remaining elements. Sparse arrays designed by this method have much better performance and consistency compared to the arrays designed only by a genetic algorithm. Both simulation and experiment confirm the effectiveness.
Multiple instance learning tracking method with local sparse representation
Xie, Chengjun
2013-10-01
When objects undergo large pose change, illumination variation or partial occlusion, most existed visual tracking algorithms tend to drift away from targets and even fail in tracking them. To address this issue, in this study, the authors propose an online algorithm by combining multiple instance learning (MIL) and local sparse representation for tracking an object in a video system. The key idea in our method is to model the appearance of an object by local sparse codes that can be formed as training data for the MIL framework. First, local image patches of a target object are represented as sparse codes with an overcomplete dictionary, where the adaptive representation can be helpful in overcoming partial occlusion in object tracking. Then MIL learns the sparse codes by a classifier to discriminate the target from the background. Finally, results from the trained classifier are input into a particle filter framework to sequentially estimate the target state over time in visual tracking. In addition, to decrease the visual drift because of the accumulative errors when updating the dictionary and classifier, a two-step object tracking method combining a static MIL classifier with a dynamical MIL classifier is proposed. Experiments on some publicly available benchmarks of video sequences show that our proposed tracker is more robust and effective than others. © The Institution of Engineering and Technology 2013.
Sparse linear models: Variational approximate inference and Bayesian experimental design
International Nuclear Information System (INIS)
Seeger, Matthias W
2009-01-01
A wide range of problems such as signal reconstruction, denoising, source separation, feature selection, and graphical model search are addressed today by posterior maximization for linear models with sparsity-favouring prior distributions. The Bayesian posterior contains useful information far beyond its mode, which can be used to drive methods for sampling optimization (active learning), feature relevance ranking, or hyperparameter estimation, if only this representation of uncertainty can be approximated in a tractable manner. In this paper, we review recent results for variational sparse inference, and show that they share underlying computational primitives. We discuss how sampling optimization can be implemented as sequential Bayesian experimental design. While there has been tremendous recent activity to develop sparse estimation, little attendance has been given to sparse approximate inference. In this paper, we argue that many problems in practice, such as compressive sensing for real-world image reconstruction, are served much better by proper uncertainty approximations than by ever more aggressive sparse estimation algorithms. Moreover, since some variational inference methods have been given strong convex optimization characterizations recently, theoretical analysis may become possible, promising new insights into nonlinear experimental design.
Sparse linear models: Variational approximate inference and Bayesian experimental design
Energy Technology Data Exchange (ETDEWEB)
Seeger, Matthias W [Saarland University and Max Planck Institute for Informatics, Campus E1.4, 66123 Saarbruecken (Germany)
2009-12-01
A wide range of problems such as signal reconstruction, denoising, source separation, feature selection, and graphical model search are addressed today by posterior maximization for linear models with sparsity-favouring prior distributions. The Bayesian posterior contains useful information far beyond its mode, which can be used to drive methods for sampling optimization (active learning), feature relevance ranking, or hyperparameter estimation, if only this representation of uncertainty can be approximated in a tractable manner. In this paper, we review recent results for variational sparse inference, and show that they share underlying computational primitives. We discuss how sampling optimization can be implemented as sequential Bayesian experimental design. While there has been tremendous recent activity to develop sparse estimation, little attendance has been given to sparse approximate inference. In this paper, we argue that many problems in practice, such as compressive sensing for real-world image reconstruction, are served much better by proper uncertainty approximations than by ever more aggressive sparse estimation algorithms. Moreover, since some variational inference methods have been given strong convex optimization characterizations recently, theoretical analysis may become possible, promising new insights into nonlinear experimental design.
Discriminative object tracking via sparse representation and online dictionary learning.
Xie, Yuan; Zhang, Wensheng; Li, Cuihua; Lin, Shuyang; Qu, Yanyun; Zhang, Yinghua
2014-04-01
We propose a robust tracking algorithm based on local sparse coding with discriminative dictionary learning and new keypoint matching schema. This algorithm consists of two parts: the local sparse coding with online updated discriminative dictionary for tracking (SOD part), and the keypoint matching refinement for enhancing the tracking performance (KP part). In the SOD part, the local image patches of the target object and background are represented by their sparse codes using an over-complete discriminative dictionary. Such discriminative dictionary, which encodes the information of both the foreground and the background, may provide more discriminative power. Furthermore, in order to adapt the dictionary to the variation of the foreground and background during the tracking, an online learning method is employed to update the dictionary. The KP part utilizes refined keypoint matching schema to improve the performance of the SOD. With the help of sparse representation and online updated discriminative dictionary, the KP part are more robust than the traditional method to reject the incorrect matches and eliminate the outliers. The proposed method is embedded into a Bayesian inference framework for visual tracking. Experimental results on several challenging video sequences demonstrate the effectiveness and robustness of our approach.
MAPPING ALPINE VEGETATION LOCATION PROPERTIES BY DENSE MATCHING
Directory of Open Access Journals (Sweden)
R. Niederheiser
2016-06-01
Full Text Available Highly accurate 3D micro topographic mapping in mountain research demands for light equipment and low cost solutions. Recent developments in structure from motion and dense matching techniques provide promising tools for such applications. In the following, the feasibility of terrestrial photogrammetry for mapping topographic location properties of sparsely vegetated areas in selected European mountain regions is investigated. Changes in species composition at alpine vegetation locations are indicators of climate change consequences, such as the pronounced rise of average temperatures in mountains compared to the global average. Better understanding of climate change effects on plants demand for investigations on a micro-topographic scale. We use professional and consumer grade digital single-lens reflex cameras mapping 288 plots each 3 x 3 m on 18 summits in the Alps and Mediterranean Mountains within the GLORIA (GLobal Observation Research Initiative in Alpine environments network. Image matching tests result in accuracies that are in the order of millimetres in the XY-plane and below 0.5 mm in Z-direction at the second image pyramid level. Reconstructing vegetation proves to be a challenge due to its fine and small structured architecture and its permanent movement by wind during image acquisition, which is omnipresent on mountain summits. The produced 3D point clouds are gridded to 6 mm resolution from which topographic parameters such as slope, aspect and roughness are derived. At a later project stage these parameters will be statistically linked to botanical reference data in order to conclude on relations between specific location properties and species compositions.
Directory of Open Access Journals (Sweden)
Renske Hijbeek
Full Text Available In vegetation science and forest management, tree density is often used as a variable. To determine the value of this variable, reliable field methods are necessary. When vegetation is sparse or not easily accessible, the use of sample plots is not feasible in the field. Therefore, plotless methods, like the Point Centred Quarter Method, are often used as an alternative. In this study we investigate the accuracy of different plotless sampling methods. To this end, tree densities of a mangrove forest were determined and compared with estimates provided by several plotless methods. None of these methods proved accurate across all field sites with mean underestimations up to 97% and mean overestimations up to 53% in the field. Applying the methods to different vegetation patterns shows that when random spatial distributions were used the true density was included within the 95% confidence limits of all the plotless methods tested. It was also found that, besides aggregation and regularity, density trends often found in mangroves contribute to the unreliability. This outcome raises questions about the use of plotless sampling in forest monitoring and management, as well as for estimates of density-based carbon sequestration. We give recommendations to minimize errors in vegetation surveys and recommendations for further in-depth research.
Building Input Adaptive Parallel Applications: A Case Study of Sparse Grid Interpolation
Murarasu, Alin; Weidendorfer, Josef
2012-01-01
bring a substantial contribution to the speedup. By identifying common patterns in the input data, we propose new algorithms for sparse grid interpolation that accelerate the state-of-the-art non-specialized version. Sparse grid interpolation
Jointly-check iterative decoding algorithm for quantum sparse graph codes
International Nuclear Information System (INIS)
Jun-Hu, Shao; Bao-Ming, Bai; Wei, Lin; Lin, Zhou
2010-01-01
For quantum sparse graph codes with stabilizer formalism, the unavoidable girth-four cycles in their Tanner graphs greatly degrade the iterative decoding performance with a standard belief-propagation (BP) algorithm. In this paper, we present a jointly-check iterative algorithm suitable for decoding quantum sparse graph codes efficiently. Numerical simulations show that this modified method outperforms the standard BP algorithm with an obvious performance improvement. (general)
Rotational image deblurring with sparse matrices
DEFF Research Database (Denmark)
Hansen, Per Christian; Nagy, James G.; Tigkos, Konstantinos
2014-01-01
We describe iterative deblurring algorithms that can handle blur caused by a rotation along an arbitrary axis (including the common case of pure rotation). Our algorithms use a sparse-matrix representation of the blurring operation, which allows us to easily handle several different boundary...
Normalization for sparse encoding of odors by a wide-field interneuron.
Papadopoulou, Maria; Cassenaer, Stijn; Nowotny, Thomas; Laurent, Gilles
2011-05-06
Sparse coding presents practical advantages for sensory representations and memory storage. In the insect olfactory system, the representation of general odors is dense in the antennal lobes but sparse in the mushroom bodies, only one synapse downstream. In locusts, this transformation relies on the oscillatory structure of antennal lobe output, feed-forward inhibitory circuits, intrinsic properties of mushroom body neurons, and connectivity between antennal lobe and mushroom bodies. Here we show the existence of a normalizing negative-feedback loop within the mushroom body to maintain sparse output over a wide range of input conditions. This loop consists of an identifiable "giant" nonspiking inhibitory interneuron with ubiquitous connectivity and graded release properties.
Sparse Representation Denoising for Radar High Resolution Range Profiling
Directory of Open Access Journals (Sweden)
Min Li
2014-01-01
Full Text Available Radar high resolution range profile has attracted considerable attention in radar automatic target recognition. In practice, radar return is usually contaminated by noise, which results in profile distortion and recognition performance degradation. To deal with this problem, in this paper, a novel denoising method based on sparse representation is proposed to remove the Gaussian white additive noise. The return is sparsely described in the Fourier redundant dictionary and the denoising problem is described as a sparse representation model. Noise level of the return, which is crucial to the denoising performance but often unknown, is estimated by performing subspace method on the sliding subsequence correlation matrix. Sliding window process enables noise level estimation using only one observation sequence, not only guaranteeing estimation efficiency but also avoiding the influence of profile time-shift sensitivity. Experimental results show that the proposed method can effectively improve the signal-to-noise ratio of the return, leading to a high-quality profile.
The Real-Valued Sparse Direction of Arrival (DOA Estimation Based on the Khatri-Rao Product
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Tao Chen
2016-05-01
Full Text Available There is a problem that complex operation which leads to a heavy calculation burden is required when the direction of arrival (DOA of a sparse signal is estimated by using the array covariance matrix. The solution of the multiple measurement vectors (MMV model is difficult. In this paper, a real-valued sparse DOA estimation algorithm based on the Khatri-Rao (KR product called the L1-RVSKR is proposed. The proposed algorithm is based on the sparse representation of the array covariance matrix. The array covariance matrix is transformed to a real-valued matrix via a unitary transformation so that a real-valued sparse model is achieved. The real-valued sparse model is vectorized for transforming to a single measurement vector (SMV model, and a new virtual overcomplete dictionary is constructed according to the KR product’s property. Finally, the sparse DOA estimation is solved by utilizing the idea of a sparse representation of array covariance vectors (SRACV. The simulation results demonstrate the superior performance and the low computational complexity of the proposed algorithm.
Integrative analysis of multiple diverse omics datasets by sparse group multitask regression
Directory of Open Access Journals (Sweden)
Dongdong eLin
2014-10-01
Full Text Available A variety of high throughput genome-wide assays enable the exploration of genetic risk factors underlying complex traits. Although these studies have remarkable impact on identifying susceptible biomarkers, they suffer from issues such as limited sample size and low reproducibility. Combining individual studies of different genetic levels/platforms has the promise to improve the power and consistency of biomarker identification. In this paper, we propose a novel integrative method, namely sparse group multitask regression, for integrating diverse omics datasets, platforms and populations to identify risk genes/factors of complex diseases. This method combines multitask learning with sparse group regularization, which will: 1 treat the biomarker identification in each single study as a task and then combine them by multitask learning; 2 group variables from all studies for identifying significant genes; 3 enforce sparse constraint on groups of variables to overcome the ‘small sample, but large variables’ problem. We introduce two sparse group penalties: sparse group lasso and sparse group ridge in our multitask model, and provide an effective algorithm for each model. In addition, we propose a significance test for the identification of potential risk genes. Two simulation studies are performed to evaluate the performance of our integrative method by comparing it with conventional meta-analysis method. The results show that our sparse group multitask method outperforms meta-analysis method significantly. In an application to our osteoporosis studies, 7 genes are identified as significant genes by our method and are found to have significant effects in other three independent studies for validation. The most significant gene SOD2 has been identified in our previous osteoporosis study involving the same expression dataset. Several other genes such as TREML2, HTR1E and GLO1 are shown to be novel susceptible genes for osteoporosis, as confirmed
A modified sparse reconstruction method for three-dimensional synthetic aperture radar image
Zhang, Ziqiang; Ji, Kefeng; Song, Haibo; Zou, Huanxin
2018-03-01
There is an increasing interest in three-dimensional Synthetic Aperture Radar (3-D SAR) imaging from observed sparse scattering data. However, the existing 3-D sparse imaging method requires large computing times and storage capacity. In this paper, we propose a modified method for the sparse 3-D SAR imaging. The method processes the collection of noisy SAR measurements, usually collected over nonlinear flight paths, and outputs 3-D SAR imagery. Firstly, the 3-D sparse reconstruction problem is transformed into a series of 2-D slices reconstruction problem by range compression. Then the slices are reconstructed by the modified SL0 (smoothed l0 norm) reconstruction algorithm. The improved algorithm uses hyperbolic tangent function instead of the Gaussian function to approximate the l0 norm and uses the Newton direction instead of the steepest descent direction, which can speed up the convergence rate of the SL0 algorithm. Finally, numerical simulation results are given to demonstrate the effectiveness of the proposed algorithm. It is shown that our method, compared with existing 3-D sparse imaging method, performs better in reconstruction quality and the reconstruction time.
Porting of the DBCSR library for Sparse Matrix-Matrix Multiplications to Intel Xeon Phi systems
Bethune, Iain; Gloess, Andeas; Hutter, Juerg; Lazzaro, Alfio; Pabst, Hans; Reid, Fiona
2017-01-01
Multiplication of two sparse matrices is a key operation in the simulation of the electronic structure of systems containing thousands of atoms and electrons. The highly optimized sparse linear algebra library DBCSR (Distributed Block Compressed Sparse Row) has been specifically designed to efficiently perform such sparse matrix-matrix multiplications. This library is the basic building block for linear scaling electronic structure theory and low scaling correlated methods in CP2K. It is para...
Fast Solution in Sparse LDA for Binary Classification
Moghaddam, Baback
2010-01-01
An algorithm that performs sparse linear discriminant analysis (Sparse-LDA) finds near-optimal solutions in far less time than the prior art when specialized to binary classification (of 2 classes). Sparse-LDA is a type of feature- or variable- selection problem with numerous applications in statistics, machine learning, computer vision, computational finance, operations research, and bio-informatics. Because of its combinatorial nature, feature- or variable-selection problems are NP-hard or computationally intractable in cases involving more than 30 variables or features. Therefore, one typically seeks approximate solutions by means of greedy search algorithms. The prior Sparse-LDA algorithm was a greedy algorithm that considered the best variable or feature to add/ delete to/ from its subsets in order to maximally discriminate between multiple classes of data. The present algorithm is designed for the special but prevalent case of 2-class or binary classification (e.g. 1 vs. 0, functioning vs. malfunctioning, or change versus no change). The present algorithm provides near-optimal solutions on large real-world datasets having hundreds or even thousands of variables or features (e.g. selecting the fewest wavelength bands in a hyperspectral sensor to do terrain classification) and does so in typical computation times of minutes as compared to days or weeks as taken by the prior art. Sparse LDA requires solving generalized eigenvalue problems for a large number of variable subsets (represented by the submatrices of the input within-class and between-class covariance matrices). In the general (fullrank) case, the amount of computation scales at least cubically with the number of variables and thus the size of the problems that can be solved is limited accordingly. However, in binary classification, the principal eigenvalues can be found using a special analytic formula, without resorting to costly iterative techniques. The present algorithm exploits this analytic
Sparse Localization with a Mobile Beacon Based on LU Decomposition in Wireless Sensor Networks
Directory of Open Access Journals (Sweden)
Chunhui Zhao
2015-09-01
Full Text Available Node localization is the core in wireless sensor network. It can be solved by powerful beacons, which are equipped with global positioning system devices to know their location information. In this article, we present a novel sparse localization approach with a mobile beacon based on LU decomposition. Our scheme firstly translates node localization problem into a 1-sparse vector recovery problem by establishing sparse localization model. Then, LU decomposition pre-processing is adopted to solve the problem that measurement matrix does not meet the re¬stricted isometry property. Later, the 1-sparse vector can be exactly recovered by compressive sensing. Finally, as the 1-sparse vector is approximate sparse, weighted Cen¬troid scheme is introduced to accurately locate the node. Simulation and analysis show that our scheme has better localization performance and lower requirement for the mobile beacon than MAP+GC, MAP-M, and MAP-MN schemes. In addition, the obstacles and DOI have little effect on the novel scheme, and it has great localization performance under low SNR, thus, the scheme proposed is robust.
Robust visual tracking via multiscale deep sparse networks
Wang, Xin; Hou, Zhiqiang; Yu, Wangsheng; Xue, Yang; Jin, Zefenfen; Dai, Bo
2017-04-01
In visual tracking, deep learning with offline pretraining can extract more intrinsic and robust features. It has significant success solving the tracking drift in a complicated environment. However, offline pretraining requires numerous auxiliary training datasets and is considerably time-consuming for tracking tasks. To solve these problems, a multiscale sparse networks-based tracker (MSNT) under the particle filter framework is proposed. Based on the stacked sparse autoencoders and rectifier linear unit, the tracker has a flexible and adjustable architecture without the offline pretraining process and exploits the robust and powerful features effectively only through online training of limited labeled data. Meanwhile, the tracker builds four deep sparse networks of different scales, according to the target's profile type. During tracking, the tracker selects the matched tracking network adaptively in accordance with the initial target's profile type. It preserves the inherent structural information more efficiently than the single-scale networks. Additionally, a corresponding update strategy is proposed to improve the robustness of the tracker. Extensive experimental results on a large scale benchmark dataset show that the proposed method performs favorably against state-of-the-art methods in challenging environments.
Efficient MATLAB computations with sparse and factored tensors.
Energy Technology Data Exchange (ETDEWEB)
Bader, Brett William; Kolda, Tamara Gibson (Sandia National Lab, Livermore, CA)
2006-12-01
In this paper, the term tensor refers simply to a multidimensional or N-way array, and we consider how specially structured tensors allow for efficient storage and computation. First, we study sparse tensors, which have the property that the vast majority of the elements are zero. We propose storing sparse tensors using coordinate format and describe the computational efficiency of this scheme for various mathematical operations, including those typical to tensor decomposition algorithms. Second, we study factored tensors, which have the property that they can be assembled from more basic components. We consider two specific types: a Tucker tensor can be expressed as the product of a core tensor (which itself may be dense, sparse, or factored) and a matrix along each mode, and a Kruskal tensor can be expressed as the sum of rank-1 tensors. We are interested in the case where the storage of the components is less than the storage of the full tensor, and we demonstrate that many elementary operations can be computed using only the components. All of the efficiencies described in this paper are implemented in the Tensor Toolbox for MATLAB.
Subspace Based Blind Sparse Channel Estimation
DEFF Research Database (Denmark)
Hayashi, Kazunori; Matsushima, Hiroki; Sakai, Hideaki
2012-01-01
The paper proposes a subspace based blind sparse channel estimation method using 1–2 optimization by replacing the 2–norm minimization in the conventional subspace based method by the 1–norm minimization problem. Numerical results confirm that the proposed method can significantly improve...
Sparse grid techniques for particle-in-cell schemes
Ricketson, L. F.; Cerfon, A. J.
2017-02-01
We propose the use of sparse grids to accelerate particle-in-cell (PIC) schemes. By using the so-called ‘combination technique’ from the sparse grids literature, we are able to dramatically increase the size of the spatial cells in multi-dimensional PIC schemes while paying only a slight penalty in grid-based error. The resulting increase in cell size allows us to reduce the statistical noise in the simulation without increasing total particle number. We present initial proof-of-principle results from test cases in two and three dimensions that demonstrate the new scheme’s efficiency, both in terms of computation time and memory usage.
Feature selection and multi-kernel learning for sparse representation on a manifold
Wang, Jim Jing-Yan; Bensmail, Halima; Gao, Xin
2014-01-01
combination of some basic items in a dictionary. Gao etal. (2013) recently proposed Laplacian sparse coding by regularizing the sparse codes with an affinity graph. However, due to the noisy features and nonlinear distribution of the data samples, the affinity
Koppad, A. G.; Janagoudar, B. S.
2017-10-01
The study was conducted in Uttara Kannada districts during the year 2012-2014. The study area lies between 13.92° N to 15.52° N latitude and 74.08° E to 75.09° E longitude with an area of 10,215 km2. The Indian satellite IRS P6 LISS-III imageries were used to classify the land use land cover classes with ground truth data collected with GPS through supervised classification in ERDAS software. The land use and land cover classes identified were dense forest, horticulture plantation, sparse forest, forest plantation, open land and agriculture land. The dense forest covered an area of 63.32 % (6468.70 sq km) followed by agriculture 12.88 % (1315.31 sq. km), sparse forest 10.59 % (1081.37 sq. km), open land 6.09 % (622.37 sq. km), horticulture plantation and least was forest plantation (1.07 %). Settlement, stony land and water body together cover about 4.26 percent of the area. The study indicated that the aspect and altitude influenced the forest types and vegetation pattern. The NDVI map was prepared which indicated that healthy vegetation is represented by high NDVI values between 0.1 and 1. The non- vegetated features such as water bodies, settlement, and stony land indicated less than 0.1 values. The decrease in forest area in some places was due to anthropogenic activities. The thematic map of land use land cover classes was prepared using Arc GIS Software.
Group sparse canonical correlation analysis for genomic data integration.
Lin, Dongdong; Zhang, Jigang; Li, Jingyao; Calhoun, Vince D; Deng, Hong-Wen; Wang, Yu-Ping
2013-08-12
The emergence of high-throughput genomic datasets from different sources and platforms (e.g., gene expression, single nucleotide polymorphisms (SNP), and copy number variation (CNV)) has greatly enhanced our understandings of the interplay of these genomic factors as well as their influences on the complex diseases. It is challenging to explore the relationship between these different types of genomic data sets. In this paper, we focus on a multivariate statistical method, canonical correlation analysis (CCA) method for this problem. Conventional CCA method does not work effectively if the number of data samples is significantly less than that of biomarkers, which is a typical case for genomic data (e.g., SNPs). Sparse CCA (sCCA) methods were introduced to overcome such difficulty, mostly using penalizations with l-1 norm (CCA-l1) or the combination of l-1and l-2 norm (CCA-elastic net). However, they overlook the structural or group effect within genomic data in the analysis, which often exist and are important (e.g., SNPs spanning a gene interact and work together as a group). We propose a new group sparse CCA method (CCA-sparse group) along with an effective numerical algorithm to study the mutual relationship between two different types of genomic data (i.e., SNP and gene expression). We then extend the model to a more general formulation that can include the existing sCCA models. We apply the model to feature/variable selection from two data sets and compare our group sparse CCA method with existing sCCA methods on both simulation and two real datasets (human gliomas data and NCI60 data). We use a graphical representation of the samples with a pair of canonical variates to demonstrate the discriminating characteristic of the selected features. Pathway analysis is further performed for biological interpretation of those features. The CCA-sparse group method incorporates group effects of features into the correlation analysis while performs individual feature
Information filtering in sparse online systems: recommendation via semi-local diffusion.
Zeng, Wei; Zeng, An; Shang, Ming-Sheng; Zhang, Yi-Cheng
2013-01-01
With the rapid growth of the Internet and overwhelming amount of information and choices that people are confronted with, recommender systems have been developed to effectively support users' decision-making process in the online systems. However, many recommendation algorithms suffer from the data sparsity problem, i.e. the user-object bipartite networks are so sparse that algorithms cannot accurately recommend objects for users. This data sparsity problem makes many well-known recommendation algorithms perform poorly. To solve the problem, we propose a recommendation algorithm based on the semi-local diffusion process on the user-object bipartite network. The simulation results on two sparse datasets, Amazon and Bookcross, show that our method significantly outperforms the state-of-the-art methods especially for those small-degree users. Two personalized semi-local diffusion methods are proposed which further improve the recommendation accuracy. Finally, our work indicates that sparse online systems are essentially different from the dense online systems, so it is necessary to reexamine former algorithms and conclusions based on dense data in sparse systems.
Codesign of Beam Pattern and Sparse Frequency Waveforms for MIMO Radar
Directory of Open Access Journals (Sweden)
Chaoyun Mai
2015-01-01
Full Text Available Multiple-input multiple-output (MIMO radar takes the advantages of high degrees of freedom for beam pattern design and waveform optimization, because each antenna in centralized MIMO radar system can transmit different signal waveforms. When continuous band is divided into several pieces, sparse frequency radar waveforms play an important role due to the special pattern of the sparse spectrum. In this paper, we start from the covariance matrix of the transmitted waveform and extend the concept of sparse frequency design to the study of MIMO radar beam pattern. With this idea in mind, we first solve the problem of semidefinite constraint by optimization tools and get the desired covariance matrix of the ideal beam pattern. Then, we use the acquired covariance matrix and generalize the objective function by adding the constraint of both constant modulus of the signals and corresponding spectrum. Finally, we solve the objective function by the cyclic algorithm and obtain the sparse frequency MIMO radar waveforms with desired beam pattern. The simulation results verify the effectiveness of this method.
Vegetation growth patterns on six rock-covered UMTRA Project disposal cells
International Nuclear Information System (INIS)
1992-02-01
This study assessed vegetation growth patterns, the potential impacts of vegetation growth on disposal cell cover integrity, and possible measures that could be taken to monitor and/or control plant growth, where necessary, on six Uranium Mill Tailings Remedial Action (UMTRA) Project rock-covered disposal cells. A large-scale invasion of volunteer plants was observed on the Shiprock and Burrell disposal cells. Plant growth at the South Clive, Green River, and Tuba City disposal cells was sparse except for the south rock apron and south slope of the Tuba City disposal cell, where windblown sand had filled up part of the rock cover and plant growth was observed. The rock-covered topslope of the Collins Ranch disposal cell was intentionally covered with topsoil and vegetated. Plant roots growing on the disposal cells are changing the characteristics of the cover by drying out the radon barrier, encouraging the establishment of soil-building processes in the bedding and radon barrier layers, creating channels in the radon barrier, and facilitating ecological succession, which could lead to the establishment of additional deep-rooted plants on the disposal cells. If left unchecked, plant roots would reach the tailings at the Burrell and Collins Ranch disposal cells within a few years, likely resulting in the transport of contaminants out of the cells
High-SNR spectrum measurement based on Hadamard encoding and sparse reconstruction
Wang, Zhaoxin; Yue, Jiang; Han, Jing; Li, Long; Jin, Yong; Gao, Yuan; Li, Baoming
2017-12-01
The denoising capabilities of the H-matrix and cyclic S-matrix based on the sparse reconstruction, employed in the Pixel of Focal Plane Coded Visible Spectrometer for spectrum measurement are investigated, where the spectrum is sparse in a known basis. In the measurement process, the digital micromirror device plays an important role, which implements the Hadamard coding. In contrast with Hadamard transform spectrometry, based on the shift invariability, this spectrometer may have the advantage of a high efficiency. Simulations and experiments show that the nonlinear solution with a sparse reconstruction has a better signal-to-noise ratio than the linear solution and the H-matrix outperforms the cyclic S-matrix whether the reconstruction method is nonlinear or linear.
Comparison of sparse point distribution models
DEFF Research Database (Denmark)
Erbou, Søren Gylling Hemmingsen; Vester-Christensen, Martin; Larsen, Rasmus
2010-01-01
This paper compares several methods for obtaining sparse and compact point distribution models suited for data sets containing many variables. These are evaluated on a database consisting of 3D surfaces of a section of the pelvic bone obtained from CT scans of 33 porcine carcasses. The superior m...
International Nuclear Information System (INIS)
Leeuwen, W.J.D. van; Huete, A.R.; Duncan, J.; Franklin, J.
1994-01-01
A shrub savannah landscape in Niger was optically characterized utilizing blue, green, red and near-infrared wavelengths. Selected vegetation indices were evaluated for their performance and sensitivity to describe the complex Sahelian soil/vegetation canopies. Bidirectional reflectance factors (BRF) of plants and soils were measured at several view angles, and used as input to various vegetation indices. Both soil and vegetation targets had strong anisotropic reflectance properties, rendering all vegetation index (VI) responses to be a direct function of sun and view geometry. Soil background influences were shown to alter the response of most vegetation indices. N-space greenness had the smallest dynamic range in VI response, but the n-space brightness index provided additional useful information. The global environmental monitoring index (GEMI) showed a large VI dynamic range for bare soils, which was undesirable for a vegetation index. The view angle response of the normalized difference vegetation index (NDVI), atmosphere resistant vegetation index (ARVI) and soil atmosphere resistant vegetation index (SARVI) were asymmetric about nadir for multiple view angles, and were, except for the SARVI, altered seriously by soil moisture and/or soil brightness effects. The soil adjusted vegetation index (SAVI) was least affected by surface soil moisture and was symmetric about nadir for grass vegetation covers. Overall the SAVI, SARVI and the n-space vegetation index performed best under all adverse conditions and were recommended to monitor vegetation growth in the sparsely vegetated Sahelian zone. (author)
Galaxy redshift surveys with sparse sampling
International Nuclear Information System (INIS)
Chiang, Chi-Ting; Wullstein, Philipp; Komatsu, Eiichiro; Jee, Inh; Jeong, Donghui; Blanc, Guillermo A.; Ciardullo, Robin; Gronwall, Caryl; Hagen, Alex; Schneider, Donald P.; Drory, Niv; Fabricius, Maximilian; Landriau, Martin; Finkelstein, Steven; Jogee, Shardha; Cooper, Erin Mentuch; Tuttle, Sarah; Gebhardt, Karl; Hill, Gary J.
2013-01-01
Survey observations of the three-dimensional locations of galaxies are a powerful approach to measure the distribution of matter in the universe, which can be used to learn about the nature of dark energy, physics of inflation, neutrino masses, etc. A competitive survey, however, requires a large volume (e.g., V survey ∼ 10Gpc 3 ) to be covered, and thus tends to be expensive. A ''sparse sampling'' method offers a more affordable solution to this problem: within a survey footprint covering a given survey volume, V survey , we observe only a fraction of the volume. The distribution of observed regions should be chosen such that their separation is smaller than the length scale corresponding to the wavenumber of interest. Then one can recover the power spectrum of galaxies with precision expected for a survey covering a volume of V survey (rather than the volume of the sum of observed regions) with the number density of galaxies given by the total number of observed galaxies divided by V survey (rather than the number density of galaxies within an observed region). We find that regularly-spaced sampling yields an unbiased power spectrum with no window function effect, and deviations from regularly-spaced sampling, which are unavoidable in realistic surveys, introduce calculable window function effects and increase the uncertainties of the recovered power spectrum. On the other hand, we show that the two-point correlation function (pair counting) is not affected by sparse sampling. While we discuss the sparse sampling method within the context of the forthcoming Hobby-Eberly Telescope Dark Energy Experiment, the method is general and can be applied to other galaxy surveys
A Multiobjective Sparse Feature Learning Model for Deep Neural Networks.
Gong, Maoguo; Liu, Jia; Li, Hao; Cai, Qing; Su, Linzhi
2015-12-01
Hierarchical deep neural networks are currently popular learning models for imitating the hierarchical architecture of human brain. Single-layer feature extractors are the bricks to build deep networks. Sparse feature learning models are popular models that can learn useful representations. But most of those models need a user-defined constant to control the sparsity of representations. In this paper, we propose a multiobjective sparse feature learning model based on the autoencoder. The parameters of the model are learnt by optimizing two objectives, reconstruction error and the sparsity of hidden units simultaneously to find a reasonable compromise between them automatically. We design a multiobjective induced learning procedure for this model based on a multiobjective evolutionary algorithm. In the experiments, we demonstrate that the learning procedure is effective, and the proposed multiobjective model can learn useful sparse features.
Uniform sparse bounds for discrete quadratic phase Hilbert transforms
Kesler, Robert; Arias, Darío Mena
2017-09-01
For each α \\in T consider the discrete quadratic phase Hilbert transform acting on finitely supported functions f : Z → C according to H^{α }f(n):= \\sum _{m ≠ 0} e^{iα m^2} f(n - m)/m. We prove that, uniformly in α \\in T , there is a sparse bound for the bilinear form for every pair of finitely supported functions f,g : Z→ C . The sparse bound implies several mapping properties such as weighted inequalities in an intersection of Muckenhoupt and reverse Hölder classes.
Sparse Matrix for ECG Identification with Two-Lead Features
Directory of Open Access Journals (Sweden)
Kuo-Kun Tseng
2015-01-01
Full Text Available Electrocardiograph (ECG human identification has the potential to improve biometric security. However, improvements in ECG identification and feature extraction are required. Previous work has focused on single lead ECG signals. Our work proposes a new algorithm for human identification by mapping two-lead ECG signals onto a two-dimensional matrix then employing a sparse matrix method to process the matrix. And that is the first application of sparse matrix techniques for ECG identification. Moreover, the results of our experiments demonstrate the benefits of our approach over existing methods.
A Non-static Data Layout Enhancing Parallelism and Vectorization in Sparse Grid Algorithms
Buse, Gerrit
2012-06-01
The name sparse grids denotes a highly space-efficient, grid-based numerical technique to approximate high-dimensional functions. Although employed in a broad spectrum of applications from different fields, there have only been few tries to use it in real time visualization (e.g. [1]), due to complex data structures and long algorithm runtime. In this work we present a novel approach inspired by principles of I/0-efficient algorithms. Locally applied coefficient permutations lead to improved cache performance and facilitate the use of vector registers for our sparse grid benchmark problem hierarchization. Based on the compact data structure proposed for regular sparse grids in [2], we developed a new algorithm that outperforms existing implementations on modern multi-core systems by a factor of 37 for a grid size of 127 million points. For larger problems the speedup is even increasing, and with execution times below 1 s, sparse grids are well-suited for visualization applications. Furthermore, we point out how a broad class of sparse grid algorithms can benefit from our approach. © 2012 IEEE.
Jakeman, J. D.; Wildey, T.
2015-01-01
In this paper we present an algorithm for adaptive sparse grid approximations of quantities of interest computed from discretized partial differential equations. We use adjoint-based a posteriori error estimates of the physical discretization error and the interpolation error in the sparse grid to enhance the sparse grid approximation and to drive adaptivity of the sparse grid. Utilizing these error estimates provides significantly more accurate functional values for random samples of the sparse grid approximation. We also demonstrate that alternative refinement strategies based upon a posteriori error estimates can lead to further increases in accuracy in the approximation over traditional hierarchical surplus based strategies. Throughout this paper we also provide and test a framework for balancing the physical discretization error with the stochastic interpolation error of the enhanced sparse grid approximation.
International Nuclear Information System (INIS)
Jakeman, J.D.; Wildey, T.
2015-01-01
In this paper we present an algorithm for adaptive sparse grid approximations of quantities of interest computed from discretized partial differential equations. We use adjoint-based a posteriori error estimates of the physical discretization error and the interpolation error in the sparse grid to enhance the sparse grid approximation and to drive adaptivity of the sparse grid. Utilizing these error estimates provides significantly more accurate functional values for random samples of the sparse grid approximation. We also demonstrate that alternative refinement strategies based upon a posteriori error estimates can lead to further increases in accuracy in the approximation over traditional hierarchical surplus based strategies. Throughout this paper we also provide and test a framework for balancing the physical discretization error with the stochastic interpolation error of the enhanced sparse grid approximation
Vishnukumar, S.; Wilscy, M.
2017-12-01
In this paper, we propose a single image Super-Resolution (SR) method based on Compressive Sensing (CS) and Improved Total Variation (TV) Minimization Sparse Recovery. In the CS framework, low-resolution (LR) image is treated as the compressed version of high-resolution (HR) image. Dictionary Training and Sparse Recovery are the two phases of the method. K-Singular Value Decomposition (K-SVD) method is used for dictionary training and the dictionary represents HR image patches in a sparse manner. Here, only the interpolated version of the LR image is used for training purpose and thereby the structural self similarity inherent in the LR image is exploited. In the sparse recovery phase the sparse representation coefficients with respect to the trained dictionary for LR image patches are derived using Improved TV Minimization method. HR image can be reconstructed by the linear combination of the dictionary and the sparse coefficients. The experimental results show that the proposed method gives better results quantitatively as well as qualitatively on both natural and remote sensing images. The reconstructed images have better visual quality since edges and other sharp details are preserved.
SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics
Will, Sebastian; Otto, Christina; Miladi, Milad; Möhl, Mathias; Backofen, Rolf
2015-01-01
Motivation: RNA-Seq experiments have revealed a multitude of novel ncRNAs. The gold standard for their analysis based on simultaneous alignment and folding suffers from extreme time complexity of O(n6). Subsequently, numerous faster ‘Sankoff-style’ approaches have been suggested. Commonly, the performance of such methods relies on sequence-based heuristics that restrict the search space to optimal or near-optimal sequence alignments; however, the accuracy of sequence-based methods breaks down for RNAs with sequence identities below 60%. Alignment approaches like LocARNA that do not require sequence-based heuristics, have been limited to high complexity (≥ quartic time). Results: Breaking this barrier, we introduce the novel Sankoff-style algorithm ‘sparsified prediction and alignment of RNAs based on their structure ensembles (SPARSE)’, which runs in quadratic time without sequence-based heuristics. To achieve this low complexity, on par with sequence alignment algorithms, SPARSE features strong sparsification based on structural properties of the RNA ensembles. Following PMcomp, SPARSE gains further speed-up from lightweight energy computation. Although all existing lightweight Sankoff-style methods restrict Sankoff’s original model by disallowing loop deletions and insertions, SPARSE transfers the Sankoff algorithm to the lightweight energy model completely for the first time. Compared with LocARNA, SPARSE achieves similar alignment and better folding quality in significantly less time (speedup: 3.7). At similar run-time, it aligns low sequence identity instances substantially more accurate than RAF, which uses sequence-based heuristics. Availability and implementation: SPARSE is freely available at http://www.bioinf.uni-freiburg.de/Software/SPARSE. Contact: backofen@informatik.uni-freiburg.de Supplementary information: Supplementary data are available at Bioinformatics online. PMID:25838465
Greedy Algorithms for Nonnegativity-Constrained Simultaneous Sparse Recovery
Kim, Daeun; Haldar, Justin P.
2016-01-01
This work proposes a family of greedy algorithms to jointly reconstruct a set of vectors that are (i) nonnegative and (ii) simultaneously sparse with a shared support set. The proposed algorithms generalize previous approaches that were designed to impose these constraints individually. Similar to previous greedy algorithms for sparse recovery, the proposed algorithms iteratively identify promising support indices. In contrast to previous approaches, the support index selection procedure has been adapted to prioritize indices that are consistent with both the nonnegativity and shared support constraints. Empirical results demonstrate for the first time that the combined use of simultaneous sparsity and nonnegativity constraints can substantially improve recovery performance relative to existing greedy algorithms that impose less signal structure. PMID:26973368
SPARSE ELECTROMAGNETIC IMAGING USING NONLINEAR LANDWEBER ITERATIONS
Desmal, Abdulla; Bagci, Hakan
2015-01-01
minimization problem is solved using nonlinear Landweber iterations, where at each iteration a thresholding function is applied to enforce the sparseness-promoting L0/L1-norm constraint. The thresholded nonlinear Landweber iterations are applied to several two
Multiuser TOA Estimation Algorithm in DS-CDMA Sparse Channel for Radiolocation
Kim, Sunwoo
This letter considers multiuser time delay estimation in a sparse channel environment for radiolocation. The generalized successive interference cancellation (GSIC) algorithm is used to eliminate the multiple access interference (MAI). To adapt GSIC to sparse channels the alternating maximization (AM) algorithm is considered, and the continuous time delay of each path is estimated without requiring a priori known data sequences.
Effects of sparse sampling schemes on image quality in low-dose CT
International Nuclear Information System (INIS)
Abbas, Sajid; Lee, Taewon; Cho, Seungryong; Shin, Sukyoung; Lee, Rena
2013-01-01
Purpose: Various scanning methods and image reconstruction algorithms are actively investigated for low-dose computed tomography (CT) that can potentially reduce a health-risk related to radiation dose. Particularly, compressive-sensing (CS) based algorithms have been successfully developed for reconstructing images from sparsely sampled data. Although these algorithms have shown promises in low-dose CT, it has not been studied how sparse sampling schemes affect image quality in CS-based image reconstruction. In this work, the authors present several sparse-sampling schemes for low-dose CT, quantitatively analyze their data property, and compare effects of the sampling schemes on the image quality.Methods: Data properties of several sampling schemes are analyzed with respect to the CS-based image reconstruction using two measures: sampling density and data incoherence. The authors present five different sparse sampling schemes, and simulated those schemes to achieve a targeted dose reduction. Dose reduction factors of about 75% and 87.5%, compared to a conventional scan, were tested. A fully sampled circular cone-beam CT data set was used as a reference, and sparse sampling has been realized numerically based on the CBCT data.Results: It is found that both sampling density and data incoherence affect the image quality in the CS-based reconstruction. Among the sampling schemes the authors investigated, the sparse-view, many-view undersampling (MVUS)-fine, and MVUS-moving cases have shown promising results. These sampling schemes produced images with similar image quality compared to the reference image and their structure similarity index values were higher than 0.92 in the mouse head scan with 75% dose reduction.Conclusions: The authors found that in CS-based image reconstructions both sampling density and data incoherence affect the image quality, and suggest that a sampling scheme should be devised and optimized by use of these indicators. With this strategic
Pulse-Width-Modulation of Neutral-Point-Clamped Sparse Matrix Converter
DEFF Research Database (Denmark)
Loh, P.C.; Blaabjerg, Frede; Gao, F.
2007-01-01
input current and output voltage can be achieved with minimized rectification switching loss, rendering the sparse matrix converter as a competitive choice for interfacing the utility grid to (e.g.) defense facilities that require a different frequency supply. As an improvement, sparse matrix converter...... with improved waveform quality. Performances and practicalities of the designed schemes are verified in simulation and experimentally using an implemented laboratory prototype with some representative results captured and presented in the paper....
Nonlinear spike-and-slab sparse coding for interpretable image encoding.
Directory of Open Access Journals (Sweden)
Jacquelyn A Shelton
Full Text Available Sparse coding is a popular approach to model natural images but has faced two main challenges: modelling low-level image components (such as edge-like structures and their occlusions and modelling varying pixel intensities. Traditionally, images are modelled as a sparse linear superposition of dictionary elements, where the probabilistic view of this problem is that the coefficients follow a Laplace or Cauchy prior distribution. We propose a novel model that instead uses a spike-and-slab prior and nonlinear combination of components. With the prior, our model can easily represent exact zeros for e.g. the absence of an image component, such as an edge, and a distribution over non-zero pixel intensities. With the nonlinearity (the nonlinear max combination rule, the idea is to target occlusions; dictionary elements correspond to image components that can occlude each other. There are major consequences of the model assumptions made by both (nonlinear approaches, thus the main goal of this paper is to isolate and highlight differences between them. Parameter optimization is analytically and computationally intractable in our model, thus as a main contribution we design an exact Gibbs sampler for efficient inference which we can apply to higher dimensional data using latent variable preselection. Results on natural and artificial occlusion-rich data with controlled forms of sparse structure show that our model can extract a sparse set of edge-like components that closely match the generating process, which we refer to as interpretable components. Furthermore, the sparseness of the solution closely follows the ground-truth number of components/edges in the images. The linear model did not learn such edge-like components with any level of sparsity. This suggests that our model can adaptively well-approximate and characterize the meaningful generation process.
Stoykov, S.; Atanassov, E.; Margenov, S.
2016-10-01
Many of the scientific applications involve sparse or dense matrix operations, such as solving linear systems, matrix-matrix products, eigensolvers, etc. In what concerns structural nonlinear dynamics, the computations of periodic responses and the determination of stability of the solution are of primary interest. Shooting method iswidely used for obtaining periodic responses of nonlinear systems. The method involves simultaneously operations with sparse and dense matrices. One of the computationally expensive operations in the method is multiplication of sparse by dense matrices. In the current work, a new algorithm for sparse matrix by dense matrix products is presented. The algorithm takes into account the structure of the sparse matrix, which is obtained by space discretization of the nonlinear Mindlin's plate equation of motion by the finite element method. The algorithm is developed to use the vector engine of Intel Xeon Phi coprocessors. It is compared with the standard sparse matrix by dense matrix algorithm and the one developed by Intel MKL and it is shown that by considering the properties of the sparse matrix better algorithms can be developed.
Compressed sensing & sparse filtering
Carmi, Avishy Y; Godsill, Simon J
2013-01-01
This book is aimed at presenting concepts, methods and algorithms ableto cope with undersampled and limited data. One such trend that recently gained popularity and to some extent revolutionised signal processing is compressed sensing. Compressed sensing builds upon the observation that many signals in nature are nearly sparse (or compressible, as they are normally referred to) in some domain, and consequently they can be reconstructed to within high accuracy from far fewer observations than traditionally held to be necessary.Â Apart from compressed sensing this book contains other related app
Example-Based Image Colorization Using Locality Consistent Sparse Representation.
Bo Li; Fuchen Zhao; Zhuo Su; Xiangguo Liang; Yu-Kun Lai; Rosin, Paul L
2017-11-01
Image colorization aims to produce a natural looking color image from a given gray-scale image, which remains a challenging problem. In this paper, we propose a novel example-based image colorization method exploiting a new locality consistent sparse representation. Given a single reference color image, our method automatically colorizes the target gray-scale image by sparse pursuit. For efficiency and robustness, our method operates at the superpixel level. We extract low-level intensity features, mid-level texture features, and high-level semantic features for each superpixel, which are then concatenated to form its descriptor. The collection of feature vectors for all the superpixels from the reference image composes the dictionary. We formulate colorization of target superpixels as a dictionary-based sparse reconstruction problem. Inspired by the observation that superpixels with similar spatial location and/or feature representation are likely to match spatially close regions from the reference image, we further introduce a locality promoting regularization term into the energy formulation, which substantially improves the matching consistency and subsequent colorization results. Target superpixels are colorized based on the chrominance information from the dominant reference superpixels. Finally, to further improve coherence while preserving sharpness, we develop a new edge-preserving filter for chrominance channels with the guidance from the target gray-scale image. To the best of our knowledge, this is the first work on sparse pursuit image colorization from single reference images. Experimental results demonstrate that our colorization method outperforms the state-of-the-art methods, both visually and quantitatively using a user study.
Dose-shaping using targeted sparse optimization
International Nuclear Information System (INIS)
Sayre, George A.; Ruan, Dan
2013-01-01
Purpose: Dose volume histograms (DVHs) are common tools in radiation therapy treatment planning to characterize plan quality. As statistical metrics, DVHs provide a compact summary of the underlying plan at the cost of losing spatial information: the same or similar dose-volume histograms can arise from substantially different spatial dose maps. This is exactly the reason why physicians and physicists scrutinize dose maps even after they satisfy all DVH endpoints numerically. However, up to this point, little has been done to control spatial phenomena, such as the spatial distribution of hot spots, which has significant clinical implications. To this end, the authors propose a novel objective function that enables a more direct tradeoff between target coverage, organ-sparing, and planning target volume (PTV) homogeneity, and presents our findings from four prostate cases, a pancreas case, and a head-and-neck case to illustrate the advantages and general applicability of our method.Methods: In designing the energy minimization objective (E tot sparse ), the authors utilized the following robust cost functions: (1) an asymmetric linear well function to allow differential penalties for underdose, relaxation of prescription dose, and overdose in the PTV; (2) a two-piece linear function to heavily penalize high dose and mildly penalize low and intermediate dose in organs-at risk (OARs); and (3) a total variation energy, i.e., the L 1 norm applied to the first-order approximation of the dose gradient in the PTV. By minimizing a weighted sum of these robust costs, general conformity to dose prescription and dose-gradient prescription is achieved while encouraging prescription violations to follow a Laplace distribution. In contrast, conventional quadratic objectives are associated with a Gaussian distribution of violations, which is less forgiving to large violations of prescription than the Laplace distribution. As a result, the proposed objective E tot sparse improves
Dose-shaping using targeted sparse optimization.
Sayre, George A; Ruan, Dan
2013-07-01
Dose volume histograms (DVHs) are common tools in radiation therapy treatment planning to characterize plan quality. As statistical metrics, DVHs provide a compact summary of the underlying plan at the cost of losing spatial information: the same or similar dose-volume histograms can arise from substantially different spatial dose maps. This is exactly the reason why physicians and physicists scrutinize dose maps even after they satisfy all DVH endpoints numerically. However, up to this point, little has been done to control spatial phenomena, such as the spatial distribution of hot spots, which has significant clinical implications. To this end, the authors propose a novel objective function that enables a more direct tradeoff between target coverage, organ-sparing, and planning target volume (PTV) homogeneity, and presents our findings from four prostate cases, a pancreas case, and a head-and-neck case to illustrate the advantages and general applicability of our method. In designing the energy minimization objective (E tot (sparse)), the authors utilized the following robust cost functions: (1) an asymmetric linear well function to allow differential penalties for underdose, relaxation of prescription dose, and overdose in the PTV; (2) a two-piece linear function to heavily penalize high dose and mildly penalize low and intermediate dose in organs-at risk (OARs); and (3) a total variation energy, i.e., the L1 norm applied to the first-order approximation of the dose gradient in the PTV. By minimizing a weighted sum of these robust costs, general conformity to dose prescription and dose-gradient prescription is achieved while encouraging prescription violations to follow a Laplace distribution. In contrast, conventional quadratic objectives are associated with a Gaussian distribution of violations, which is less forgiving to large violations of prescription than the Laplace distribution. As a result, the proposed objective E tot (sparse) improves tradeoff between
Signal Sampling for Efficient Sparse Representation of Resting State FMRI Data
Ge, Bao; Makkie, Milad; Wang, Jin; Zhao, Shijie; Jiang, Xi; Li, Xiang; Lv, Jinglei; Zhang, Shu; Zhang, Wei; Han, Junwei; Guo, Lei; Liu, Tianming
2015-01-01
As the size of brain imaging data such as fMRI grows explosively, it provides us with unprecedented and abundant information about the brain. How to reduce the size of fMRI data but not lose much information becomes a more and more pressing issue. Recent literature studies tried to deal with it by dictionary learning and sparse representation methods, however, their computation complexities are still high, which hampers the wider application of sparse representation method to large scale fMRI datasets. To effectively address this problem, this work proposes to represent resting state fMRI (rs-fMRI) signals of a whole brain via a statistical sampling based sparse representation. First we sampled the whole brain’s signals via different sampling methods, then the sampled signals were aggregate into an input data matrix to learn a dictionary, finally this dictionary was used to sparsely represent the whole brain’s signals and identify the resting state networks. Comparative experiments demonstrate that the proposed signal sampling framework can speed-up by ten times in reconstructing concurrent brain networks without losing much information. The experiments on the 1000 Functional Connectomes Project further demonstrate its effectiveness and superiority. PMID:26646924
Feature based omnidirectional sparse visual path following
Goedemé, Toon; Tuytelaars, Tinne; Van Gool, Luc; Vanacker, Gerolf; Nuttin, Marnix
2005-01-01
Goedemé T., Tuytelaars T., Van Gool L., Vanacker G., Nuttin M., ''Feature based omnidirectional sparse visual path following'', Proceedings IEEE/RSJ international conference on intelligent robots and systems - IROS2005, pp. 1003-1008, August 2-6, 2005, Edmonton, Alberta, Canada.
A Non-static Data Layout Enhancing Parallelism and Vectorization in Sparse Grid Algorithms
Buse, Gerrit; Pfluger, Dirk; Murarasu, Alin; Jacob, Riko
2012-01-01
performance and facilitate the use of vector registers for our sparse grid benchmark problem hierarchization. Based on the compact data structure proposed for regular sparse grids in [2], we developed a new algorithm that outperforms existing implementations
New methods for sampling sparse populations
Anna Ringvall
2007-01-01
To improve surveys of sparse objects, methods that use auxiliary information have been suggested. Guided transect sampling uses prior information, e.g., from aerial photographs, for the layout of survey strips. Instead of being laid out straight, the strips will wind between potentially more interesting areas. 3P sampling (probability proportional to prediction) uses...
Balanced and sparse Tamo-Barg codes
Halbawi, Wael; Duursma, Iwan; Dau, Hoang; Hassibi, Babak
2017-01-01
We construct balanced and sparse generator matrices for Tamo and Barg's Locally Recoverable Codes (LRCs). More specifically, for a cyclic Tamo-Barg code of length n, dimension k and locality r, we show how to deterministically construct a generator matrix where the number of nonzeros in any two columns differs by at most one, and where the weight of every row is d + r - 1, where d is the minimum distance of the code. Since LRCs are designed mainly for distributed storage systems, the results presented in this work provide a computationally balanced and efficient encoding scheme for these codes. The balanced property ensures that the computational effort exerted by any storage node is essentially the same, whilst the sparse property ensures that this effort is minimal. The work presented in this paper extends a similar result previously established for Reed-Solomon (RS) codes, where it is now known that any cyclic RS code possesses a generator matrix that is balanced as described, but is sparsest, meaning that each row has d nonzeros.
Balanced and sparse Tamo-Barg codes
Halbawi, Wael
2017-08-29
We construct balanced and sparse generator matrices for Tamo and Barg\\'s Locally Recoverable Codes (LRCs). More specifically, for a cyclic Tamo-Barg code of length n, dimension k and locality r, we show how to deterministically construct a generator matrix where the number of nonzeros in any two columns differs by at most one, and where the weight of every row is d + r - 1, where d is the minimum distance of the code. Since LRCs are designed mainly for distributed storage systems, the results presented in this work provide a computationally balanced and efficient encoding scheme for these codes. The balanced property ensures that the computational effort exerted by any storage node is essentially the same, whilst the sparse property ensures that this effort is minimal. The work presented in this paper extends a similar result previously established for Reed-Solomon (RS) codes, where it is now known that any cyclic RS code possesses a generator matrix that is balanced as described, but is sparsest, meaning that each row has d nonzeros.
The application of sparse linear prediction dictionary to compressive sensing in speech signals
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YOU Hanxu
2016-04-01
Full Text Available Appling compressive sensing (CS,which theoretically guarantees that signal sampling and signal compression can be achieved simultaneously,into audio and speech signal processing is one of the most popular research topics in recent years.In this paper,K-SVD algorithm was employed to learn a sparse linear prediction dictionary regarding as the sparse basis of underlying speech signals.Compressed signals was obtained by applying random Gaussian matrix to sample original speech frames.Orthogonal matching pursuit (OMP and compressive sampling matching pursuit (CoSaMP were adopted to recovery original signals from compressed one.Numbers of experiments were carried out to investigate the impact of speech frames length,compression ratios,sparse basis and reconstruction algorithms on CS performance.Results show that sparse linear prediction dictionary can advance the performance of speech signals reconstruction compared with discrete cosine transform (DCT matrix.
Mutation rules and the evolution of sparseness and modularity in biological systems.
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Tamar Friedlander
Full Text Available Biological systems exhibit two structural features on many levels of organization: sparseness, in which only a small fraction of possible interactions between components actually occur; and modularity--the near decomposability of the system into modules with distinct functionality. Recent work suggests that modularity can evolve in a variety of circumstances, including goals that vary in time such that they share the same subgoals (modularly varying goals, or when connections are costly. Here, we studied the origin of modularity and sparseness focusing on the nature of the mutation process, rather than on connection cost or variations in the goal. We use simulations of evolution with different mutation rules. We found that commonly used sum-rule mutations, in which interactions are mutated by adding random numbers, do not lead to modularity or sparseness except for in special situations. In contrast, product-rule mutations in which interactions are mutated by multiplying by random numbers--a better model for the effects of biological mutations--led to sparseness naturally. When the goals of evolution are modular, in the sense that specific groups of inputs affect specific groups of outputs, product-rule mutations also lead to modular structure; sum-rule mutations do not. Product-rule mutations generate sparseness and modularity because they tend to reduce interactions, and to keep small interaction terms small.
Natural image sequences constrain dynamic receptive fields and imply a sparse code.
Häusler, Chris; Susemihl, Alex; Nawrot, Martin P
2013-11-06
In their natural environment, animals experience a complex and dynamic visual scenery. Under such natural stimulus conditions, neurons in the visual cortex employ a spatially and temporally sparse code. For the input scenario of natural still images, previous work demonstrated that unsupervised feature learning combined with the constraint of sparse coding can predict physiologically measured receptive fields of simple cells in the primary visual cortex. This convincingly indicated that the mammalian visual system is adapted to the natural spatial input statistics. Here, we extend this approach to the time domain in order to predict dynamic receptive fields that can account for both spatial and temporal sparse activation in biological neurons. We rely on temporal restricted Boltzmann machines and suggest a novel temporal autoencoding training procedure. When tested on a dynamic multi-variate benchmark dataset this method outperformed existing models of this class. Learning features on a large dataset of natural movies allowed us to model spatio-temporal receptive fields for single neurons. They resemble temporally smooth transformations of previously obtained static receptive fields and are thus consistent with existing theories. A neuronal spike response model demonstrates how the dynamic receptive field facilitates temporal and population sparseness. We discuss the potential mechanisms and benefits of a spatially and temporally sparse representation of natural visual input. Copyright © 2013 The Authors. Published by Elsevier B.V. All rights reserved.
The Roles of Sparse Direct Methods in Large-scale Simulations
Energy Technology Data Exchange (ETDEWEB)
Li, Xiaoye S.; Gao, Weiguo; Husbands, Parry J.R.; Yang, Chao; Ng, Esmond G.
2005-06-27
Sparse systems of linear equations and eigen-equations arise at the heart of many large-scale, vital simulations in DOE. Examples include the Accelerator Science and Technology SciDAC (Omega3P code, electromagnetic problem), the Center for Extended Magnetohydrodynamic Modeling SciDAC(NIMROD and M3D-C1 codes, fusion plasma simulation). The Terascale Optimal PDE Simulations (TOPS)is providing high-performance sparse direct solvers, which have had significant impacts on these applications. Over the past several years, we have been working closely with the other SciDAC teams to solve their large, sparse matrix problems arising from discretization of the partial differential equations. Most of these systems are very ill-conditioned, resulting in extremely poor convergence deployed our direct methods techniques in these applications, which achieved significant scientific results as well as performance gains. These successes were made possible through the SciDAC model of computer scientists and application scientists working together to take full advantage of terascale computing systems and new algorithms research.
The Roles of Sparse Direct Methods in Large-scale Simulations
International Nuclear Information System (INIS)
Li, Xiaoye S.; Gao, Weiguo; Husbands, Parry J.R.; Yang, Chao; Ng, Esmond G.
2005-01-01
Sparse systems of linear equations and eigen-equations arise at the heart of many large-scale, vital simulations in DOE. Examples include the Accelerator Science and Technology SciDAC (Omega3P code, electromagnetic problem), the Center for Extended Magnetohydrodynamic Modeling SciDAC(NIMROD and M3D-C1 codes, fusion plasma simulation). The Terascale Optimal PDE Simulations (TOPS)is providing high-performance sparse direct solvers, which have had significant impacts on these applications. Over the past several years, we have been working closely with the other SciDAC teams to solve their large, sparse matrix problems arising from discretization of the partial differential equations. Most of these systems are very ill-conditioned, resulting in extremely poor convergence deployed our direct methods techniques in these applications, which achieved significant scientific results as well as performance gains. These successes were made possible through the SciDAC model of computer scientists and application scientists working together to take full advantage of terascale computing systems and new algorithms research
Sparse logistic principal components analysis for binary data
Lee, Seokho
2010-09-01
We develop a new principal components analysis (PCA) type dimension reduction method for binary data. Different from the standard PCA which is defined on the observed data, the proposed PCA is defined on the logit transform of the success probabilities of the binary observations. Sparsity is introduced to the principal component (PC) loading vectors for enhanced interpretability and more stable extraction of the principal components. Our sparse PCA is formulated as solving an optimization problem with a criterion function motivated from a penalized Bernoulli likelihood. A Majorization-Minimization algorithm is developed to efficiently solve the optimization problem. The effectiveness of the proposed sparse logistic PCA method is illustrated by application to a single nucleotide polymorphism data set and a simulation study. © Institute ol Mathematical Statistics, 2010.
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Pilipchuk, L. A., E-mail: pilipchik@bsu.by [Belarussian State University, 220030 Minsk, 4, Nezavisimosti avenue, Republic of Belarus (Belarus); Pilipchuk, A. S., E-mail: an.pilipchuk@gmail.com [The Natural Resources and Environmental Protestion Ministry of the Republic of Belarus, 220004 Minsk, 10 Kollektornaya Street, Republic of Belarus (Belarus)
2015-11-30
In this paper we propose the theory of decomposition, methods, technologies, applications and implementation in Wol-fram Mathematica for the constructing the solutions of the sparse linear systems. One of the applications is the Sensor Location Problem for the symmetric graph in the case when split ratios of some arc flows can be zeros. The objective of that application is to minimize the number of sensors that are assigned to the nodes. We obtain a sparse system of linear algebraic equations and research its matrix rank. Sparse systems of these types appear in generalized network flow programming problems in the form of restrictions and can be characterized as systems with a large sparse sub-matrix representing the embedded network structure.
International Nuclear Information System (INIS)
Pilipchuk, L. A.; Pilipchuk, A. S.
2015-01-01
In this paper we propose the theory of decomposition, methods, technologies, applications and implementation in Wol-fram Mathematica for the constructing the solutions of the sparse linear systems. One of the applications is the Sensor Location Problem for the symmetric graph in the case when split ratios of some arc flows can be zeros. The objective of that application is to minimize the number of sensors that are assigned to the nodes. We obtain a sparse system of linear algebraic equations and research its matrix rank. Sparse systems of these types appear in generalized network flow programming problems in the form of restrictions and can be characterized as systems with a large sparse sub-matrix representing the embedded network structure
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A. G. Koppad
2017-10-01
Full Text Available The study was conducted in Uttara Kannada districts during the year 2012–2014. The study area lies between 13.92° N to 15.52° N latitude and 74.08° E to 75.09° E longitude with an area of 10,215 km2. The Indian satellite IRS P6 LISS-III imageries were used to classify the land use land cover classes with ground truth data collected with GPS through supervised classification in ERDAS software. The land use and land cover classes identified were dense forest, horticulture plantation, sparse forest, forest plantation, open land and agriculture land. The dense forest covered an area of 63.32 % (6468.70 sq km followed by agriculture 12.88 % (1315.31 sq. km, sparse forest 10.59 % (1081.37 sq. km, open land 6.09 % (622.37 sq. km, horticulture plantation and least was forest plantation (1.07 %. Settlement, stony land and water body together cover about 4.26 percent of the area. The study indicated that the aspect and altitude influenced the forest types and vegetation pattern. The NDVI map was prepared which indicated that healthy vegetation is represented by high NDVI values between 0.1 and 1. The non- vegetated features such as water bodies, settlement, and stony land indicated less than 0.1 values. The decrease in forest area in some places was due to anthropogenic activities. The thematic map of land use land cover classes was prepared using Arc GIS Software.
Multi-Layer Sparse Representation for Weighted LBP-Patches Based Facial Expression Recognition
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Qi Jia
2015-03-01
Full Text Available In this paper, a novel facial expression recognition method based on sparse representation is proposed. Most contemporary facial expression recognition systems suffer from limited ability to handle image nuisances such as low resolution and noise. Especially for low intensity expression, most of the existing training methods have quite low recognition rates. Motivated by sparse representation, the problem can be solved by finding sparse coefficients of the test image by the whole training set. Deriving an effective facial representation from original face images is a vital step for successful facial expression recognition. We evaluate facial representation based on weighted local binary patterns, and Fisher separation criterion is used to calculate the weighs of patches. A multi-layer sparse representation framework is proposed for multi-intensity facial expression recognition, especially for low-intensity expressions and noisy expressions in reality, which is a critical problem but seldom addressed in the existing works. To this end, several experiments based on low-resolution and multi-intensity expressions are carried out. Promising results on publicly available databases demonstrate the potential of the proposed approach.
Face recognition via sparse representation of SIFT feature on hexagonal-sampling image
Zhang, Daming; Zhang, Xueyong; Li, Lu; Liu, Huayong
2018-04-01
This paper investigates a face recognition approach based on Scale Invariant Feature Transform (SIFT) feature and sparse representation. The approach takes advantage of SIFT which is local feature other than holistic feature in classical Sparse Representation based Classification (SRC) algorithm and possesses strong robustness to expression, pose and illumination variations. Since hexagonal image has more inherit merits than square image to make recognition process more efficient, we extract SIFT keypoint in hexagonal-sampling image. Instead of matching SIFT feature, firstly the sparse representation of each SIFT keypoint is given according the constructed dictionary; secondly these sparse vectors are quantized according dictionary; finally each face image is represented by a histogram and these so-called Bag-of-Words vectors are classified by SVM. Due to use of local feature, the proposed method achieves better result even when the number of training sample is small. In the experiments, the proposed method gave higher face recognition rather than other methods in ORL and Yale B face databases; also, the effectiveness of the hexagonal-sampling in the proposed method is verified.
Low-rank sparse learning for robust visual tracking
Zhang, Tianzhu; Ghanem, Bernard; Liu, Si; Ahuja, Narendra
2012-01-01
In this paper, we propose a new particle-filter based tracking algorithm that exploits the relationship between particles (candidate targets). By representing particles as sparse linear combinations of dictionary templates, this algorithm
An algorithm for 3D target scatterer feature estimation from sparse SAR apertures
Jackson, Julie Ann; Moses, Randolph L.
2009-05-01
We present an algorithm for extracting 3D canonical scattering features from complex targets observed over sparse 3D SAR apertures. The algorithm begins with complex phase history data and ends with a set of geometrical features describing the scene. The algorithm provides a pragmatic approach to initialization of a nonlinear feature estimation scheme, using regularization methods to deconvolve the point spread function and obtain sparse 3D images. Regions of high energy are detected in the sparse images, providing location initializations for scattering center estimates. A single canonical scattering feature, corresponding to a geometric shape primitive, is fit to each region via nonlinear optimization of fit error between the regularized data and parametric canonical scattering models. Results of the algorithm are presented using 3D scattering prediction data of a simple scene for both a densely-sampled and a sparsely-sampled SAR measurement aperture.
An Improved Information Hiding Method Based on Sparse Representation
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Minghai Yao
2015-01-01
Full Text Available A novel biometric authentication information hiding method based on the sparse representation is proposed for enhancing the security of biometric information transmitted in the network. In order to make good use of abundant information of the cover image, the sparse representation method is adopted to exploit the correlation between the cover and biometric images. Thus, the biometric image is divided into two parts. The first part is the reconstructed image, and the other part is the residual image. The biometric authentication image cannot be restored by any one part. The residual image and sparse representation coefficients are embedded into the cover image. Then, for the sake of causing much less attention of attackers, the visual attention mechanism is employed to select embedding location and embedding sequence of secret information. Finally, the reversible watermarking algorithm based on histogram is utilized for embedding the secret information. For verifying the validity of the algorithm, the PolyU multispectral palmprint and the CASIA iris databases are used as biometric information. The experimental results show that the proposed method exhibits good security, invisibility, and high capacity.
Sparse reconstruction by means of the standard Tikhonov regularization
International Nuclear Information System (INIS)
Lu Shuai; Pereverzev, Sergei V
2008-01-01
It is a common belief that Tikhonov scheme with || · ||L 2 -penalty fails in sparse reconstruction. We are going to show, however, that this standard regularization can help if the stability measured in L 1 -norm will be properly taken into account in the choice of the regularization parameter. The crucial point is that now a stability bound may depend on the bases with respect to which the solution of the problem is assumed to be sparse. We discuss how such a stability can be estimated numerically and present the results of computational experiments giving the evidence of the reliability of our approach.
Sparse modeling applied to patient identification for safety in medical physics applications
Lewkowitz, Stephanie
Every scheduled treatment at a radiation therapy clinic involves a series of safety protocol to ensure the utmost patient care. Despite safety protocol, on a rare occasion an entirely preventable medical event, an accident, may occur. Delivering a treatment plan to the wrong patient is preventable, yet still is a clinically documented error. This research describes a computational method to identify patients with a novel machine learning technique to combat misadministration. The patient identification program stores face and fingerprint data for each patient. New, unlabeled data from those patients are categorized according to the library. The categorization of data by this face-fingerprint detector is accomplished with new machine learning algorithms based on Sparse Modeling that have already begun transforming the foundation of Computer Vision. Previous patient recognition software required special subroutines for faces and different tailored subroutines for fingerprints. In this research, the same exact model is used for both fingerprints and faces, without any additional subroutines and even without adjusting the two hyperparameters. Sparse modeling is a powerful tool, already shown utility in the areas of super-resolution, denoising, inpainting, demosaicing, and sub-nyquist sampling, i.e. compressed sensing. Sparse Modeling is possible because natural images are inherently sparse in some bases, due to their inherent structure. This research chooses datasets of face and fingerprint images to test the patient identification model. The model stores the images of each dataset as a basis (library). One image at a time is removed from the library, and is classified by a sparse code in terms of the remaining library. The Locally Competitive Algorithm, a truly neural inspired Artificial Neural Network, solves the computationally difficult task of finding the sparse code for the test image. The components of the sparse representation vector are summed by ℓ1 pooling
Sparse logistic principal components analysis for binary data
Lee, Seokho; Huang, Jianhua Z.; Hu, Jianhua
2010-01-01
with a criterion function motivated from a penalized Bernoulli likelihood. A Majorization-Minimization algorithm is developed to efficiently solve the optimization problem. The effectiveness of the proposed sparse logistic PCA method is illustrated
Sparse-View Ultrasound Diffraction Tomography Using Compressed Sensing with Nonuniform FFT
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Shaoyan Hua
2014-01-01
Full Text Available Accurate reconstruction of the object from sparse-view sampling data is an appealing issue for ultrasound diffraction tomography (UDT. In this paper, we present a reconstruction method based on compressed sensing framework for sparse-view UDT. Due to the piecewise uniform characteristics of anatomy structures, the total variation is introduced into the cost function to find a more faithful sparse representation of the object. The inverse problem of UDT is iteratively resolved by conjugate gradient with nonuniform fast Fourier transform. Simulation results show the effectiveness of the proposed method that the main characteristics of the object can be properly presented with only 16 views. Compared to interpolation and multiband method, the proposed method can provide higher resolution and lower artifacts with the same view number. The robustness to noise and the computation complexity are also discussed.
On Sparse Multi-Task Gaussian Process Priors for Music Preference Learning
DEFF Research Database (Denmark)
Nielsen, Jens Brehm; Jensen, Bjørn Sand; Larsen, Jan
In this paper we study pairwise preference learning in a music setting with multitask Gaussian processes and examine the effect of sparsity in the input space as well as in the actual judgments. To introduce sparsity in the inputs, we extend a classic pairwise likelihood model to support sparse...... simulation shows the performance on a real-world music preference dataset which motivates and demonstrates the potential of the sparse Gaussian process formulation for pairwise likelihoods....
Linear Regression on Sparse Features for Single-Channel Speech Separation
DEFF Research Database (Denmark)
Schmidt, Mikkel N.; Olsson, Rasmus Kongsgaard
2007-01-01
In this work we address the problem of separating multiple speakers from a single microphone recording. We formulate a linear regression model for estimating each speaker based on features derived from the mixture. The employed feature representation is a sparse, non-negative encoding of the speech...... mixture in terms of pre-learned speaker-dependent dictionaries. Previous work has shown that this feature representation by itself provides some degree of separation. We show that the performance is significantly improved when regression analysis is performed on the sparse, non-negative features, both...
Tamellini, Lorenzo
2016-01-05
In this talk we discuss possible strategies to minimize the impact of the curse of dimensionality effect when building sparse-grid approximations of a multivariate function u = u(y1, ..., yN ). More precisely, we present a knapsack approach , in which we estimate the cost and the error reduction contribution of each possible component of the sparse grid, and then we choose the components with the highest error reduction /cost ratio. The estimates of the error reduction are obtained by either a mixed a-priori / a-posteriori approach, in which we first derive a theoretical bound and then tune it with some inexpensive auxiliary computations (resulting in the so-called quasi-optimal sparse grids ), or by a fully a-posteriori approach (obtaining the so-called adaptive sparse grids ). This framework is very general and can be used to build quasi-optimal/adaptive sparse grids on bounded and unbounded domains (e.g. u depending on uniform and normal random distributions for yn), using both nested and non-nested families of univariate collocation points. We present some theoretical convergence results as well as numerical results showing the efficiency of the proposed approach for the approximation of the solution of elliptic PDEs with random diffusion coefficients. In this context, to treat the case of rough permeability fields in which a sparse grid approach may not be suitable, we propose to use the sparse grids as a control variate in a Monte Carlo simulation.
Sparse Channel Estimation Including the Impact of the Transceiver Filters with Application to OFDM
DEFF Research Database (Denmark)
Barbu, Oana-Elena; Pedersen, Niels Lovmand; Manchón, Carles Navarro
2014-01-01
Traditionally, the dictionary matrices used in sparse wireless channel estimation have been based on the discrete Fourier transform, following the assumption that the channel frequency response (CFR) can be approximated as a linear combination of a small number of multipath components, each one......) and receive (demodulation) filters. Hence, the assumption of the CFR being sparse in the canonical Fourier dictionary may no longer hold. In this work, we derive a signal model and subsequently a novel dictionary matrix for sparse estimation that account for the impact of transceiver filters. Numerical...... results obtained in an OFDM transmission scenario demonstrate the superior accuracy of a sparse estimator that uses our proposed dictionary rather than the classical Fourier dictionary, and its robustness against a mismatch in the assumed transmit filter characteristics....
Sparse data structure design for wavelet-based methods
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Latu Guillaume
2011-12-01
Full Text Available This course gives an introduction to the design of efficient datatypes for adaptive wavelet-based applications. It presents some code fragments and benchmark technics useful to learn about the design of sparse data structures and adaptive algorithms. Material and practical examples are given, and they provide good introduction for anyone involved in the development of adaptive applications. An answer will be given to the question: how to implement and efficiently use the discrete wavelet transform in computer applications? A focus will be made on time-evolution problems, and use of wavelet-based scheme for adaptively solving partial differential equations (PDE. One crucial issue is that the benefits of the adaptive method in term of algorithmic cost reduction can not be wasted by overheads associated to sparse data management.
Preconditioned Inexact Newton for Nonlinear Sparse Electromagnetic Imaging
Desmal, Abdulla; Bagci, Hakan
2014-01-01
with smoothness promoting optimization/regularization schemes. However, this type of regularization schemes are known to perform poorly when applied in imagining domains with sparse content or sharp variations. In this work, an inexact Newton algorithm
Interferometric interpolation of sparse marine data
Hanafy, Sherif M.
2013-10-11
We present the theory and numerical results for interferometrically interpolating 2D and 3D marine surface seismic profiles data. For the interpolation of seismic data we use the combination of a recorded Green\\'s function and a model-based Green\\'s function for a water-layer model. Synthetic (2D and 3D) and field (2D) results show that the seismic data with sparse receiver intervals can be accurately interpolated to smaller intervals using multiples in the data. An up- and downgoing separation of both recorded and model-based Green\\'s functions can help in minimizing artefacts in a virtual shot gather. If the up- and downgoing separation is not possible, noticeable artefacts will be generated in the virtual shot gather. As a partial remedy we iteratively use a non-stationary 1D multi-channel matching filter with the interpolated data. Results suggest that a sparse marine seismic survey can yield more information about reflectors if traces are interpolated by interferometry. Comparing our results to those of f-k interpolation shows that the synthetic example gives comparable results while the field example shows better interpolation quality for the interferometric method. © 2013 European Association of Geoscientists & Engineers.
Dose-shaping using targeted sparse optimization
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Sayre, George A.; Ruan, Dan [Department of Radiation Oncology, University of California - Los Angeles School of Medicine, 200 Medical Plaza, Los Angeles, California 90095 (United States)
2013-07-15
Purpose: Dose volume histograms (DVHs) are common tools in radiation therapy treatment planning to characterize plan quality. As statistical metrics, DVHs provide a compact summary of the underlying plan at the cost of losing spatial information: the same or similar dose-volume histograms can arise from substantially different spatial dose maps. This is exactly the reason why physicians and physicists scrutinize dose maps even after they satisfy all DVH endpoints numerically. However, up to this point, little has been done to control spatial phenomena, such as the spatial distribution of hot spots, which has significant clinical implications. To this end, the authors propose a novel objective function that enables a more direct tradeoff between target coverage, organ-sparing, and planning target volume (PTV) homogeneity, and presents our findings from four prostate cases, a pancreas case, and a head-and-neck case to illustrate the advantages and general applicability of our method.Methods: In designing the energy minimization objective (E{sub tot}{sup sparse}), the authors utilized the following robust cost functions: (1) an asymmetric linear well function to allow differential penalties for underdose, relaxation of prescription dose, and overdose in the PTV; (2) a two-piece linear function to heavily penalize high dose and mildly penalize low and intermediate dose in organs-at risk (OARs); and (3) a total variation energy, i.e., the L{sub 1} norm applied to the first-order approximation of the dose gradient in the PTV. By minimizing a weighted sum of these robust costs, general conformity to dose prescription and dose-gradient prescription is achieved while encouraging prescription violations to follow a Laplace distribution. In contrast, conventional quadratic objectives are associated with a Gaussian distribution of violations, which is less forgiving to large violations of prescription than the Laplace distribution. As a result, the proposed objective E{sub tot
High Order Tensor Formulation for Convolutional Sparse Coding
Bibi, Adel Aamer; Ghanem, Bernard
2017-01-01
Convolutional sparse coding (CSC) has gained attention for its successful role as a reconstruction and a classification tool in the computer vision and machine learning community. Current CSC methods can only reconstruct singlefeature 2D images
Directory of Open Access Journals (Sweden)
Wei Xu
2018-05-01
Full Text Available Cosine-modulated filter banks play a major role in digital signal processing. Sparse FIR filter banks have lower implementation complexity than full filter banks, while keeping a good performance level. This paper presents a fast design paradigm for sparse nearly perfect-reconstruction (NPR cosine-modulated filter banks. First, an approximation function is introduced to reduce the non-convex quadratically constrained optimization problem to a linearly constrained optimization problem. Then, the desired sparse linear phase FIR prototype filter is derived through the orthogonal matching pursuit (OMP performed under the weighted l 2 norm. The simulation results demonstrate that the proposed scheme is an effective paradigm to design sparse NPR cosine-modulated filter banks.
Efficient Pseudorecursive Evaluation Schemes for Non-adaptive Sparse Grids
Buse, Gerrit
2014-01-01
In this work we propose novel algorithms for storing and evaluating sparse grid functions, operating on regular (not spatially adaptive), yet potentially dimensionally adaptive grid types. Besides regular sparse grids our approach includes truncated grids, both with and without boundary grid points. Similar to the implicit data structures proposed in Feuersänger (Dünngitterverfahren für hochdimensionale elliptische partielle Differntialgleichungen. Diploma Thesis, Institut für Numerische Simulation, Universität Bonn, 2005) and Murarasu et al. (Proceedings of the 16th ACM Symposium on Principles and Practice of Parallel Programming. Cambridge University Press, New York, 2011, pp. 25–34) we also define a bijective mapping from the multi-dimensional space of grid points to a contiguous index, such that the grid data can be stored in a simple array without overhead. Our approach is especially well-suited to exploit all levels of current commodity hardware, including cache-levels and vector extensions. Furthermore, this kind of data structure is extremely attractive for today’s real-time applications, as it gives direct access to the hierarchical structure of the grids, while outperforming other common sparse grid structures (hash maps, etc.) which do not match with modern compute platforms that well. For dimensionality d ≤ 10 we achieve good speedups on a 12 core Intel Westmere-EP NUMA platform compared to the results presented in Murarasu et al. (Proceedings of the International Conference on Computational Science—ICCS 2012. Procedia Computer Science, 2012). As we show, this also holds for the results obtained on Nvidia Fermi GPUs, for which we observe speedups over our own CPU implementation of up to 4.5 when dealing with moderate dimensionality. In high-dimensional settings, in the order of tens to hundreds of dimensions, our sparse grid evaluation kernels on the CPU outperform any other known implementation.
Noniterative MAP reconstruction using sparse matrix representations.
Cao, Guangzhi; Bouman, Charles A; Webb, Kevin J
2009-09-01
We present a method for noniterative maximum a posteriori (MAP) tomographic reconstruction which is based on the use of sparse matrix representations. Our approach is to precompute and store the inverse matrix required for MAP reconstruction. This approach has generally not been used in the past because the inverse matrix is typically large and fully populated (i.e., not sparse). In order to overcome this problem, we introduce two new ideas. The first idea is a novel theory for the lossy source coding of matrix transformations which we refer to as matrix source coding. This theory is based on a distortion metric that reflects the distortions produced in the final matrix-vector product, rather than the distortions in the coded matrix itself. The resulting algorithms are shown to require orthonormal transformations of both the measurement data and the matrix rows and columns before quantization and coding. The second idea is a method for efficiently storing and computing the required orthonormal transformations, which we call a sparse-matrix transform (SMT). The SMT is a generalization of the classical FFT in that it uses butterflies to compute an orthonormal transform; but unlike an FFT, the SMT uses the butterflies in an irregular pattern, and is numerically designed to best approximate the desired transforms. We demonstrate the potential of the noniterative MAP reconstruction with examples from optical tomography. The method requires offline computation to encode the inverse transform. However, once these offline computations are completed, the noniterative MAP algorithm is shown to reduce both storage and computation by well over two orders of magnitude, as compared to a linear iterative reconstruction methods.
On A Nonlinear Generalization of Sparse Coding and Dictionary Learning.
Xie, Yuchen; Ho, Jeffrey; Vemuri, Baba
2013-01-01
Existing dictionary learning algorithms are based on the assumption that the data are vectors in an Euclidean vector space ℝ d , and the dictionary is learned from the training data using the vector space structure of ℝ d and its Euclidean L 2 -metric. However, in many applications, features and data often originated from a Riemannian manifold that does not support a global linear (vector space) structure. Furthermore, the extrinsic viewpoint of existing dictionary learning algorithms becomes inappropriate for modeling and incorporating the intrinsic geometry of the manifold that is potentially important and critical to the application. This paper proposes a novel framework for sparse coding and dictionary learning for data on a Riemannian manifold, and it shows that the existing sparse coding and dictionary learning methods can be considered as special (Euclidean) cases of the more general framework proposed here. We show that both the dictionary and sparse coding can be effectively computed for several important classes of Riemannian manifolds, and we validate the proposed method using two well-known classification problems in computer vision and medical imaging analysis.
A Low Delay and Fast Converging Improved Proportionate Algorithm for Sparse System Identification
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Benesty Jacob
2007-01-01
Full Text Available A sparse system identification algorithm for network echo cancellation is presented. This new approach exploits both the fast convergence of the improved proportionate normalized least mean square (IPNLMS algorithm and the efficient implementation of the multidelay adaptive filtering (MDF algorithm inheriting the beneficial properties of both. The proposed IPMDF algorithm is evaluated using impulse responses with various degrees of sparseness. Simulation results are also presented for both speech and white Gaussian noise input sequences. It has been shown that the IPMDF algorithm outperforms the MDF and IPNLMS algorithms for both sparse and dispersive echo path impulse responses. Computational complexity of the proposed algorithm is also discussed.
Robust visual tracking via multi-task sparse learning
Zhang, Tianzhu; Ghanem, Bernard; Liu, Si; Ahuja, Narendra
2012-01-01
In this paper, we formulate object tracking in a particle filter framework as a multi-task sparse learning problem, which we denote as Multi-Task Tracking (MTT). Since we model particles as linear combinations of dictionary templates
Zhang, Shang; Dong, Yuhan; Fu, Hongyan; Huang, Shao-Lun; Zhang, Lin
2018-02-22
The miniaturization of spectrometer can broaden the application area of spectrometry, which has huge academic and industrial value. Among various miniaturization approaches, filter-based miniaturization is a promising implementation by utilizing broadband filters with distinct transmission functions. Mathematically, filter-based spectral reconstruction can be modeled as solving a system of linear equations. In this paper, we propose an algorithm of spectral reconstruction based on sparse optimization and dictionary learning. To verify the feasibility of the reconstruction algorithm, we design and implement a simple prototype of a filter-based miniature spectrometer. The experimental results demonstrate that sparse optimization is well applicable to spectral reconstruction whether the spectra are directly sparse or not. As for the non-directly sparse spectra, their sparsity can be enhanced by dictionary learning. In conclusion, the proposed approach has a bright application prospect in fabricating a practical miniature spectrometer.
Directory of Open Access Journals (Sweden)
Yunyi Li
2017-12-01
Full Text Available Both L 1 / 2 and L 2 / 3 are two typical non-convex regularizations of L p ( 0 < p < 1 , which can be employed to obtain a sparser solution than the L 1 regularization. Recently, the multiple-state sparse transformation strategy has been developed to exploit the sparsity in L 1 regularization for sparse signal recovery, which combines the iterative reweighted algorithms. To further exploit the sparse structure of signal and image, this paper adopts multiple dictionary sparse transform strategies for the two typical cases p ∈ { 1 / 2 , 2 / 3 } based on an iterative L p thresholding algorithm and then proposes a sparse adaptive iterative-weighted L p thresholding algorithm (SAITA. Moreover, a simple yet effective regularization parameter is proposed to weight each sub-dictionary-based L p regularizer. Simulation results have shown that the proposed SAITA not only performs better than the corresponding L 1 algorithms but can also obtain a better recovery performance and achieve faster convergence than the conventional single-dictionary sparse transform-based L p case. Moreover, we conduct some applications about sparse image recovery and obtain good results by comparison with relative work.
Shape prior modeling using sparse representation and online dictionary learning.
Zhang, Shaoting; Zhan, Yiqiang; Zhou, Yan; Uzunbas, Mustafa; Metaxas, Dimitris N
2012-01-01
The recently proposed sparse shape composition (SSC) opens a new avenue for shape prior modeling. Instead of assuming any parametric model of shape statistics, SSC incorporates shape priors on-the-fly by approximating a shape instance (usually derived from appearance cues) by a sparse combination of shapes in a training repository. Theoretically, one can increase the modeling capability of SSC by including as many training shapes in the repository. However, this strategy confronts two limitations in practice. First, since SSC involves an iterative sparse optimization at run-time, the more shape instances contained in the repository, the less run-time efficiency SSC has. Therefore, a compact and informative shape dictionary is preferred to a large shape repository. Second, in medical imaging applications, training shapes seldom come in one batch. It is very time consuming and sometimes infeasible to reconstruct the shape dictionary every time new training shapes appear. In this paper, we propose an online learning method to address these two limitations. Our method starts from constructing an initial shape dictionary using the K-SVD algorithm. When new training shapes come, instead of re-constructing the dictionary from the ground up, we update the existing one using a block-coordinates descent approach. Using the dynamically updated dictionary, sparse shape composition can be gracefully scaled up to model shape priors from a large number of training shapes without sacrificing run-time efficiency. Our method is validated on lung localization in X-Ray and cardiac segmentation in MRI time series. Compared to the original SSC, it shows comparable performance while being significantly more efficient.
Mapping visual stimuli to perceptual decisions via sparse decoding of mesoscopic neural activity.
Sajda, Paul
2010-01-01
In this talk I will describe our work investigating sparse decoding of neural activity, given a realistic mapping of the visual scene to neuronal spike trains generated by a model of primary visual cortex (V1). We use a linear decoder which imposes sparsity via an L1 norm. The decoder can be viewed as a decoding neuron (linear summation followed by a sigmoidal nonlinearity) in which there are relatively few non-zero synaptic weights. We find: (1) the best decoding performance is for a representation that is sparse in both space and time, (2) decoding of a temporal code results in better performance than a rate code and is also a better fit to the psychophysical data, (3) the number of neurons required for decoding increases monotonically as signal-to-noise in the stimulus decreases, with as little as 1% of the neurons required for decoding at the highest signal-to-noise levels, and (4) sparse decoding results in a more accurate decoding of the stimulus and is a better fit to psychophysical performance than a distributed decoding, for example one imposed by an L2 norm. We conclude that sparse coding is well-justified from a decoding perspective in that it results in a minimum number of neurons and maximum accuracy when sparse representations can be decoded from the neural dynamics.
Directory of Open Access Journals (Sweden)
Fan Yang
2015-07-01
Full Text Available Normally, polarimetric SAR classification is a high-dimensional nonlinear mapping problem. In the realm of pattern recognition, sparse representation is a very efficacious and powerful approach. As classical descriptors of polarimetric SAR, covariance and coherency matrices are Hermitian semidefinite and form a Riemannian manifold. Conventional Euclidean metrics are not suitable for a Riemannian manifold, and hence, normal sparse representation classification cannot be applied to polarimetric SAR directly. This paper proposes a new land cover classification approach for polarimetric SAR. There are two principal novelties in this paper. First, a Stein kernel on a Riemannian manifold instead of Euclidean metrics, combined with sparse representation, is employed for polarimetric SAR land cover classification. This approach is named Stein-sparse representation-based classification (SRC. Second, using simultaneous sparse representation and reasonable assumptions of the correlation of representation among different frequency bands, Stein-SRC is generalized to simultaneous Stein-SRC for multi-frequency polarimetric SAR classification. These classifiers are assessed using polarimetric SAR images from the Airborne Synthetic Aperture Radar (AIRSAR sensor of the Jet Propulsion Laboratory (JPL and the Electromagnetics Institute Synthetic Aperture Radar (EMISAR sensor of the Technical University of Denmark (DTU. Experiments on single-band and multi-band data both show that these approaches acquire more accurate classification results in comparison to many conventional and advanced classifiers.
An Improved Sparse Representation over Learned Dictionary Method for Seizure Detection.
Li, Junhui; Zhou, Weidong; Yuan, Shasha; Zhang, Yanli; Li, Chengcheng; Wu, Qi
2016-02-01
Automatic seizure detection has played an important role in the monitoring, diagnosis and treatment of epilepsy. In this paper, a patient specific method is proposed for seizure detection in the long-term intracranial electroencephalogram (EEG) recordings. This seizure detection method is based on sparse representation with online dictionary learning and elastic net constraint. The online learned dictionary could sparsely represent the testing samples more accurately, and the elastic net constraint which combines the 11-norm and 12-norm not only makes the coefficients sparse but also avoids over-fitting problem. First, the EEG signals are preprocessed using wavelet filtering and differential filtering, and the kernel function is applied to make the samples closer to linearly separable. Then the dictionaries of seizure and nonseizure are respectively learned from original ictal and interictal training samples with online dictionary optimization algorithm to compose the training dictionary. After that, the test samples are sparsely coded over the learned dictionary and the residuals associated with ictal and interictal sub-dictionary are calculated, respectively. Eventually, the test samples are classified as two distinct categories, seizure or nonseizure, by comparing the reconstructed residuals. The average segment-based sensitivity of 95.45%, specificity of 99.08%, and event-based sensitivity of 94.44% with false detection rate of 0.23/h and average latency of -5.14 s have been achieved with our proposed method.
Sparse canonical correlation analysis: new formulation and algorithm.
Chu, Delin; Liao, Li-Zhi; Ng, Michael K; Zhang, Xiaowei
2013-12-01
In this paper, we study canonical correlation analysis (CCA), which is a powerful tool in multivariate data analysis for finding the correlation between two sets of multidimensional variables. The main contributions of the paper are: 1) to reveal the equivalent relationship between a recursive formula and a trace formula for the multiple CCA problem, 2) to obtain the explicit characterization for all solutions of the multiple CCA problem even when the corresponding covariance matrices are singular, 3) to develop a new sparse CCA algorithm, and 4) to establish the equivalent relationship between the uncorrelated linear discriminant analysis and the CCA problem. We test several simulated and real-world datasets in gene classification and cross-language document retrieval to demonstrate the effectiveness of the proposed algorithm. The performance of the proposed method is competitive with the state-of-the-art sparse CCA algorithms.
System and method for acquiring and inverting sparse-frequency data
Alkhalifah, Tariq Ali
2017-01-01
A method of imaging an object includes generating a plurality of mono-frequency waveforms and applying the plurality of mono-frequency waveforms to the object to be modeled. In addition, sparse mono-frequency data is recorded in response to the plurality of mono-frequency waveforms applied to the object to be modeled. The sparse mono-frequency data is cross-correlated with one or more source functions each having a frequency approximately equal to each of the plurality of mono-frequency waveforms to obtain monochromatic frequency data. The monochromatic frequency data is utilized in an inversion to converge a model to a minimum value.
System and method for acquiring and inverting sparse-frequency data
Alkhalifah, Tariq Ali
2017-11-30
A method of imaging an object includes generating a plurality of mono-frequency waveforms and applying the plurality of mono-frequency waveforms to the object to be modeled. In addition, sparse mono-frequency data is recorded in response to the plurality of mono-frequency waveforms applied to the object to be modeled. The sparse mono-frequency data is cross-correlated with one or more source functions each having a frequency approximately equal to each of the plurality of mono-frequency waveforms to obtain monochromatic frequency data. The monochromatic frequency data is utilized in an inversion to converge a model to a minimum value.
Directory of Open Access Journals (Sweden)
Bin He
2015-08-01
Full Text Available Since the late 1970s, the Chinese government has initiated ecological restoration programs in the Three North Shelter Forest System Project (TNSFSP area. Whether accelerated climate change will help or hinder these efforts is still poorly understood. Using the updated and extended AVHRR NDVI3g dataset from 1982 to 2011 and corresponding climatic data, we investigated vegetation variations in response to climate change. The results showed that the overall state of vegetation in the study region has improved over the past three decades. Vegetation cover significantly decreased in 23.1% and significantly increased in 21.8% of the study area. An increase in all three main vegetation types (forest, grassland, and cropland was observed, but the trend was only statistically significant in cropland. In addition, bare and sparsely vegetated areas, mainly located in the western part of the study area, have significantly expanded since the early 2000s. A moisture condition analysis indicated that the study area experienced significant climate variations, with warm-wet conditions in the western region and warm-dry conditions in the eastern region. Correlation analysis showed that variations in the Normalized Difference Vegetation Index (NDVI were positively correlated with precipitation and negatively correlated with temperature. Ultimately, climate change influenced vegetation growth by controlling the availability of soil moisture. Further investigation suggested that the positive impacts of precipitation on NDVI have weakened in the study region, whereas the negative impacts from temperature have been enhanced in the eastern study area. However, over recent years, the negative temperature impacts have been converted to positive impacts in the western region. Considering the variations in the relationship between NDVI and climatic variables, the warm–dry climate in the eastern region is likely harmful to vegetation growth, whereas the warm
Dynamic Representations of Sparse Graphs
DEFF Research Database (Denmark)
Brodal, Gerth Stølting; Fagerberg, Rolf
1999-01-01
We present a linear space data structure for maintaining graphs with bounded arboricity—a large class of sparse graphs containing e.g. planar graphs and graphs of bounded treewidth—under edge insertions, edge deletions, and adjacency queries. The data structure supports adjacency queries in worst...... case O(c) time, and edge insertions and edge deletions in amortized O(1) and O(c+log n) time, respectively, where n is the number of nodes in the graph, and c is the bound on the arboricity....
Recursive nearest neighbor search in a sparse and multiscale domain for comparing audio signals
DEFF Research Database (Denmark)
Sturm, Bob L.; Daudet, Laurent
2011-01-01
We investigate recursive nearest neighbor search in a sparse domain at the scale of audio signals. Essentially, to approximate the cosine distance between the signals we make pairwise comparisons between the elements of localized sparse models built from large and redundant multiscale dictionaries...
Nonuniform Sparse Data Clustering Cascade Algorithm Based on Dynamic Cumulative Entropy
Directory of Open Access Journals (Sweden)
Ning Li
2016-01-01
Full Text Available A small amount of prior knowledge and randomly chosen initial cluster centers have a direct impact on the accuracy of the performance of iterative clustering algorithm. In this paper we propose a new algorithm to compute initial cluster centers for k-means clustering and the best number of the clusters with little prior knowledge and optimize clustering result. It constructs the Euclidean distance control factor based on aggregation density sparse degree to select the initial cluster center of nonuniform sparse data and obtains initial data clusters by multidimensional diffusion density distribution. Multiobjective clustering approach based on dynamic cumulative entropy is adopted to optimize the initial data clusters and the best number of the clusters. The experimental results show that the newly proposed algorithm has good performance to obtain the initial cluster centers for the k-means algorithm and it effectively improves the clustering accuracy of nonuniform sparse data by about 5%.
2D sparse array transducer optimization for 3D ultrasound imaging
International Nuclear Information System (INIS)
Choi, Jae Hoon; Park, Kwan Kyu
2014-01-01
A 3D ultrasound image is desired in many medical examinations. However, the implementation of a 2D array, which is needed for a 3D image, is challenging with respect to fabrication, interconnection and cabling. A 2D sparse array, which needs fewer elements than a dense array, is a realistic way to achieve 3D images. Because the number of ways the elements can be placed in an array is extremely large, a method for optimizing the array configuration is needed. Previous research placed the target point far from the transducer array, making it impossible to optimize the array in the operating range. In our study, we focused on optimizing a 2D sparse array transducer for 3D imaging by using a simulated annealing method. We compared the far-field optimization method with the near-field optimization method by analyzing a point-spread function (PSF). The resolution of the optimized sparse array is comparable to that of the dense array.
Sparse and smooth canonical correlation analysis through rank-1 matrix approximation
Aïssa-El-Bey, Abdeldjalil; Seghouane, Abd-Krim
2017-12-01
Canonical correlation analysis (CCA) is a well-known technique used to characterize the relationship between two sets of multidimensional variables by finding linear combinations of variables with maximal correlation. Sparse CCA and smooth or regularized CCA are two widely used variants of CCA because of the improved interpretability of the former and the better performance of the later. So far, the cross-matrix product of the two sets of multidimensional variables has been widely used for the derivation of these variants. In this paper, two new algorithms for sparse CCA and smooth CCA are proposed. These algorithms differ from the existing ones in their derivation which is based on penalized rank-1 matrix approximation and the orthogonal projectors onto the space spanned by the two sets of multidimensional variables instead of the simple cross-matrix product. The performance and effectiveness of the proposed algorithms are tested on simulated experiments. On these results, it can be observed that they outperform the state of the art sparse CCA algorithms.
He, Xingyu; Tong, Ningning; Hu, Xiaowei
2018-01-01
Compressive sensing has been successfully applied to inverse synthetic aperture radar (ISAR) imaging of moving targets. By exploiting the block sparse structure of the target image, sparse solution for multiple measurement vectors (MMV) can be applied in ISAR imaging and a substantial performance improvement can be achieved. As an effective sparse recovery method, sparse Bayesian learning (SBL) for MMV involves a matrix inverse at each iteration. Its associated computational complexity grows significantly with the problem size. To address this problem, we develop a fast inverse-free (IF) SBL method for MMV. A relaxed evidence lower bound (ELBO), which is computationally more amiable than the traditional ELBO used by SBL, is obtained by invoking fundamental property for smooth functions. A variational expectation-maximization scheme is then employed to maximize the relaxed ELBO, and a computationally efficient IF-MSBL algorithm is proposed. Numerical results based on simulated and real data show that the proposed method can reconstruct row sparse signal accurately and obtain clear superresolution ISAR images. Moreover, the running time and computational complexity are reduced to a great extent compared with traditional SBL methods.
Structure-aware Local Sparse Coding for Visual Tracking
Qi, Yuankai; Qin, Lei; Zhang, Jian; Zhang, Shengping; Huang, Qingming; Yang, Ming-Hsuan
2018-01-01
with the corresponding local regions of the target templates that are the most similar from the global view. Thus, a more precise and discriminative sparse representation is obtained to account for appearance changes. To alleviate the issues with tracking drifts, we
Aliasing-free wideband beamforming using sparse signal representation
Tang, Z.; Blacquière, G.; Leus, G.
2011-01-01
Sparse signal representation (SSR) is considered to be an appealing alternative to classical beamforming for direction-of-arrival (DOA) estimation. For wideband signals, the SSR-based approach constructs steering matrices, referred to as dictionaries in this paper, corresponding to different
Zhang, Shang; Fu, Hongyan; Huang, Shao-Lun; Zhang, Lin
2018-01-01
The miniaturization of spectrometer can broaden the application area of spectrometry, which has huge academic and industrial value. Among various miniaturization approaches, filter-based miniaturization is a promising implementation by utilizing broadband filters with distinct transmission functions. Mathematically, filter-based spectral reconstruction can be modeled as solving a system of linear equations. In this paper, we propose an algorithm of spectral reconstruction based on sparse optimization and dictionary learning. To verify the feasibility of the reconstruction algorithm, we design and implement a simple prototype of a filter-based miniature spectrometer. The experimental results demonstrate that sparse optimization is well applicable to spectral reconstruction whether the spectra are directly sparse or not. As for the non-directly sparse spectra, their sparsity can be enhanced by dictionary learning. In conclusion, the proposed approach has a bright application prospect in fabricating a practical miniature spectrometer. PMID:29470406
Face Image Retrieval of Efficient Sparse Code words and Multiple Attribute in Binning Image
Directory of Open Access Journals (Sweden)
Suchitra S
2017-08-01
Full Text Available ABSTRACT In photography, face recognition and face retrieval play an important role in many applications such as security, criminology and image forensics. Advancements in face recognition make easier for identity matching of an individual with attributes. Latest development in computer vision technologies enables us to extract facial attributes from the input image and provide similar image results. In this paper, we propose a novel LOP and sparse codewords method to provide similar matching results with respect to input query image. To improve accuracy in image results with input image and dynamic facial attributes, Local octal pattern algorithm [LOP] and Sparse codeword applied in offline and online. The offline and online procedures in face image binning techniques apply with sparse code. Experimental results with Pubfig dataset shows that the proposed LOP along with sparse codewords able to provide matching results with increased accuracy of 90%.
Xu, Xia; Shi, Zhenwei; Pan, Bin
2018-07-01
Sparse unmixing aims at recovering pure materials from hyperpspectral images and estimating their abundance fractions. Sparse unmixing is actually ℓ0 problem which is NP-h ard, and a relaxation is often used. In this paper, we attempt to deal with ℓ0 problem directly via a multi-objective based method, which is a non-convex manner. The characteristics of hyperspectral images are integrated into the proposed method, which leads to a new spectra and multi-objective based sparse unmixing method (SMoSU). In order to solve the ℓ0 norm optimization problem, the spectral library is encoded in a binary vector, and a bit-wise flipping strategy is used to generate new individuals in the evolution process. However, a multi-objective method usually produces a number of non-dominated solutions, while sparse unmixing requires a single solution. How to make the final decision for sparse unmixing is challenging. To handle this problem, we integrate the spectral characteristic of hyperspectral images into SMoSU. By considering the spectral correlation in hyperspectral data, we improve the Tchebycheff decomposition function in SMoSU via a new regularization item. This regularization item is able to enforce the individual divergence in the evolution process of SMoSU. In this way, the diversity and convergence of population is further balanced, which is beneficial to the concentration of individuals. In the experiments part, three synthetic datasets and one real-world data are used to analyse the effectiveness of SMoSU, and several state-of-art sparse unmixing algorithms are compared.
Sparse Linear Solver for Power System Analysis Using FPGA
National Research Council Canada - National Science Library
Johnson, J. R; Nagvajara, P; Nwankpa, C
2005-01-01
.... Numerical solution to load flow equations are typically computed using Newton-Raphson iteration, and the most time consuming component of the computation is the solution of a sparse linear system...
Sparse Machine Learning Methods for Understanding Large Text Corpora
National Aeronautics and Space Administration — Sparse machine learning has recently emerged as powerful tool to obtain models of high-dimensional data with high degree of interpretability, at low computational...
Better Size Estimation for Sparse Matrix Products
DEFF Research Database (Denmark)
Amossen, Rasmus Resen; Campagna, Andrea; Pagh, Rasmus
2010-01-01
We consider the problem of doing fast and reliable estimation of the number of non-zero entries in a sparse Boolean matrix product. Let n denote the total number of non-zero entries in the input matrices. We show how to compute a 1 ± ε approximation (with small probability of error) in expected t...
Multi scales based sparse matrix spectral clustering image segmentation
Liu, Zhongmin; Chen, Zhicai; Li, Zhanming; Hu, Wenjin
2018-04-01
In image segmentation, spectral clustering algorithms have to adopt the appropriate scaling parameter to calculate the similarity matrix between the pixels, which may have a great impact on the clustering result. Moreover, when the number of data instance is large, computational complexity and memory use of the algorithm will greatly increase. To solve these two problems, we proposed a new spectral clustering image segmentation algorithm based on multi scales and sparse matrix. We devised a new feature extraction method at first, then extracted the features of image on different scales, at last, using the feature information to construct sparse similarity matrix which can improve the operation efficiency. Compared with traditional spectral clustering algorithm, image segmentation experimental results show our algorithm have better degree of accuracy and robustness.
Yu, Caixia; Zhao, Jingtao; Wang, Yanfei
2017-02-01
Studying small-scale geologic discontinuities, such as faults, cavities and fractures, plays a vital role in analyzing the inner conditions of reservoirs, as these geologic structures and elements can provide storage spaces and migration pathways for petroleum. However, these geologic discontinuities have weak energy and are easily contaminated with noises, and therefore effectively extracting them from seismic data becomes a challenging problem. In this paper, a method for detecting small-scale discontinuities using dictionary learning and sparse representation is proposed that can dig up high-resolution information by sparse coding. A K-SVD (K-means clustering via Singular Value Decomposition) sparse representation model that contains two stage of iteration procedure: sparse coding and dictionary updating, is suggested for mathematically expressing these seismic small-scale discontinuities. Generally, the orthogonal matching pursuit (OMP) algorithm is employed for sparse coding. However, the method can only update one dictionary atom at one time. In order to improve calculation efficiency, a regularized version of OMP algorithm is presented for simultaneously updating a number of atoms at one time. Two numerical experiments demonstrate the validity of the developed method for clarifying and enhancing small-scale discontinuities. The field example of carbonate reservoirs further demonstrates its effectiveness in revealing masked tiny faults and small-scale cavities.
A sparse neural code for some speech sounds but not for others.
Directory of Open Access Journals (Sweden)
Mathias Scharinger
Full Text Available The precise neural mechanisms underlying speech sound representations are still a matter of debate. Proponents of 'sparse representations' assume that on the level of speech sounds, only contrastive or otherwise not predictable information is stored in long-term memory. Here, in a passive oddball paradigm, we challenge the neural foundations of such a 'sparse' representation; we use words that differ only in their penultimate consonant ("coronal" [t] vs. "dorsal" [k] place of articulation and for example distinguish between the German nouns Latz ([lats]; bib and Lachs ([laks]; salmon. Changes from standard [t] to deviant [k] and vice versa elicited a discernible Mismatch Negativity (MMN response. Crucially, however, the MMN for the deviant [lats] was stronger than the MMN for the deviant [laks]. Source localization showed this difference to be due to enhanced brain activity in right superior temporal cortex. These findings reflect a difference in phonological 'sparsity': Coronal [t] segments, but not dorsal [k] segments, are based on more sparse representations and elicit less specific neural predictions; sensory deviations from this prediction are more readily 'tolerated' and accordingly trigger weaker MMNs. The results foster the neurocomputational reality of 'representationally sparse' models of speech perception that are compatible with more general predictive mechanisms in auditory perception.
Directory of Open Access Journals (Sweden)
Yudan Ren
Full Text Available Functional neuroimaging is widely used to examine changes in brain function associated with age, gender or neuropsychiatric conditions. FMRI (functional magnetic resonance imaging studies employ either laboratory-designed tasks that engage the brain with abstracted and repeated stimuli, or resting state paradigms with little behavioral constraint. Recently, novel neuroimaging paradigms using naturalistic stimuli are gaining increasing attraction, as they offer an ecologically-valid condition to approximate brain function in real life. Wider application of naturalistic paradigms in exploring individual differences in brain function, however, awaits further advances in statistical methods for modeling dynamic and complex dataset. Here, we developed a novel data-driven strategy that employs group sparse representation to assess gender differences in brain responses during naturalistic emotional experience. Comparing to independent component analysis (ICA, sparse coding algorithm considers the intrinsic sparsity of neural coding and thus could be more suitable in modeling dynamic whole-brain fMRI signals. An online dictionary learning and sparse coding algorithm was applied to the aggregated fMRI signals from both groups, which was subsequently factorized into a common time series signal dictionary matrix and the associated weight coefficient matrix. Our results demonstrate that group sparse representation can effectively identify gender differences in functional brain network during natural viewing, with improved sensitivity and reliability over ICA-based method. Group sparse representation hence offers a superior data-driven strategy for examining brain function during naturalistic conditions, with great potential for clinical application in neuropsychiatric disorders.
Sparse Linear Identifiable Multivariate Modeling
DEFF Research Database (Denmark)
Henao, Ricardo; Winther, Ole
2011-01-01
and bench-marked on artificial and real biological data sets. SLIM is closest in spirit to LiNGAM (Shimizu et al., 2006), but differs substantially in inference, Bayesian network structure learning and model comparison. Experimentally, SLIM performs equally well or better than LiNGAM with comparable......In this paper we consider sparse and identifiable linear latent variable (factor) and linear Bayesian network models for parsimonious analysis of multivariate data. We propose a computationally efficient method for joint parameter and model inference, and model comparison. It consists of a fully...
Sparse Matrices in Frame Theory
DEFF Research Database (Denmark)
Lemvig, Jakob; Krahmer, Felix; Kutyniok, Gitta
2014-01-01
Frame theory is closely intertwined with signal processing through a canon of methodologies for the analysis of signals using (redundant) linear measurements. The canonical dual frame associated with a frame provides a means for reconstruction by a least squares approach, but other dual frames...... yield alternative reconstruction procedures. The novel paradigm of sparsity has recently entered the area of frame theory in various ways. Of those different sparsity perspectives, we will focus on the situations where frames and (not necessarily canonical) dual frames can be written as sparse matrices...
Programming for Sparse Minimax Optimization
DEFF Research Database (Denmark)
Jonasson, K.; Madsen, Kaj
1994-01-01
We present an algorithm for nonlinear minimax optimization which is well suited for large and sparse problems. The method is based on trust regions and sequential linear programming. On each iteration, a linear minimax problem is solved for a basic step. If necessary, this is followed...... by the determination of a minimum norm corrective step based on a first-order Taylor approximation. No Hessian information needs to be stored. Global convergence is proved. This new method has been extensively tested and compared with other methods, including two well known codes for nonlinear programming...
High Order Tensor Formulation for Convolutional Sparse Coding
Bibi, Adel Aamer
2017-12-25
Convolutional sparse coding (CSC) has gained attention for its successful role as a reconstruction and a classification tool in the computer vision and machine learning community. Current CSC methods can only reconstruct singlefeature 2D images independently. However, learning multidimensional dictionaries and sparse codes for the reconstruction of multi-dimensional data is very important, as it examines correlations among all the data jointly. This provides more capacity for the learned dictionaries to better reconstruct data. In this paper, we propose a generic and novel formulation for the CSC problem that can handle an arbitrary order tensor of data. Backed with experimental results, our proposed formulation can not only tackle applications that are not possible with standard CSC solvers, including colored video reconstruction (5D- tensors), but it also performs favorably in reconstruction with much fewer parameters as compared to naive extensions of standard CSC to multiple features/channels.
High-Order Sparse Linear Predictors for Audio Processing
DEFF Research Database (Denmark)
Giacobello, Daniele; van Waterschoot, Toon; Christensen, Mads Græsbøll
2010-01-01
Linear prediction has generally failed to make a breakthrough in audio processing, as it has done in speech processing. This is mostly due to its poor modeling performance, since an audio signal is usually an ensemble of different sources. Nevertheless, linear prediction comes with a whole set...... of interesting features that make the idea of using it in audio processing not far fetched, e.g., the strong ability of modeling the spectral peaks that play a dominant role in perception. In this paper, we provide some preliminary conjectures and experiments on the use of high-order sparse linear predictors...... in audio processing. These predictors, successfully implemented in modeling the short-term and long-term redundancies present in speech signals, will be used to model tonal audio signals, both monophonic and polyphonic. We will show how the sparse predictors are able to model efﬁciently the different...
Sparse Covariance Matrix Estimation by DCA-Based Algorithms.
Phan, Duy Nhat; Le Thi, Hoai An; Dinh, Tao Pham
2017-11-01
This letter proposes a novel approach using the [Formula: see text]-norm regularization for the sparse covariance matrix estimation (SCME) problem. The objective function of SCME problem is composed of a nonconvex part and the [Formula: see text] term, which is discontinuous and difficult to tackle. Appropriate DC (difference of convex functions) approximations of [Formula: see text]-norm are used that result in approximation SCME problems that are still nonconvex. DC programming and DCA (DC algorithm), powerful tools in nonconvex programming framework, are investigated. Two DC formulations are proposed and corresponding DCA schemes developed. Two applications of the SCME problem that are considered are classification via sparse quadratic discriminant analysis and portfolio optimization. A careful empirical experiment is performed through simulated and real data sets to study the performance of the proposed algorithms. Numerical results showed their efficiency and their superiority compared with seven state-of-the-art methods.
A Novel CSR-Based Sparse Matrix-Vector Multiplication on GPUs
Directory of Open Access Journals (Sweden)
Guixia He
2016-01-01
Full Text Available Sparse matrix-vector multiplication (SpMV is an important operation in scientific computations. Compressed sparse row (CSR is the most frequently used format to store sparse matrices. However, CSR-based SpMVs on graphic processing units (GPUs, for example, CSR-scalar and CSR-vector, usually have poor performance due to irregular memory access patterns. This motivates us to propose a perfect CSR-based SpMV on the GPU that is called PCSR. PCSR involves two kernels and accesses CSR arrays in a fully coalesced manner by introducing a middle array, which greatly alleviates the deficiencies of CSR-scalar (rare coalescing and CSR-vector (partial coalescing. Test results on a single C2050 GPU show that PCSR fully outperforms CSR-scalar, CSR-vector, and CSRMV and HYBMV in the vendor-tuned CUSPARSE library and is comparable with a most recently proposed CSR-based algorithm, CSR-Adaptive. Furthermore, we extend PCSR on a single GPU to multiple GPUs. Experimental results on four C2050 GPUs show that no matter whether the communication between GPUs is considered or not PCSR on multiple GPUs achieves good performance and has high parallel efficiency.
McGuire, Luke; Rengers, Francis K.; Kean, Jason W.; Coe, Jeffrey A.; Mirus, Benjamin B.; Baum, Rex L.; Godt, Jonathan W.
2016-01-01
More than 1100 debris flows were mobilized from shallow landslides during a rainstorm from 9 to 13 September 2013 in the Colorado Front Range, with the vast majority initiating on sparsely vegetated, south facing terrain. To investigate the physical processes responsible for the observed aspect control, we made measurements of soil properties on a densely forested north facing hillslope and a grassland-dominated south facing hillslope in the Colorado Front Range and performed numerical modeling of transient changes in soil pore water pressure throughout the rainstorm. Using the numerical model, we quantitatively assessed interactions among vegetation, rainfall interception, subsurface hydrology, and slope stability. Results suggest that apparent cohesion supplied by roots was responsible for the observed connection between debris flow initiation and slope aspect. Results suggest that future climate-driven modifications to forest structure could substantially influence landslide hazards throughout the Front Range and similar water-limited environments where vegetation communities may be more susceptible to small variations in climate.
Pattern solutions of the Klausmeier Model for banded vegetation in semi-arid environments I
International Nuclear Information System (INIS)
Sherratt, Jonathan A
2010-01-01
In many semi-arid environments, vegetation cover is sparse, and is self-organized into large-scale spatial patterns. In particular, banded vegetation is typical on hillsides. Mathematical modelling is widely used to study these banded patterns, and many models are effectively extensions of a coupled reaction–diffusion–advection system proposed by Klausmeier (1999 Science 284 1826–8). However, there is currently very little mathematical theory on pattern solutions of these equations. This paper is the first in a series whose aim is a comprehensive understanding of these solutions, which can act as a springboard both for future simulation-based studies of the Klausmeier model, and for analysis of model extensions. The author focusses on a particular part of parameter space, and derives expressions for the boundaries of the parameter region in which patterns occur. The calculations are valid to leading order at large values of the 'slope parameter', which reflects a comparison of the rate of water flow downhill with the rate of vegetation dispersal. The form of the corresponding patterns is also studied, and the author shows that the leading order equations change close to one boundary of the parameter region in which there are patterns, leading to a homoclinic solution. Conclusions are drawn on the way in which changes in mean annual rainfall affect pattern properties, including overall biomass productivity
Energy Technology Data Exchange (ETDEWEB)
Aktulga, Hasan Metin [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Buluc, Aydin [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Williams, Samuel [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Yang, Chao [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States)
2014-08-14
Obtaining highly accurate predictions on the properties of light atomic nuclei using the configuration interaction (CI) approach requires computing a few extremal Eigen pairs of the many-body nuclear Hamiltonian matrix. In the Many-body Fermion Dynamics for nuclei (MFDn) code, a block Eigen solver is used for this purpose. Due to the large size of the sparse matrices involved, a significant fraction of the time spent on the Eigen value computations is associated with the multiplication of a sparse matrix (and the transpose of that matrix) with multiple vectors (SpMM and SpMM-T). Existing implementations of SpMM and SpMM-T significantly underperform expectations. Thus, in this paper, we present and analyze optimized implementations of SpMM and SpMM-T. We base our implementation on the compressed sparse blocks (CSB) matrix format and target systems with multi-core architectures. We develop a performance model that allows us to understand and estimate the performance characteristics of our SpMM kernel implementations, and demonstrate the efficiency of our implementation on a series of real-world matrices extracted from MFDn. In particular, we obtain 3-4 speedup on the requisite operations over good implementations based on the commonly used compressed sparse row (CSR) matrix format. The improvements in the SpMM kernel suggest we may attain roughly a 40% speed up in the overall execution time of the block Eigen solver used in MFDn.
International Nuclear Information System (INIS)
Xie, Huiqiao; Yang, Yi; Tang, Xiangyang; Niu, Tianye; Ren, Yi
2015-01-01
Purpose: Optimization-based reconstruction has been proposed and investigated for reconstructing CT images from sparse views, as such the radiation dose can be substantially reduced while maintaining acceptable image quality. The investigation has so far focused on reconstruction from evenly distributed sparse views. Recognizing the clinical situations wherein only unevenly sparse views are available, e.g., image guided radiation therapy, CT perfusion and multi-cycle cardiovascular imaging, we investigate the performance of optimization-based image reconstruction from unevenly sparse projection views in this work. Methods: The investigation is carried out using the FORBILD and an anthropomorphic head phantoms. In the study, 82 views, which are evenly sorted out from a full (360°) axial CT scan consisting of 984 views, form sub-scan I. Another 82 views are sorted out in a similar manner to form sub-scan II. As such, a CT scan with sparse (164) views at 1:6 ratio are formed. By shifting the two sub-scans relatively in view angulation, a CT scan with unevenly distributed sparse (164) views at 1:6 ratio are formed. An optimization-based method is implemented to reconstruct images from the unevenly distributed views. By taking the FBP reconstruction from the full scan (984 views) as the reference, the root mean square (RMS) between the reference and the optimization-based reconstruction is used to evaluate the performance quantitatively. Results: In visual inspection, the optimization-based method outperforms the FBP substantially in the reconstruction from unevenly distributed, which are quantitatively verified by the RMS gauged globally and in ROIs in both the FORBILD and anthropomorphic head phantoms. The RMS increases with increasing severity in the uneven angular distribution, especially in the case of anthropomorphic head phantom. Conclusion: The optimization-based image reconstruction can save radiation dose up to 12-fold while providing acceptable image quality
Linking Chaotic Advection with Subsurface Biogeochemical Processes
Mays, D. C.; Freedman, V. L.; White, S. K.; Fang, Y.; Neupauer, R.
2017-12-01
This work investigates the extent to which groundwater flow kinematics drive subsurface biogeochemical processes. In terms of groundwater flow kinematics, we consider chaotic advection, whose essential ingredient is stretching and folding of plumes. Chaotic advection is appealing within the context of groundwater remediation because it has been shown to optimize plume spreading in the laminar flows characteristic of aquifers. In terms of subsurface biogeochemical processes, we consider an existing model for microbially-mediated reduction of relatively mobile uranium(VI) to relatively immobile uranium(IV) following injection of acetate into a floodplain aquifer beneath a former uranium mill in Rifle, Colorado. This model has been implemented in the reactive transport code eSTOMP, the massively parallel version of STOMP (Subsurface Transport Over Multiple Phases). This presentation will report preliminary numerical simulations in which the hydraulic boundary conditions in the eSTOMP model are manipulated to simulate chaotic advection resulting from engineered injection and extraction of water through a manifold of wells surrounding the plume of injected acetate. This approach provides an avenue to simulate the impact of chaotic advection within the existing framework of the eSTOMP code.
Superresolving Black Hole Images with Full-Closure Sparse Modeling
Crowley, Chelsea; Akiyama, Kazunori; Fish, Vincent
2018-01-01
It is believed that almost all galaxies have black holes at their centers. Imaging a black hole is a primary objective to answer scientific questions relating to relativistic accretion and jet formation. The Event Horizon Telescope (EHT) is set to capture images of two nearby black holes, Sagittarius A* at the center of the Milky Way galaxy roughly 26,000 light years away and the other M87 which is in Virgo A, a large elliptical galaxy that is 50 million light years away. Sparse imaging techniques have shown great promise for reconstructing high-fidelity superresolved images of black holes from simulated data. Previous work has included the effects of atmospheric phase errors and thermal noise, but not systematic amplitude errors that arise due to miscalibration. We explore a full-closure imaging technique with sparse modeling that uses closure amplitudes and closure phases to improve the imaging process. This new technique can successfully handle data with systematic amplitude errors. Applying our technique to synthetic EHT data of M87, we find that full-closure sparse modeling can reconstruct images better than traditional methods and recover key structural information on the source, such as the shape and size of the predicted photon ring. These results suggest that our new approach will provide superior imaging performance for data from the EHT and other interferometric arrays.
Zhang, J.; Okin, G.
2017-12-01
Vegetation is one of the most important driving factors of different ecosystem processes in drylands. The structure of vegetation controls the spatial distribution of moisture and heat in the canopy and the surrounding area. Also, the structure of vegetation influences both airflow and boundary layer resistance above the land surface. Multispectral satellite remote sensing has been widely used to monitor vegetation coverage and its change; however, it can only capture 2D images, which do not contain the vertical information of vegetation. In situ observation uses different methods to measure the structure of vegetation, and their results are accurate; however, these methods are laborious and time-consuming, and susceptible to undersampling in spatial heterogeneity. Drylands are sparsely covered by short plants, which allows the drone fly at a relatively low height to obtain ultra-high resolution images. Structure-from-motion (SfM) is a photogrammetric method that was proved to produce 3D model based on 2D images. Drone-based remote sensing can obtain the multiangle images for one object, which can be used to constructed 3D models of vegetation in drylands. Using these images detected by the drone, the orthomosaics and digital surface model (DSM) can be built. In this study, the drone-based remote sensing was conducted in Jornada Basin, New Mexico, in the spring of 2016 and 2017, and three derived vegetation parameters (i.e., canopy size, bare soil gap size, and plant height) were compared with those obtained with field measurement. The correlation coefficient of canopy size, bare soil gap size, and plant height between drone images and field data are 0.91, 0.96, and 0.84, respectively. The two-year averaged root-mean-square error (RMSE) of canopy size, bare soil gap size, and plant height between drone images and field data are 0.61 m, 1.21 m, and 0.25 cm, respectively. The two-year averaged measure error (ME) of canopy size, bare soil gap size, and plant height
Sparsely-Packetized Predictive Control by Orthogonal Matching Pursuit
DEFF Research Database (Denmark)
Nagahara, Masaaki; Quevedo, Daniel; Østergaard, Jan
2012-01-01
We study packetized predictive control, known to be robust against packet dropouts in networked systems. To obtain sparse packets for rate-limited networks, we design control packets via an ℓ0 optimization, which can be eectively solved by orthogonal matching pursuit. Our formulation ensures...
Comparison of Sparse and Jack-knife partial least squares regression methods for variable selection
DEFF Research Database (Denmark)
Karaman, Ibrahim; Qannari, El Mostafa; Martens, Harald
2013-01-01
The objective of this study was to compare two different techniques of variable selection, Sparse PLSR and Jack-knife PLSR, with respect to their predictive ability and their ability to identify relevant variables. Sparse PLSR is a method that is frequently used in genomics, whereas Jack-knife PL...
DEFF Research Database (Denmark)
Shi, Liming; Nielsen, Jesper Kjær; Jensen, Jesper Rindom
2017-01-01
The modeling of speech can be used for speech synthesis and speech recognition. We present a speech analysis method based on pole-zero modeling of speech with mixed block sparse and Gaussian excitation. By using a pole-zero model, instead of the all-pole model, a better spectral fitting can...... be expected. Moreover, motivated by the block sparse glottal flow excitation during voiced speech and the white noise excitation for unvoiced speech, we model the excitation sequence as a combination of block sparse signals and white noise. A variational EM (VEM) method is proposed for estimating...... in reconstructing of the block sparse excitation....
Sparse PDF Volumes for Consistent Multi-Resolution Volume Rendering
Sicat, Ronell Barrera; Kruger, Jens; Moller, Torsten; Hadwiger, Markus
2014-01-01
This paper presents a new multi-resolution volume representation called sparse pdf volumes, which enables consistent multi-resolution volume rendering based on probability density functions (pdfs) of voxel neighborhoods. These pdfs are defined
Nobile, F.; Tamellini, L.; Tempone, Raul
2015-01-01
In this work we provide a convergence analysis for the quasi-optimal version of the sparse-grids stochastic collocation method we presented in a previous work: “On the optimal polynomial approximation of stochastic PDEs by Galerkin and collocation methods” (Beck et al., Math Models Methods Appl Sci 22(09), 2012). The construction of a sparse grid is recast into a knapsack problem: a profit is assigned to each hierarchical surplus and only the most profitable ones are added to the sparse grid. The convergence rate of the sparse grid approximation error with respect to the number of points in the grid is then shown to depend on weighted summability properties of the sequence of profits. This is a very general argument that can be applied to sparse grids built with any uni-variate family of points, both nested and non-nested. As an example, we apply such quasi-optimal sparse grids to the solution of a particular elliptic PDE with stochastic diffusion coefficients, namely the “inclusions problem”: we detail the convergence estimates obtained in this case using polynomial interpolation on either nested (Clenshaw–Curtis) or non-nested (Gauss–Legendre) abscissas, verify their sharpness numerically, and compare the performance of the resulting quasi-optimal grids with a few alternative sparse-grid construction schemes recently proposed in the literature.
Nobile, F.
2015-10-30
In this work we provide a convergence analysis for the quasi-optimal version of the sparse-grids stochastic collocation method we presented in a previous work: “On the optimal polynomial approximation of stochastic PDEs by Galerkin and collocation methods” (Beck et al., Math Models Methods Appl Sci 22(09), 2012). The construction of a sparse grid is recast into a knapsack problem: a profit is assigned to each hierarchical surplus and only the most profitable ones are added to the sparse grid. The convergence rate of the sparse grid approximation error with respect to the number of points in the grid is then shown to depend on weighted summability properties of the sequence of profits. This is a very general argument that can be applied to sparse grids built with any uni-variate family of points, both nested and non-nested. As an example, we apply such quasi-optimal sparse grids to the solution of a particular elliptic PDE with stochastic diffusion coefficients, namely the “inclusions problem”: we detail the convergence estimates obtained in this case using polynomial interpolation on either nested (Clenshaw–Curtis) or non-nested (Gauss–Legendre) abscissas, verify their sharpness numerically, and compare the performance of the resulting quasi-optimal grids with a few alternative sparse-grid construction schemes recently proposed in the literature.
International Nuclear Information System (INIS)
Kupka, F.
1997-11-01
This thesis deals with the extension of sparse grid techniques to spectral methods for the solution of partial differential equations with periodic boundary conditions. A review on boundary and initial-boundary value problems and a discussion on numerical resolution is used to motivate this research. Spectral methods are introduced by projection techniques, and by three model problems: the stationary and the transient Helmholtz equations, and the linear advection equation. The approximation theory on the hyperbolic cross is reviewed and its close relation to sparse grids is demonstrated. This approach extends to non-periodic problems. Various Sobolev spaces with dominant mixed derivative are introduced to provide error estimates for Fourier approximation and interpolation on the hyperbolic cross and on sparse grids by means of Sobolev norms. The theorems are immediately applicable to the stability and convergence analysis of sparse grid spectral methods. This is explicitly demonstrated for the three model problems. A variant of the von Neumann condition is introduced to simplify the stability analysis of the time-dependent model problems. The discrete Fourier transformation on sparse grids is discussed together with its software implementation. Results on numerical experiments are used to illustrate the performance of the new method with respect to the smoothness properties of each example. The potential of the method in mathematical modelling is estimated and generalizations to other sparse grid methods are suggested. The appendix includes a complete Fortran90 program to solve the linear advection equation by the sparse grid Fourier collocation method and a third-order Runge-Kutta routine for integration in time. (author)
Object tracking by occlusion detection via structured sparse learning
Zhang, Tianzhu; Ghanem, Bernard; Xu, Changsheng; Ahuja, Narendra
2013-01-01
occlusion through structured sparse learning. We test our tracker on challenging benchmark sequences, such as sports videos, which involve heavy occlusion, drastic illumination changes, and large pose variations. Experimental results show that our tracker
Directory of Open Access Journals (Sweden)
Vibha Tiwari
2015-12-01
Full Text Available Compressive sensing theory enables faithful reconstruction of signals, sparse in domain $ \\Psi $, at sampling rate lesser than Nyquist criterion, while using sampling or sensing matrix $ \\Phi $ which satisfies restricted isometric property. The role played by sensing matrix $ \\Phi $ and sparsity matrix $ \\Psi $ is vital in faithful reconstruction. If the sensing matrix is dense then it takes large storage space and leads to high computational cost. In this paper, effort is made to design sparse sensing matrix with least incurred computational cost while maintaining quality of reconstructed image. The design approach followed is based on sparse block circulant matrix (SBCM with few modifications. The other used sparse sensing matrix consists of 15 ones in each column. The medical images used are acquired from US, MRI and CT modalities. The image quality measurement parameters are used to compare the performance of reconstructed medical images using various sensing matrices. It is observed that, since Gram matrix of dictionary matrix ($ \\Phi \\Psi \\mathrm{} $ is closed to identity matrix in case of proposed modified SBCM, therefore, it helps to reconstruct the medical images of very good quality.
One-shot 3D scanning by combining sparse landmarks with dense gradient information
Di Martino, Matías; Flores, Jorge; Ferrari, José A.
2018-06-01
Scene understanding is one of the most challenging and popular problems in the field of robotics and computer vision and the estimation of 3D information is at the core of most of these applications. In order to retrieve the 3D structure of a test surface we propose a single shot approach that combines dense gradient information with sparse absolute measurements. To that end, we designed a colored pattern that codes fine horizontal and vertical fringes, with sparse corners landmarks. By measuring the deformation (bending) of horizontal and vertical fringes, we are able to estimate surface local variations (i.e. its gradient field). Then corner sparse landmarks are detected and matched to infer spare absolute information about the test surface height. Local gradient information is combined with the sparse absolute values which work as anchors to guide the integration process. We show that this can be mathematically done in a very compact and intuitive way by properly defining a Poisson-like partial differential equation. Then we address in detail how the problem can be formulated in a discrete domain and how it can be practically solved by straight forward linear numerical solvers. Finally, validation experiment are presented.
Single-Trial Evoked Potential Estimating Based on Sparse Coding under Impulsive Noise Environment
Directory of Open Access Journals (Sweden)
Nannan Yu
2018-01-01
Full Text Available Estimating single-trial evoked potentials (EPs corrupted by the spontaneous electroencephalogram (EEG can be regarded as signal denoising problem. Sparse coding has significant success in signal denoising and EPs have been proven to have strong sparsity over an appropriate dictionary. In sparse coding, the noise generally is considered to be a Gaussian random process. However, some studies have shown that the background noise in EPs may present an impulsive characteristic which is far from Gaussian but suitable to be modeled by the α-stable distribution 1<α≤2. Consequently, the performances of general sparse coding will degrade or even fail. In view of this, we present a new sparse coding algorithm using p-norm optimization in single-trial EPs estimating. The algorithm can track the underlying EPs corrupted by α-stable distribution noise, trial-by-trial, without the need to estimate the α value. Simulations and experiments on human visual evoked potentials and event-related potentials are carried out to examine the performance of the proposed approach. Experimental results show that the proposed method is effective in estimating single-trial EPs under impulsive noise environment.
Semi-blind sparse image reconstruction with application to MRFM.
Park, Se Un; Dobigeon, Nicolas; Hero, Alfred O
2012-09-01
We propose a solution to the image deconvolution problem where the convolution kernel or point spread function (PSF) is assumed to be only partially known. Small perturbations generated from the model are exploited to produce a few principal components explaining the PSF uncertainty in a high-dimensional space. Unlike recent developments on blind deconvolution of natural images, we assume the image is sparse in the pixel basis, a natural sparsity arising in magnetic resonance force microscopy (MRFM). Our approach adopts a Bayesian Metropolis-within-Gibbs sampling framework. The performance of our Bayesian semi-blind algorithm for sparse images is superior to previously proposed semi-blind algorithms such as the alternating minimization algorithm and blind algorithms developed for natural images. We illustrate our myopic algorithm on real MRFM tobacco virus data.
Multi-threaded Sparse Matrix-Matrix Multiplication for Many-Core and GPU Architectures.
Energy Technology Data Exchange (ETDEWEB)
Deveci, Mehmet [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Rajamanickam, Sivasankaran [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States); Trott, Christian Robert [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)
2017-12-01
Sparse Matrix-Matrix multiplication is a key kernel that has applications in several domains such as scienti c computing and graph analysis. Several algorithms have been studied in the past for this foundational kernel. In this paper, we develop parallel algorithms for sparse matrix-matrix multiplication with a focus on performance portability across different high performance computing architectures. The performance of these algorithms depend on the data structures used in them. We compare different types of accumulators in these algorithms and demonstrate the performance difference between these data structures. Furthermore, we develop a meta-algorithm, kkSpGEMM, to choose the right algorithm and data structure based on the characteristics of the problem. We show performance comparisons on three architectures and demonstrate the need for the community to develop two phase sparse matrix-matrix multiplication implementations for efficient reuse of the data structures involved.
Building Input Adaptive Parallel Applications: A Case Study of Sparse Grid Interpolation
Murarasu, Alin
2012-12-01
The well-known power wall resulting in multi-cores requires special techniques for speeding up applications. In this sense, parallelization plays a crucial role. Besides standard serial optimizations, techniques such as input specialization can also bring a substantial contribution to the speedup. By identifying common patterns in the input data, we propose new algorithms for sparse grid interpolation that accelerate the state-of-the-art non-specialized version. Sparse grid interpolation is an inherently hierarchical method of interpolation employed for example in computational steering applications for decompressing highdimensional simulation data. In this context, improving the speedup is essential for real-time visualization. Using input specialization, we report a speedup of up to 9x over the nonspecialized version. The paper covers the steps we took to reach this speedup by means of input adaptivity. Our algorithms will be integrated in fastsg, a library for fast sparse grid interpolation. © 2012 IEEE.
A Practical View on Tunable Sparse Network Coding
DEFF Research Database (Denmark)
Sørensen, Chres Wiant; Shahbaz Badr, Arash; Cabrera Guerrero, Juan Alberto
2015-01-01
Tunable sparse network coding (TSNC) constitutes a promising concept for trading off computational complexity and delay performance. This paper advocates for the use of judicious feedback as a key not only to make TSNC practical, but also to deliver a highly consistent and controlled delay perfor...
Sparse Generalized Fourier Series via Collocation-based Optimization
2014-11-01
Theory 51, 12 (2005) 4203– 4215. [6] P. CONSTANTINE , M. ELDRED AND E. PHIPPS, Sparse pseu- dospectral approximation method. Comput. Methods Appl. Mech...Visition XVI: Algorithms, Techniques, Active Vision , and Materials Handling, 224 (1997). [15] J. SHEN AND L. WANG, Some recent advances on spectral methods
Sobol indices for dimension adaptivity in sparse grids
Dwight, R.P.; Desmedt, S.G.L.; Shoeibi Omrani, P.
2016-01-01
Propagation of random variables through computer codes of many inputs is primarily limited by computational expense. The use of sparse grids mitigates these costs somewhat; here we show how Sobol indices can be used to perform dimension adaptivity to mitigate them further. The method is compared to
EEG Source Reconstruction using Sparse Basis Function Representations
DEFF Research Database (Denmark)
Hansen, Sofie Therese; Hansen, Lars Kai
2014-01-01
-validation this approach is more automated than competing approaches such as Multiple Sparse Priors (Friston et al., 2008) or Champagne (Wipf et al., 2010) that require manual selection of noise level and auxiliary signal free data, respectively. Finally, we propose an unbiased estimator of the reproducibility...
Haghighi, E.; Kirchner, J. W.; Entekhabi, D.
2016-12-01
The relationship between soil moisture and evapotranspiration (ET) fluxes is an important component of land-atmosphere interactions controlling hydrology-climate feedback processes. Important as this relationship is, it remains empirical and physical mechanisms governing its dynamics are insufficiently studied. This is particularly of importance for semiarid regions (currently comprising about half of the Earth's land surface) where the shallow surface soil layer is the primary source of ET and direct evaporation from bare soil is likely a large component of the total flux. Hence, ET-soil moisture coupling in these regions is hypothesized to be strongly influenced by soil evaporation and associated mechanisms. Motivated by recent progress in mechanistic modeling of localized heat and mass exchange rates from bare soil surfaces covered by cylindrical bluff-body elements, we developed a physically based ET model explicitly incorporating coupled impacts of soil moisture and vegetation-induced turbulence in the near-surface region. Model predictions of ET and its partitioning were in good agreement with measured data and suggest that the strength and nature of ET-soil moisture interactions in sparsely vegetated areas are strongly influenced by aerodynamic (rather than radiative) forcing namely wind speed and near-surface turbulence generation as a function of vegetation type and cover fraction. The results demonstrated that the relationship between ET and soil moisture varies from a nonlinear function (the dual regime behavior) to a single moisture-limited regime (linear relationship) by increasing wind velocity and enhancing turbulence generation in the near-surface region (small-scale woody vegetation species of low cover fraction). Potential benefits of this study for improving accuracy and predictive capabilities of remote sensing techniques when applied to semiarid environments will also be discussed.
Efficient Sparse Signal Transmission over a Lossy Link Using Compressive Sensing
Directory of Open Access Journals (Sweden)
Liantao Wu
2015-08-01
Full Text Available Reliable data transmission over lossy communication link is expensive due to overheads for error protection. For signals that have inherent sparse structures, compressive sensing (CS is applied to facilitate efficient sparse signal transmissions over lossy communication links without data compression or error protection. The natural packet loss in the lossy link is modeled as a random sampling process of the transmitted data, and the original signal will be reconstructed from the lossy transmission results using the CS-based reconstruction method at the receiving end. The impacts of packet lengths on transmission efficiency under different channel conditions have been discussed, and interleaving is incorporated to mitigate the impact of burst data loss. Extensive simulations and experiments have been conducted and compared to the traditional automatic repeat request (ARQ interpolation technique, and very favorable results have been observed in terms of both accuracy of the reconstructed signals and the transmission energy consumption. Furthermore, the packet length effect provides useful insights for using compressed sensing for efficient sparse signal transmission via lossy links.
Denning, Peter J.
1989-01-01
Sparse distributed memory was proposed be Pentti Kanerva as a realizable architecture that could store large patterns and retrieve them based on partial matches with patterns representing current sensory inputs. This memory exhibits behaviors, both in theory and in experiment, that resemble those previously unapproached by machines - e.g., rapid recognition of faces or odors, discovery of new connections between seemingly unrelated ideas, continuation of a sequence of events when given a cue from the middle, knowing that one doesn't know, or getting stuck with an answer on the tip of one's tongue. These behaviors are now within reach of machines that can be incorporated into the computing systems of robots capable of seeing, talking, and manipulating. Kanerva's theory is a break with the Western rationalistic tradition, allowing a new interpretation of learning and cognition that respects biology and the mysteries of individual human beings.
International Nuclear Information System (INIS)
Gamon, J.A.; Field, C.B.; Goulden, M.L.; Griffin, K.L.; Hartley, A.E.; Joel, G.; Penuelas, J.; Valentini, R.
1995-01-01
In a range of plant species from three Californian vegetation types, we examined the widely used ''normalized difference vegetation index'' (NDVI) and ''simple ratio'' (SR) as indicators of canopy structure, light absorption, and photosynthetic activity. These indices, which are derived from canopy reflectance in the red and near-infrared wavebands, highlighted phenological differences between evergreen and deciduous canopies. They were poor indicators of total canopy biomass due to the varying abundance of non-green standing biomass in these vegetation types. However, in sparse canopies (leaf area index (LAI) apprxeq 0-2), NDVI was a sensitive indicator of canopy structure and chemical content (green biomass, green leaf area index, chlorophyll content, and foliar nitrogen content). At higher canopy green LAI values ( gt 2; typical of dense shrubs and trees), NDVI was relatively insensitive to changes in canopy structure. Compared to SR, NDVI was better correlated with indicators of canopy structure and chemical content, but was equivalent to the logarithm of SR. In agreement with theoretical expectations, both NDVI and SR exhibited near-linear correlations with fractional PAR intercepted by green leaves over a wide range of canopy densities. Maximum daily photosynthetic rates were positively correlated with NDVI and SR in annual grassland and semideciduous shrubs where canopy development and photosynthetic activity were in synchrony. The indices were also correlated with peak springtime canopy photosynthetic rates in evergreens. However, over most of the year, these indices were poor predictors of photosynthetic performance in evergreen species due to seasonal reductions in photosynthetic radiation-use efficiency that occurred without substantial declines in canopy greenness. Our results support the use of these vegetation indices as remote indicators of PAR absorption, and thus potential photosynthetic activity, even in
SPARSE: quadratic time simultaneous alignment and folding of RNAs without sequence-based heuristics.
Will, Sebastian; Otto, Christina; Miladi, Milad; Möhl, Mathias; Backofen, Rolf
2015-08-01
RNA-Seq experiments have revealed a multitude of novel ncRNAs. The gold standard for their analysis based on simultaneous alignment and folding suffers from extreme time complexity of [Formula: see text]. Subsequently, numerous faster 'Sankoff-style' approaches have been suggested. Commonly, the performance of such methods relies on sequence-based heuristics that restrict the search space to optimal or near-optimal sequence alignments; however, the accuracy of sequence-based methods breaks down for RNAs with sequence identities below 60%. Alignment approaches like LocARNA that do not require sequence-based heuristics, have been limited to high complexity ([Formula: see text] quartic time). Breaking this barrier, we introduce the novel Sankoff-style algorithm 'sparsified prediction and alignment of RNAs based on their structure ensembles (SPARSE)', which runs in quadratic time without sequence-based heuristics. To achieve this low complexity, on par with sequence alignment algorithms, SPARSE features strong sparsification based on structural properties of the RNA ensembles. Following PMcomp, SPARSE gains further speed-up from lightweight energy computation. Although all existing lightweight Sankoff-style methods restrict Sankoff's original model by disallowing loop deletions and insertions, SPARSE transfers the Sankoff algorithm to the lightweight energy model completely for the first time. Compared with LocARNA, SPARSE achieves similar alignment and better folding quality in significantly less time (speedup: 3.7). At similar run-time, it aligns low sequence identity instances substantially more accurate than RAF, which uses sequence-based heuristics. © The Author 2015. Published by Oxford University Press.
Bound on the estimation grid size for sparse reconstruction in direction of arrival estimation
Coutiño Minguez, M.A.; Pribic, R; Leus, G.J.T.
2016-01-01
A bound for sparse reconstruction involving both the signal-to-noise ratio (SNR) and the estimation grid size is presented. The bound is illustrated for the case of a uniform linear array (ULA). By reducing the number of possible sparse vectors present in the feasible set of a constrained ℓ1-norm
Locality constrained joint dynamic sparse representation for local matching based face recognition.
Wang, Jianzhong; Yi, Yugen; Zhou, Wei; Shi, Yanjiao; Qi, Miao; Zhang, Ming; Zhang, Baoxue; Kong, Jun
2014-01-01
Recently, Sparse Representation-based Classification (SRC) has attracted a lot of attention for its applications to various tasks, especially in biometric techniques such as face recognition. However, factors such as lighting, expression, pose and disguise variations in face images will decrease the performances of SRC and most other face recognition techniques. In order to overcome these limitations, we propose a robust face recognition method named Locality Constrained Joint Dynamic Sparse Representation-based Classification (LCJDSRC) in this paper. In our method, a face image is first partitioned into several smaller sub-images. Then, these sub-images are sparsely represented using the proposed locality constrained joint dynamic sparse representation algorithm. Finally, the representation results for all sub-images are aggregated to obtain the final recognition result. Compared with other algorithms which process each sub-image of a face image independently, the proposed algorithm regards the local matching-based face recognition as a multi-task learning problem. Thus, the latent relationships among the sub-images from the same face image are taken into account. Meanwhile, the locality information of the data is also considered in our algorithm. We evaluate our algorithm by comparing it with other state-of-the-art approaches. Extensive experiments on four benchmark face databases (ORL, Extended YaleB, AR and LFW) demonstrate the effectiveness of LCJDSRC.
Locality constrained joint dynamic sparse representation for local matching based face recognition.
Directory of Open Access Journals (Sweden)
Jianzhong Wang
Full Text Available Recently, Sparse Representation-based Classification (SRC has attracted a lot of attention for its applications to various tasks, especially in biometric techniques such as face recognition. However, factors such as lighting, expression, pose and disguise variations in face images will decrease the performances of SRC and most other face recognition techniques. In order to overcome these limitations, we propose a robust face recognition method named Locality Constrained Joint Dynamic Sparse Representation-based Classification (LCJDSRC in this paper. In our method, a face image is first partitioned into several smaller sub-images. Then, these sub-images are sparsely represented using the proposed locality constrained joint dynamic sparse representation algorithm. Finally, the representation results for all sub-images are aggregated to obtain the final recognition result. Compared with other algorithms which process each sub-image of a face image independently, the proposed algorithm regards the local matching-based face recognition as a multi-task learning problem. Thus, the latent relationships among the sub-images from the same face image are taken into account. Meanwhile, the locality information of the data is also considered in our algorithm. We evaluate our algorithm by comparing it with other state-of-the-art approaches. Extensive experiments on four benchmark face databases (ORL, Extended YaleB, AR and LFW demonstrate the effectiveness of LCJDSRC.
Balanced sparse model for tight frames in compressed sensing magnetic resonance imaging.
Directory of Open Access Journals (Sweden)
Yunsong Liu
Full Text Available Compressed sensing has shown to be promising to accelerate magnetic resonance imaging. In this new technology, magnetic resonance images are usually reconstructed by enforcing its sparsity in sparse image reconstruction models, including both synthesis and analysis models. The synthesis model assumes that an image is a sparse combination of atom signals while the analysis model assumes that an image is sparse after the application of an analysis operator. Balanced model is a new sparse model that bridges analysis and synthesis models by introducing a penalty term on the distance of frame coefficients to the range of the analysis operator. In this paper, we study the performance of the balanced model in tight frame based compressed sensing magnetic resonance imaging and propose a new efficient numerical algorithm to solve the optimization problem. By tuning the balancing parameter, the new model achieves solutions of three models. It is found that the balanced model has a comparable performance with the analysis model. Besides, both of them achieve better results than the synthesis model no matter what value the balancing parameter is. Experiment shows that our proposed numerical algorithm constrained split augmented Lagrangian shrinkage algorithm for balanced model (C-SALSA-B converges faster than previously proposed algorithms accelerated proximal algorithm (APG and alternating directional method of multipliers for balanced model (ADMM-B.
Sparse encoding of automatic visual association in hippocampal networks
DEFF Research Database (Denmark)
Hulme, Oliver J; Skov, Martin; Chadwick, Martin J
2014-01-01
Intelligent action entails exploiting predictions about associations between elements of ones environment. The hippocampus and mediotemporal cortex are endowed with the network topology, physiology, and neurochemistry to automatically and sparsely code sensori-cognitive associations that can...
Sparse Pseudo Spectral Projection Methods with Directional Adaptation for Uncertainty Quantification
Winokur, J.
2015-12-19
We investigate two methods to build a polynomial approximation of a model output depending on some parameters. The two approaches are based on pseudo-spectral projection (PSP) methods on adaptively constructed sparse grids, and aim at providing a finer control of the resolution along two distinct subsets of model parameters. The control of the error along different subsets of parameters may be needed for instance in the case of a model depending on uncertain parameters and deterministic design variables. We first consider a nested approach where an independent adaptive sparse grid PSP is performed along the first set of directions only, and at each point a sparse grid is constructed adaptively in the second set of directions. We then consider the application of aPSP in the space of all parameters, and introduce directional refinement criteria to provide a tighter control of the projection error along individual dimensions. Specifically, we use a Sobol decomposition of the projection surpluses to tune the sparse grid adaptation. The behavior and performance of the two approaches are compared for a simple two-dimensional test problem and for a shock-tube ignition model involving 22 uncertain parameters and 3 design parameters. The numerical experiments indicate that whereas both methods provide effective means for tuning the quality of the representation along distinct subsets of parameters, PSP in the global parameter space generally requires fewer model evaluations than the nested approach to achieve similar projection error. In addition, the global approach is better suited for generalization to more than two subsets of directions.
2018-02-02
Traffic congestion at arterial intersections and freeway bottlenecks degrades the air quality and threatens the public health. Conventionally, air pollutants are monitored by sparsely-distributed Quality Assurance Air Monitoring Sites. Sparse mobile ...
Parallel and Scalable Sparse Basic Linear Algebra Subprograms
DEFF Research Database (Denmark)
Liu, Weifeng
and heterogeneous processors. The thesis compares the proposed methods with state-of-the-art approaches on six homogeneous and five heterogeneous processors from Intel, AMD and nVidia. Using in total 38 sparse matrices as a benchmark suite, the experimental results show that the proposed methods obtain significant...
SparseBeads data: benchmarking sparsity-regularized computed tomography
DEFF Research Database (Denmark)
Jørgensen, Jakob Sauer; Coban, Sophia B.; Lionheart, William R. B.
2017-01-01
-regularized reconstruction. A collection of 48 x-ray CT datasets called SparseBeads was designed for benchmarking SR reconstruction algorithms. Beadpacks comprising glass beads of five different sizes as well as mixtures were scanned in a micro-CT scanner to provide structured datasets with variable image sparsity levels...
Fast Estimation of Optimal Sparseness of Music Signals
DEFF Research Database (Denmark)
la Cour-Harbo, Anders
2006-01-01
We want to use a variety of sparseness measured applied to ‘the minimal L1 norm representation' of a music signal in an overcomplete dictionary as features for automatic classification of music. Unfortunately, the process of computing the optimal L1 norm representation is rather slow, and we...
Sampling of finite elements for sparse recovery in large scale 3D electrical impedance tomography
International Nuclear Information System (INIS)
Javaherian, Ashkan; Moeller, Knut; Soleimani, Manuchehr
2015-01-01
This study proposes a method to improve performance of sparse recovery inverse solvers in 3D electrical impedance tomography (3D EIT), especially when the volume under study contains small-sized inclusions, e.g. 3D imaging of breast tumours. Initially, a quadratic regularized inverse solver is applied in a fast manner with a stopping threshold much greater than the optimum. Based on assuming a fixed level of sparsity for the conductivity field, finite elements are then sampled via applying a compressive sensing (CS) algorithm to the rough blurred estimation previously made by the quadratic solver. Finally, a sparse inverse solver is applied solely to the sampled finite elements, with the solution to the CS as its initial guess. The results show the great potential of the proposed CS-based sparse recovery in improving accuracy of sparse solution to the large-size 3D EIT. (paper)
Diffusion Indexes with Sparse Loadings
DEFF Research Database (Denmark)
Kristensen, Johannes Tang
The use of large-dimensional factor models in forecasting has received much attention in the literature with the consensus being that improvements on forecasts can be achieved when comparing with standard models. However, recent contributions in the literature have demonstrated that care needs...... to the problem by using the LASSO as a variable selection method to choose between the possible variables and thus obtain sparse loadings from which factors or diffusion indexes can be formed. This allows us to build a more parsimonious factor model which is better suited for forecasting compared...... it to be an important alternative to PC....
Assessing the relationship between microwave vegetation optical depth and gross primary production
Teubner, Irene E.; Forkel, Matthias; Jung, Martin; Liu, Yi Y.; Miralles, Diego G.; Parinussa, Robert; van der Schalie, Robin; Vreugdenhil, Mariette; Schwalm, Christopher R.; Tramontana, Gianluca; Camps-Valls, Gustau; Dorigo, Wouter A.
2018-03-01
series than for ΔVOD or ΔVOD≥0 in case of sparsely to moderately vegetated areas and evergreen forests, while the opposite was true for deciduous forests. Results suggest that original VOD time series should be used jointly with changes in VOD for the estimation of GPP across biomes, which may further benefit from combining active and passive VOD data.
Global Convergence of Schubert’s Method for Solving Sparse Nonlinear Equations
Directory of Open Access Journals (Sweden)
Huiping Cao
2014-01-01
Full Text Available Schubert’s method is an extension of Broyden’s method for solving sparse nonlinear equations, which can preserve the zero-nonzero structure defined by the sparse Jacobian matrix and can retain many good properties of Broyden’s method. In particular, Schubert’s method has been proved to be locally and q-superlinearly convergent. In this paper, we globalize Schubert’s method by using a nonmonotone line search. Under appropriate conditions, we show that the proposed algorithm converges globally and superlinearly. Some preliminary numerical experiments are presented, which demonstrate that our algorithm is effective for large-scale problems.
Learning Joint-Sparse Codes for Calibration-Free Parallel MR Imaging.
Wang, Shanshan; Tan, Sha; Gao, Yuan; Liu, Qiegen; Ying, Leslie; Xiao, Taohui; Liu, Yuanyuan; Liu, Xin; Zheng, Hairong; Liang, Dong
2018-01-01
The integration of compressed sensing and parallel imaging (CS-PI) has shown an increased popularity in recent years to accelerate magnetic resonance (MR) imaging. Among them, calibration-free techniques have presented encouraging performances due to its capability in robustly handling the sensitivity information. Unfortunately, existing calibration-free methods have only explored joint-sparsity with direct analysis transform projections. To further exploit joint-sparsity and improve reconstruction accuracy, this paper proposes to Learn joINt-sparse coDes for caliBration-free parallEl mR imaGing (LINDBERG) by modeling the parallel MR imaging problem as an - - minimization objective with an norm constraining data fidelity, Frobenius norm enforcing sparse representation error and the mixed norm triggering joint sparsity across multichannels. A corresponding algorithm has been developed to alternatively update the sparse representation, sensitivity encoded images and K-space data. Then, the final image is produced as the square root of sum of squares of all channel images. Experimental results on both physical phantom and in vivo data sets show that the proposed method is comparable and even superior to state-of-the-art CS-PI reconstruction approaches. Specifically, LINDBERG has presented strong capability in suppressing noise and artifacts while reconstructing MR images from highly undersampled multichannel measurements.
Atmospheric inverse modeling via sparse reconstruction
Hase, Nils; Miller, Scot M.; Maaß, Peter; Notholt, Justus; Palm, Mathias; Warneke, Thorsten
2017-10-01
Many applications in atmospheric science involve ill-posed inverse problems. A crucial component of many inverse problems is the proper formulation of a priori knowledge about the unknown parameters. In most cases, this knowledge is expressed as a Gaussian prior. This formulation often performs well at capturing smoothed, large-scale processes but is often ill equipped to capture localized structures like large point sources or localized hot spots. Over the last decade, scientists from a diverse array of applied mathematics and engineering fields have developed sparse reconstruction techniques to identify localized structures. In this study, we present a new regularization approach for ill-posed inverse problems in atmospheric science. It is based on Tikhonov regularization with sparsity constraint and allows bounds on the parameters. We enforce sparsity using a dictionary representation system. We analyze its performance in an atmospheric inverse modeling scenario by estimating anthropogenic US methane (CH4) emissions from simulated atmospheric measurements. Different measures indicate that our sparse reconstruction approach is better able to capture large point sources or localized hot spots than other methods commonly used in atmospheric inversions. It captures the overall signal equally well but adds details on the grid scale. This feature can be of value for any inverse problem with point or spatially discrete sources. We show an example for source estimation of synthetic methane emissions from the Barnett shale formation.
Framing U-Net via Deep Convolutional Framelets: Application to Sparse-View CT.
Han, Yoseob; Ye, Jong Chul
2018-06-01
X-ray computed tomography (CT) using sparse projection views is a recent approach to reduce the radiation dose. However, due to the insufficient projection views, an analytic reconstruction approach using the filtered back projection (FBP) produces severe streaking artifacts. Recently, deep learning approaches using large receptive field neural networks such as U-Net have demonstrated impressive performance for sparse-view CT reconstruction. However, theoretical justification is still lacking. Inspired by the recent theory of deep convolutional framelets, the main goal of this paper is, therefore, to reveal the limitation of U-Net and propose new multi-resolution deep learning schemes. In particular, we show that the alternative U-Net variants such as dual frame and tight frame U-Nets satisfy the so-called frame condition which makes them better for effective recovery of high frequency edges in sparse-view CT. Using extensive experiments with real patient data set, we demonstrate that the new network architectures provide better reconstruction performance.
A FPC-ROOT Algorithm for 2D-DOA Estimation in Sparse Array
Directory of Open Access Journals (Sweden)
Wenhao Zeng
2016-01-01
Full Text Available To improve the performance of two-dimensional direction-of-arrival (2D DOA estimation in sparse array, this paper presents a Fixed Point Continuation Polynomial Roots (FPC-ROOT algorithm. Firstly, a signal model for DOA estimation is established based on matrix completion and it can be proved that the proposed model meets Null Space Property (NSP. Secondly, left and right singular vectors of received signals matrix are achieved using the matrix completion algorithm. Finally, 2D DOA estimation can be acquired through solving the polynomial roots. The proposed algorithm can achieve high accuracy of 2D DOA estimation in sparse array, without solving autocorrelation matrix of received signals and scanning of two-dimensional spectral peak. Besides, it decreases the number of antennas and lowers computational complexity and meanwhile avoids the angle ambiguity problem. Computer simulations demonstrate that the proposed FPC-ROOT algorithm can obtain the 2D DOA estimation precisely in sparse array.
Seasonal variation of carbon fluxes in a sparse savanna in semi arid Sudan.
Ardö, Jonas; Mölder, Meelis; El-Tahir, Bashir Awad; Elkhidir, Hatim Abdalla Mohammed
2008-12-01
Large spatial, seasonal and annual variability of major drivers of the carbon cycle (precipitation, temperature, fire regime and nutrient availability) are common in the Sahel region. This causes large variability in net ecosystem exchange and in vegetation productivity, the subsistence basis for a major part of the rural population in Sahel. This study compares the 2005 dry and wet season fluxes of CO2 for a grass land/sparse savanna site in semi arid Sudan and relates these fluxes to water availability and incoming photosynthetic photon flux density (PPFD). Data from this site could complement the current sparse observation network in Africa, a continent where climatic change could significantly impact the future and which constitute a weak link in our understanding of the global carbon cycle. The dry season (represented by Julian day 35-46, February 2005) was characterized by low soil moisture availability, low evapotranspiration and a high vapor pressure deficit. The mean daily NEE (net ecosystem exchange, Eq. 1) was -14.7 mmol d-1 for the 12 day period (negative numbers denote sinks, i.e. flux from the atmosphere to the biosphere). The water use efficiency (WUE) was 1.6 mmol CO2 mol H2O-1 and the light use efficiency (LUE) was 0.95 mmol CO2 mol PPFD-1. Photosynthesis is a weak, but linear function of PPFD. The wet season (represented by Julian day 266-273, September 2005) was, compared to the dry season, characterized by slightly higher soil moisture availability, higher evapotranspiration and a slightly lower vapor pressure deficit. The mean daily NEE was -152 mmol d-1 for the 8 day period. The WUE was lower, 0.97 mmol CO2 mol H2O-1 and the LUE was higher, 7.2 mumol CO2 mmol PPFD-1 during the wet season compared to the dry season. During the wet season photosynthesis increases with PPFD to about 1600 mumol m-2s-1 and then levels off. Based on data collected during two short periods, the studied ecosystem was a sink of carbon both during the dry and wet season
Seasonal variation of carbon fluxes in a sparse savanna in semi arid Sudan
Directory of Open Access Journals (Sweden)
El-Tahir Bashir
2008-12-01
Full Text Available Abstract Background Large spatial, seasonal and annual variability of major drivers of the carbon cycle (precipitation, temperature, fire regime and nutrient availability are common in the Sahel region. This causes large variability in net ecosystem exchange and in vegetation productivity, the subsistence basis for a major part of the rural population in Sahel. This study compares the 2005 dry and wet season fluxes of CO2 for a grass land/sparse savanna site in semi arid Sudan and relates these fluxes to water availability and incoming photosynthetic photon flux density (PPFD. Data from this site could complement the current sparse observation network in Africa, a continent where climatic change could significantly impact the future and which constitute a weak link in our understanding of the global carbon cycle. Results The dry season (represented by Julian day 35–46, February 2005 was characterized by low soil moisture availability, low evapotranspiration and a high vapor pressure deficit. The mean daily NEE (net ecosystem exchange, Eq. 1 was -14.7 mmol d-1 for the 12 day period (negative numbers denote sinks, i.e. flux from the atmosphere to the biosphere. The water use efficiency (WUE was 1.6 mmol CO2 mol H2O-1 and the light use efficiency (LUE was 0.95 mmol CO2 mol PPFD-1. Photosynthesis is a weak, but linear function of PPFD. The wet season (represented by Julian day 266–273, September 2005 was, compared to the dry season, characterized by slightly higher soil moisture availability, higher evapotranspiration and a slightly lower vapor pressure deficit. The mean daily NEE was -152 mmol d-1 for the 8 day period. The WUE was lower, 0.97 mmol CO2 mol H2O-1 and the LUE was higher, 7.2 μmol CO2 mmol PPFD-1 during the wet season compared to the dry season. During the wet season photosynthesis increases with PPFD to about 1600 μmol m-2s-1 and then levels off. Conclusion Based on data collected during two short periods, the studied ecosystem
Dynamic Stochastic Superresolution of sparsely observed turbulent systems
International Nuclear Information System (INIS)
Branicki, M.; Majda, A.J.
2013-01-01
Real-time capture of the relevant features of the unresolved turbulent dynamics of complex natural systems from sparse noisy observations and imperfect models is a notoriously difficult problem. The resulting lack of observational resolution and statistical accuracy in estimating the important turbulent processes, which intermittently send significant energy to the large-scale fluctuations, hinders efficient parameterization and real-time prediction using discretized PDE models. This issue is particularly subtle and important when dealing with turbulent geophysical systems with an vast range of interacting spatio-temporal scales and rough energy spectra near the mesh scale of numerical models. Here, we introduce and study a suite of general Dynamic Stochastic Superresolution (DSS) algorithms and show that, by appropriately filtering sparse regular observations with the help of cheap stochastic exactly solvable models, one can derive stochastically ‘superresolved’ velocity fields and gain insight into the important characteristics of the unresolved dynamics, including the detection of the so-called black swans. The DSS algorithms operate in Fourier domain and exploit the fact that the coarse observation network aliases high-wavenumber information into the resolved waveband. It is shown that these cheap algorithms are robust and have significant skill on a test bed of turbulent solutions from realistic nonlinear turbulent spatially extended systems in the presence of a significant model error. In particular, the DSS algorithms are capable of successfully capturing time-localized extreme events in the unresolved modes, and they provide good and robust skill for recovery of the unresolved processes in terms of pattern correlation. Moreover, we show that DSS improves the skill for recovering the primary modes associated with the sparse observation mesh which is equally important in applications. The skill of the various DSS algorithms depends on the energy spectrum
Li, Yunyi; Zhang, Jie; Fan, Shangang; Yang, Jie; Xiong, Jian; Cheng, Xiefeng; Sari, Hikmet; Adachi, Fumiyuki; Gui, Guan
2017-12-15
Both L 1/2 and L 2/3 are two typical non-convex regularizations of L p (0dictionary sparse transform strategies for the two typical cases p∈{1/2, 2/3} based on an iterative Lp thresholding algorithm and then proposes a sparse adaptive iterative-weighted L p thresholding algorithm (SAITA). Moreover, a simple yet effective regularization parameter is proposed to weight each sub-dictionary-based L p regularizer. Simulation results have shown that the proposed SAITA not only performs better than the corresponding L₁ algorithms but can also obtain a better recovery performance and achieve faster convergence than the conventional single-dictionary sparse transform-based L p case. Moreover, we conduct some applications about sparse image recovery and obtain good results by comparison with relative work.
Robust visual tracking via structured multi-task sparse learning
Zhang, Tianzhu; Ghanem, Bernard; Liu, Si; Ahuja, Narendra
2012-01-01
In this paper, we formulate object tracking in a particle filter framework as a structured multi-task sparse learning problem, which we denote as Structured Multi-Task Tracking (S-MTT). Since we model particles as linear combinations of dictionary
Stability Analysis on Sparsely Encoded Associative Memory with Short-Term Synaptic Dynamics
Xu, Muyuan; Katori, Yuichi; Aihara, Kazuyuki
This study investigates the stability of sparsely encoded associative memory in a network composed of stochastic neurons. The incorporation of short-term synaptic dynamics significantly changes the stability with respect to synaptic properties. Various states including static and oscillatory states are found in the network dynamics. Specifically, the sparseness of memory patterns raises the problem of spurious states. A mean field model is used to analyze the detailed structure in the stability and show that the performance of memory retrieval is recovered by appropriate feedback.
DEFF Research Database (Denmark)
Sharifzadeh, Sara; Skytte, Jacob Lercke; Nielsen, Otto Højager Attermann
2012-01-01
Statistical solutions find wide spread use in food and medicine quality control. We investigate the effect of different regression and sparse regression methods for a viscosity estimation problem using the spectro-temporal features from new Sub-Surface Laser Scattering (SLS) vision system. From...... with sparse LAR, lasso and Elastic Net (EN) sparse regression methods. Due to the inconsistent measurement condition, Locally Weighted Scatter plot Smoothing (Loess) has been employed to alleviate the undesired variation in the estimated viscosity. The experimental results of applying different methods show...
Directory of Open Access Journals (Sweden)
Yujie Li
2018-01-01
Full Text Available Analysis sparse representation has recently emerged as an alternative approach to the synthesis sparse model. Most existing algorithms typically employ the l0-norm, which is generally NP-hard. Other existing algorithms employ the l1-norm to relax the l0-norm, which sometimes cannot promote adequate sparsity. Most of these existing algorithms focus on general signals and are not suitable for nonnegative signals. However, many signals are necessarily nonnegative such as spectral data. In this paper, we present a novel and efficient analysis dictionary learning algorithm for nonnegative signals with the determinant-type sparsity measure which is convex and differentiable. The analysis sparse representation can be cast in three subproblems, sparse coding, dictionary update, and signal update, because the determinant-type sparsity measure would result in a complex nonconvex optimization problem, which cannot be easily solved by standard convex optimization methods. Therefore, in the proposed algorithms, we use a difference of convex (DC programming scheme for solving the nonconvex problem. According to our theoretical analysis and simulation study, the main advantage of the proposed algorithm is its greater dictionary learning efficiency, particularly compared with state-of-the-art algorithms. In addition, our proposed algorithm performs well in image denoising.
Efficient coordinated recovery of sparse channels in massive MIMO
Masood, Mudassir; Afify, Laila H.; Al-Naffouri, Tareq Y.
2015-01-01
on this approach have been developed that perform Bayesian estimates of sparse channels even when the prior is non-Gaussian or unknown. Neighboring antennas share among each other their beliefs about the locations of active channel taps to perform estimation
Multiple instance learning tracking method with local sparse representation
Xie, Chengjun; Tan, Jieqing; Chen, Peng; Zhang, Jie; Helg, Lei
2013-01-01
as training data for the MIL framework. First, local image patches of a target object are represented as sparse codes with an overcomplete dictionary, where the adaptive representation can be helpful in overcoming partial occlusion in object tracking. Then MIL
Visual properties and memorising scenes: Effects of image-space sparseness and uniformity.
Lukavský, Jiří; Děchtěrenko, Filip
2017-10-01
Previous studies have demonstrated that humans have a remarkable capacity to memorise a large number of scenes. The research on memorability has shown that memory performance can be predicted by the content of an image. We explored how remembering an image is affected by the image properties within the context of the reference set, including the extent to which it is different from its neighbours (image-space sparseness) and if it belongs to the same category as its neighbours (uniformity). We used a reference set of 2,048 scenes (64 categories), evaluated pairwise scene similarity using deep features from a pretrained convolutional neural network (CNN), and calculated the image-space sparseness and uniformity for each image. We ran three memory experiments, varying the memory workload with experiment length and colour/greyscale presentation. We measured the sensitivity and criterion value changes as a function of image-space sparseness and uniformity. Across all three experiments, we found separate effects of 1) sparseness on memory sensitivity, and 2) uniformity on the recognition criterion. People better remembered (and correctly rejected) images that were more separated from others. People tended to make more false alarms and fewer miss errors in images from categorically uniform portions of the image-space. We propose that both image-space properties affect human decisions when recognising images. Additionally, we found that colour presentation did not yield better memory performance over grayscale images.
Enhancement of snow cover change detection with sparse representation and dictionary learning
Varade, D.; Dikshit, O.
2014-11-01
Sparse representation and decoding is often used for denoising images and compression of images with respect to inherent features. In this paper, we adopt a methodology incorporating sparse representation of a snow cover change map using the K-SVD trained dictionary and sparse decoding to enhance the change map. The pixels often falsely characterized as "changes" are eliminated using this approach. The preliminary change map was generated using differenced NDSI or S3 maps in case of Resourcesat-2 and Landsat 8 OLI imagery respectively. These maps are extracted into patches for compressed sensing using Discrete Cosine Transform (DCT) to generate an initial dictionary which is trained by the K-SVD approach. The trained dictionary is used for sparse coding of the change map using the Orthogonal Matching Pursuit (OMP) algorithm. The reconstructed change map incorporates a greater degree of smoothing and represents the features (snow cover changes) with better accuracy. The enhanced change map is segmented using kmeans to discriminate between the changed and non-changed pixels. The segmented enhanced change map is compared, firstly with the difference of Support Vector Machine (SVM) classified NDSI maps and secondly with a reference data generated as a mask by visual interpretation of the two input images. The methodology is evaluated using multi-spectral datasets from Resourcesat-2 and Landsat-8. The k-hat statistic is computed to determine the accuracy of the proposed approach.
Li, Zheng-Zhou; Chen, Jing; Hou, Qian; Fu, Hong-Xia; Dai, Zhen; Jin, Gang; Li, Ru-Zhang; Liu, Chang-Ju
2014-05-27
It is difficult for structural over-complete dictionaries such as the Gabor function and discriminative over-complete dictionary, which are learned offline and classified manually, to represent natural images with the goal of ideal sparseness and to enhance the difference between background clutter and target signals. This paper proposes an infrared dim target detection approach based on sparse representation on a discriminative over-complete dictionary. An adaptive morphological over-complete dictionary is trained and constructed online according to the content of infrared image by K-singular value decomposition (K-SVD) algorithm. Then the adaptive morphological over-complete dictionary is divided automatically into a target over-complete dictionary describing target signals, and a background over-complete dictionary embedding background by the criteria that the atoms in the target over-complete dictionary could be decomposed more sparsely based on a Gaussian over-complete dictionary than the one in the background over-complete dictionary. This discriminative over-complete dictionary can not only capture significant features of background clutter and dim targets better than a structural over-complete dictionary, but also strengthens the sparse feature difference between background and target more efficiently than a discriminative over-complete dictionary learned offline and classified manually. The target and background clutter can be sparsely decomposed over their corresponding over-complete dictionaries, yet couldn't be sparsely decomposed based on their opposite over-complete dictionary, so their residuals after reconstruction by the prescribed number of target and background atoms differ very visibly. Some experiments are included and the results show that this proposed approach could not only improve the sparsity more efficiently, but also enhance the performance of small target detection more effectively.
Directory of Open Access Journals (Sweden)
Zheng-Zhou Li
2014-05-01
Full Text Available It is difficult for structural over-complete dictionaries such as the Gabor function and discriminative over-complete dictionary, which are learned offline and classified manually, to represent natural images with the goal of ideal sparseness and to enhance the difference between background clutter and target signals. This paper proposes an infrared dim target detection approach based on sparse representation on a discriminative over-complete dictionary. An adaptive morphological over-complete dictionary is trained and constructed online according to the content of infrared image by K-singular value decomposition (K-SVD algorithm. Then the adaptive morphological over-complete dictionary is divided automatically into a target over-complete dictionary describing target signals, and a background over-complete dictionary embedding background by the criteria that the atoms in the target over-complete dictionary could be decomposed more sparsely based on a Gaussian over-complete dictionary than the one in the background over-complete dictionary. This discriminative over-complete dictionary can not only capture significant features of background clutter and dim targets better than a structural over-complete dictionary, but also strengthens the sparse feature difference between background and target more efficiently than a discriminative over-complete dictionary learned offline and classified manually. The target and background clutter can be sparsely decomposed over their corresponding over-complete dictionaries, yet couldn’t be sparsely decomposed based on their opposite over-complete dictionary, so their residuals after reconstruction by the prescribed number of target and background atoms differ very visibly. Some experiments are included and the results show that this proposed approach could not only improve the sparsity more efficiently, but also enhance the performance of small target detection more effectively.
Vreugdenhil, Mariette; de Jeu, Richard; Wagner, Wolfgang; Dorigo, Wouter; Hahn, Sebastian; Bloeschl, Guenter
2013-04-01
Vegetation and its water content affect active and passive microwave soil moisture retrievals and need to be taken into account in such retrieval methodologies. This study compares the vegetation parameterisation that is used in the TU-Wien soil moisture retrieval algorithm to other vegetation products, such as the Vegetation Optical Depth (VOD), Net Primary Production (NPP) and Leaf Area Index (LAI). When only considering the retrieval algorithm for active microwaves, which was developed by the TU-Wien, the effect of vegetation on the backscattering coefficient is described by the so-called slope [1]. The slope is the first derivative of the backscattering coefficient in relation to the incidence angle. Soil surface backscatter normally decreases quite rapidly with the incidence angle over bare or sparsely vegetated soils, whereas the contribution of dense vegetation is fairly uniform over a large range of incidence angles. Consequently, the slope becomes less steep with increasing vegetation. Because the slope is a derivate of noisy backscatter measurements, it is characterised by an even higher level of noise. Therefore, it is averaged over several years assuming that the state of the vegetation doesn't change inter-annually. The slope is compared to three dynamic vegetation products over Australia, the VOD, NPP and LAI. The VOD was retrieved from AMSR-E passive microwave data using the VUA-NASA retrieval algorithm and provides information on vegetation with a global coverage of approximately every two days [2]. LAI is defined as half the developed area of photosynthetically active elements of the vegetation per unit horizontal ground area. In this study LAI is used from the Geoland2 products derived from SPOT Vegetation*. The NPP is the net rate at which plants build up carbon through photosynthesis and is a model-based estimate from the BiosEquil model [3, 4]. Results show that VOD and slope correspond reasonably well over vegetated areas, whereas in arid
CT Image Sequence Restoration Based on Sparse and Low-Rank Decomposition
Gou, Shuiping; Wang, Yueyue; Wang, Zhilong; Peng, Yong; Zhang, Xiaopeng; Jiao, Licheng; Wu, Jianshe
2013-01-01
Blurry organ boundaries and soft tissue structures present a major challenge in biomedical image restoration. In this paper, we propose a low-rank decomposition-based method for computed tomography (CT) image sequence restoration, where the CT image sequence is decomposed into a sparse component and a low-rank component. A new point spread function of Weiner filter is employed to efficiently remove blur in the sparse component; a wiener filtering with the Gaussian PSF is used to recover the average image of the low-rank component. And then we get the recovered CT image sequence by combining the recovery low-rank image with all recovery sparse image sequence. Our method achieves restoration results with higher contrast, sharper organ boundaries and richer soft tissue structure information, compared with existing CT image restoration methods. The robustness of our method was assessed with numerical experiments using three different low-rank models: Robust Principle Component Analysis (RPCA), Linearized Alternating Direction Method with Adaptive Penalty (LADMAP) and Go Decomposition (GoDec). Experimental results demonstrated that the RPCA model was the most suitable for the small noise CT images whereas the GoDec model was the best for the large noisy CT images. PMID:24023764
Nonlocal low-rank and sparse matrix decomposition for spectral CT reconstruction
Niu, Shanzhou; Yu, Gaohang; Ma, Jianhua; Wang, Jing
2018-02-01
Spectral computed tomography (CT) has been a promising technique in research and clinics because of its ability to produce improved energy resolution images with narrow energy bins. However, the narrow energy bin image is often affected by serious quantum noise because of the limited number of photons used in the corresponding energy bin. To address this problem, we present an iterative reconstruction method for spectral CT using nonlocal low-rank and sparse matrix decomposition (NLSMD), which exploits the self-similarity of patches that are collected in multi-energy images. Specifically, each set of patches can be decomposed into a low-rank component and a sparse component, and the low-rank component represents the stationary background over different energy bins, while the sparse component represents the rest of the different spectral features in individual energy bins. Subsequently, an effective alternating optimization algorithm was developed to minimize the associated objective function. To validate and evaluate the NLSMD method, qualitative and quantitative studies were conducted by using simulated and real spectral CT data. Experimental results show that the NLSMD method improves spectral CT images in terms of noise reduction, artifact suppression and resolution preservation.
A novel integrated circuit for semiconductor radiation detectors with sparse readout
International Nuclear Information System (INIS)
Zhang Yacong; Chen Zhognjian; Lu Wengao; Zhao Baoying; Ji Lijiu
2008-01-01
A novel fully integrated CMOS readout circuit for semiconductor radiation detector with sparse readout is presented. The new sparse scheme is: when one channel is being read out, the trigger signal from other channels is delayed and then processed. Therefore, the dead time is reduced and so is the error rate. Besides sparse readout, sequential readout is also allowed, which means the analog voltages and addresses of all the channels are read out sequentially once there is a channel triggered. The circuit comprises Charge Sensitive Amplifier (CSA), pulse shaper, peak detect and hold circuit, and digital logic. A test chip of four channels designed in a 0.5 μ DPTM CMOS technology has been taped out. The results of post simulation indicate that the gain is 79.3 mV/fC with a linearity of 99.92%. The power dissipation is 4 mW per channel. Theory analysis and calculation shows that the error probability is approximately 2.5%, which means a reduction of about 37% is obtained compared with the traditional scanning scheme, assuming a 16-channel system with a particle rate of 100 k/s per channel. (authors)
The impact of improved sparse linear solvers on industrial engineering applications
Energy Technology Data Exchange (ETDEWEB)
Heroux, M. [Cray Research, Inc., Eagan, MN (United States); Baddourah, M.; Poole, E.L.; Yang, Chao Wu
1996-12-31
There are usually many factors that ultimately determine the quality of computer simulation for engineering applications. Some of the most important are the quality of the analytical model and approximation scheme, the accuracy of the input data and the capability of the computing resources. However, in many engineering applications the characteristics of the sparse linear solver are the key factors in determining how complex a problem a given application code can solve. Therefore, the advent of a dramatically improved solver often brings with it dramatic improvements in our ability to do accurate and cost effective computer simulations. In this presentation we discuss the current status of sparse iterative and direct solvers in several key industrial CFD and structures codes, and show the impact that recent advances in linear solvers have made on both our ability to perform challenging simulations and the cost of those simulations. We also present some of the current challenges we have and the constraints we face in trying to improve these solvers. Finally, we discuss future requirements for sparse linear solvers on high performance architectures and try to indicate the opportunities that exist if we can develop even more improvements in linear solver capabilities.
OFDM receiver for fast time-varying channels using block-sparse Bayesian learning
DEFF Research Database (Denmark)
Barbu, Oana-Elena; Manchón, Carles Navarro; Rom, Christian
2016-01-01
characterized with a basis expansion model using a small number of terms. As a result, the channel estimation problem is posed as that of estimating a vector of complex coefficients that exhibits a block-sparse structure, which we solve with tools from block-sparse Bayesian learning. Using variational Bayesian...... inference, we embed the channel estimator in a receiver structure that performs iterative channel and noise precision estimation, intercarrier interference cancellation, detection and decoding. Simulation results illustrate the superior performance of the proposed receiver over state-of-art receivers....
Robust Visual Tracking Via Consistent Low-Rank Sparse Learning
Zhang, Tianzhu; Liu, Si; Ahuja, Narendra; Yang, Ming-Hsuan; Ghanem, Bernard
2014-01-01
and the low-rank minimization problem for learning joint sparse representations can be efficiently solved by a sequence of closed form update operations. We evaluate the proposed CLRST algorithm against 14 state-of-the-art tracking methods on a set of 25
Chung, Moo K.; Kim, Seung-Goo; Schaefer, Stacey M.; van Reekum, Carien M.; Peschke-Schmitz, Lara; Sutterer, Matthew J.; Davidson, Richard J.
2014-03-01
The sparse regression framework has been widely used in medical image processing and analysis. However, it has been rarely used in anatomical studies. We present a sparse shape modeling framework using the Laplace- Beltrami (LB) eigenfunctions of the underlying shape and show its improvement of statistical power. Tradition- ally, the LB-eigenfunctions are used as a basis for intrinsically representing surface shapes as a form of Fourier descriptors. To reduce high frequency noise, only the first few terms are used in the expansion and higher frequency terms are simply thrown away. However, some lower frequency terms may not necessarily contribute significantly in reconstructing the surfaces. Motivated by this idea, we present a LB-based method to filter out only the significant eigenfunctions by imposing a sparse penalty. For dense anatomical data such as deformation fields on a surface mesh, the sparse regression behaves like a smoothing process, which will reduce the error of incorrectly detecting false negatives. Hence the statistical power improves. The sparse shape model is then applied in investigating the influence of age on amygdala and hippocampus shapes in the normal population. The advantage of the LB sparse framework is demonstrated by showing the increased statistical power.
Locality-preserving sparse representation-based classification in hyperspectral imagery
Gao, Lianru; Yu, Haoyang; Zhang, Bing; Li, Qingting
2016-10-01
This paper proposes to combine locality-preserving projections (LPP) and sparse representation (SR) for hyperspectral image classification. The LPP is first used to reduce the dimensionality of all the training and testing data by finding the optimal linear approximations to the eigenfunctions of the Laplace Beltrami operator on the manifold, where the high-dimensional data lies. Then, SR codes the projected testing pixels as sparse linear combinations of all the training samples to classify the testing pixels by evaluating which class leads to the minimum approximation error. The integration of LPP and SR represents an innovative contribution to the literature. The proposed approach, called locality-preserving SR-based classification, addresses the imbalance between high dimensionality of hyperspectral data and the limited number of training samples. Experimental results on three real hyperspectral data sets demonstrate that the proposed approach outperforms the original counterpart, i.e., SR-based classification.
Permuting sparse rectangular matrices into block-diagonal form
Energy Technology Data Exchange (ETDEWEB)
Aykanat, Cevdet; Pinar, Ali; Catalyurek, Umit V.
2002-12-09
This work investigates the problem of permuting a sparse rectangular matrix into block diagonal form. Block diagonal form of a matrix grants an inherent parallelism for the solution of the deriving problem, as recently investigated in the context of mathematical programming, LU factorization and QR factorization. We propose graph and hypergraph models to represent the nonzero structure of a matrix, which reduce the permutation problem to those of graph partitioning by vertex separator and hypergraph partitioning, respectively. Besides proposing the models to represent sparse matrices and investigating related combinatorial problems, we provide a detailed survey of relevant literature to bridge the gap between different societies, investigate existing techniques for partitioning and propose new ones, and finally present a thorough empirical study of these techniques. Our experiments on a wide range of matrices, using state-of-the-art graph and hypergraph partitioning tools MeTiS and PaT oH, revealed that the proposed methods yield very effective solutions both in terms of solution quality and run time.
Image Classification Based on Convolutional Denoising Sparse Autoencoder
Directory of Open Access Journals (Sweden)
Shuangshuang Chen
2017-01-01
Full Text Available Image classification aims to group images into corresponding semantic categories. Due to the difficulties of interclass similarity and intraclass variability, it is a challenging issue in computer vision. In this paper, an unsupervised feature learning approach called convolutional denoising sparse autoencoder (CDSAE is proposed based on the theory of visual attention mechanism and deep learning methods. Firstly, saliency detection method is utilized to get training samples for unsupervised feature learning. Next, these samples are sent to the denoising sparse autoencoder (DSAE, followed by convolutional layer and local contrast normalization layer. Generally, prior in a specific task is helpful for the task solution. Therefore, a new pooling strategy—spatial pyramid pooling (SPP fused with center-bias prior—is introduced into our approach. Experimental results on the common two image datasets (STL-10 and CIFAR-10 demonstrate that our approach is effective in image classification. They also demonstrate that none of these three components: local contrast normalization, SPP fused with center-prior, and l2 vector normalization can be excluded from our proposed approach. They jointly improve image representation and classification performance.
iSAP: Interactive Sparse Astronomical Data Analysis Packages
Fourt, O.; Starck, J.-L.; Sureau, F.; Bobin, J.; Moudden, Y.; Abrial, P.; Schmitt, J.
2013-03-01
iSAP consists of three programs, written in IDL, which together are useful for spherical data analysis. MR/S (MultiResolution on the Sphere) contains routines for wavelet, ridgelet and curvelet transform on the sphere, and applications such denoising on the sphere using wavelets and/or curvelets, Gaussianity tests and Independent Component Analysis on the Sphere. MR/S has been designed for the PLANCK project, but can be used for many other applications. SparsePol (Polarized Spherical Wavelets and Curvelets) has routines for polarized wavelet, polarized ridgelet and polarized curvelet transform on the sphere, and applications such denoising on the sphere using wavelets and/or curvelets, Gaussianity tests and blind source separation on the Sphere. SparsePol has been designed for the PLANCK project. MS-VSTS (Multi-Scale Variance Stabilizing Transform on the Sphere), designed initially for the FERMI project, is useful for spherical mono-channel and multi-channel data analysis when the data are contaminated by a Poisson noise. It contains routines for wavelet/curvelet denoising, wavelet deconvolution, multichannel wavelet denoising and deconvolution.
Abdelfattah, Ahmad
2016-05-23
Simulations of many multi-component PDE-based applications, such as petroleum reservoirs or reacting flows, are dominated by the solution, on each time step and within each Newton step, of large sparse linear systems. The standard solver is a preconditioned Krylov method. Along with application of the preconditioner, memory-bound Sparse Matrix-Vector Multiplication (SpMV) is the most time-consuming operation in such solvers. Multi-species models produce Jacobians with a dense block structure, where the block size can be as large as a few dozen. Failing to exploit this dense block structure vastly underutilizes hardware capable of delivering high performance on dense BLAS operations. This paper presents a GPU-accelerated SpMV kernel for block-sparse matrices. Dense matrix-vector multiplications within the sparse-block structure leverage optimization techniques from the KBLAS library, a high performance library for dense BLAS kernels. The design ideas of KBLAS can be applied to block-sparse matrices. Furthermore, a technique is proposed to balance the workload among thread blocks when there are large variations in the lengths of nonzero rows. Multi-GPU performance is highlighted. The proposed SpMV kernel outperforms existing state-of-the-art implementations using matrices with real structures from different applications. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.
Abdelfattah, Ahmad; Ltaief, Hatem; Keyes, David E.; Dongarra, Jack
2016-01-01
Simulations of many multi-component PDE-based applications, such as petroleum reservoirs or reacting flows, are dominated by the solution, on each time step and within each Newton step, of large sparse linear systems. The standard solver is a preconditioned Krylov method. Along with application of the preconditioner, memory-bound Sparse Matrix-Vector Multiplication (SpMV) is the most time-consuming operation in such solvers. Multi-species models produce Jacobians with a dense block structure, where the block size can be as large as a few dozen. Failing to exploit this dense block structure vastly underutilizes hardware capable of delivering high performance on dense BLAS operations. This paper presents a GPU-accelerated SpMV kernel for block-sparse matrices. Dense matrix-vector multiplications within the sparse-block structure leverage optimization techniques from the KBLAS library, a high performance library for dense BLAS kernels. The design ideas of KBLAS can be applied to block-sparse matrices. Furthermore, a technique is proposed to balance the workload among thread blocks when there are large variations in the lengths of nonzero rows. Multi-GPU performance is highlighted. The proposed SpMV kernel outperforms existing state-of-the-art implementations using matrices with real structures from different applications. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.
Dentate Gyrus circuitry features improve performance of sparse approximation algorithms.
Directory of Open Access Journals (Sweden)
Panagiotis C Petrantonakis
Full Text Available Memory-related activity in the Dentate Gyrus (DG is characterized by sparsity. Memory representations are seen as activated neuronal populations of granule cells, the main encoding cells in DG, which are estimated to engage 2-4% of the total population. This sparsity is assumed to enhance the ability of DG to perform pattern separation, one of the most valuable contributions of DG during memory formation. In this work, we investigate how features of the DG such as its excitatory and inhibitory connectivity diagram can be used to develop theoretical algorithms performing Sparse Approximation, a widely used strategy in the Signal Processing field. Sparse approximation stands for the algorithmic identification of few components from a dictionary that approximate a certain signal. The ability of DG to achieve pattern separation by sparsifing its representations is exploited here to improve the performance of the state of the art sparse approximation algorithm "Iterative Soft Thresholding" (IST by adding new algorithmic features inspired by the DG circuitry. Lateral inhibition of granule cells, either direct or indirect, via mossy cells, is shown to enhance the performance of the IST. Apart from revealing the potential of DG-inspired theoretical algorithms, this work presents new insights regarding the function of particular cell types in the pattern separation task of the DG.
On the role of sparseness in the evolution of modularity in gene regulatory networks.
Espinosa-Soto, Carlos
2018-05-01
Modularity is a widespread property in biological systems. It implies that interactions occur mainly within groups of system elements. A modular arrangement facilitates adjustment of one module without perturbing the rest of the system. Therefore, modularity of developmental mechanisms is a major factor for evolvability, the potential to produce beneficial variation from random genetic change. Understanding how modularity evolves in gene regulatory networks, that create the distinct gene activity patterns that characterize different parts of an organism, is key to developmental and evolutionary biology. One hypothesis for the evolution of modules suggests that interactions between some sets of genes become maladaptive when selection favours additional gene activity patterns. The removal of such interactions by selection would result in the formation of modules. A second hypothesis suggests that modularity evolves in response to sparseness, the scarcity of interactions within a system. Here I simulate the evolution of gene regulatory networks and analyse diverse experimentally sustained networks to study the relationship between sparseness and modularity. My results suggest that sparseness alone is neither sufficient nor necessary to explain modularity in gene regulatory networks. However, sparseness amplifies the effects of forms of selection that, like selection for additional gene activity patterns, already produce an increase in modularity. That evolution of new gene activity patterns is frequent across evolution also supports that it is a major factor in the evolution of modularity. That sparseness is widespread across gene regulatory networks indicates that it may have facilitated the evolution of modules in a wide variety of cases.
Sun, Guangling
2012-01-01
A framework of demosaicing and superresolution for color filter array (CFA) via residual image reconstruction and sparse representation is presented.Given the intermediate image produced by certain demosaicing and interpolation technique, a residual image between the final reconstruction image and the intermediate image is reconstructed using sparse representation.The final reconstruction image has richer edges and details than that of the intermediate image. Specifically, a generic dictionar...
DEFF Research Database (Denmark)
Karaman, Ibrahim; Nørskov, Natalja; Yde, Christian Clement
2015-01-01
The objective of this study was to implement a multivariate method which analyzes multi-block metabolomics data and performs variable selection in order to discover potential biomarkers, simultaneously. We call this method sparse multi-block partial least squares regression (Sparse MBPLSR). To ac...
International Nuclear Information System (INIS)
Gratz, Marcel; Quick, Harald H.; Schlamann, Marc; Goericke, Sophia; Maderwald, Stefan
2017-01-01
To assess the image quality of sparsely sampled contrast-enhanced MR angiography (sparse CE-MRA) providing high spatial resolution and whole-head coverage. Twenty-three patients scheduled for contrast-enhanced MR imaging of the head, (N = 19 with intracranial pathologies, N = 9 with vascular diseases), were included. Sparse CE-MRA at 3 Tesla was conducted using a single dose of contrast agent. Two neuroradiologists independently evaluated the data regarding vascular visibility and diagnostic value of overall 24 parameters and vascular segments on a 5-point ordinary scale (5 = very good, 1 = insufficient vascular visibility). Contrast bolus timing and the resulting arterio-venous overlap was also evaluated. Where available (N = 9), sparse CE-MRA was compared to intracranial Time-of-Flight MRA. The overall rating across all patients for sparse CE-MRA was 3.50 ± 1.07. Direct influence of the contrast bolus timing on the resulting image quality was observed. Overall mean vascular visibility and image quality across different features was rated good to intermediate (3.56 ± 0.95). The average performance of intracranial Time-of-Flight was rated 3.84 ± 0.87 across all patients and 3.54 ± 0.62 across all features. Sparse CE-MRA provides high-quality 3D MRA with high spatial resolution and whole-head coverage within short acquisition time. Accurate contrast bolus timing is mandatory. (orig.)
Energy Technology Data Exchange (ETDEWEB)
Gratz, Marcel; Quick, Harald H. [University of Duisburg-Essen, Erwin L. Hahn Institute for MR Imaging, Essen (Germany); University Hospital Essen, High Field and Hybrid MR Imaging, Essen (Germany); Schlamann, Marc [University Hospital Giessen and Marburg GmbH, Neuroradiology, Giessen (Germany); University Hospital Essen, Department of Diagnostic and Interventional Radiology and Neuroradiology, Essen (Germany); Goericke, Sophia [University Hospital Essen, Department of Diagnostic and Interventional Radiology and Neuroradiology, Essen (Germany); Maderwald, Stefan [University of Duisburg-Essen, Erwin L. Hahn Institute for MR Imaging, Essen (Germany)
2017-03-15
To assess the image quality of sparsely sampled contrast-enhanced MR angiography (sparse CE-MRA) providing high spatial resolution and whole-head coverage. Twenty-three patients scheduled for contrast-enhanced MR imaging of the head, (N = 19 with intracranial pathologies, N = 9 with vascular diseases), were included. Sparse CE-MRA at 3 Tesla was conducted using a single dose of contrast agent. Two neuroradiologists independently evaluated the data regarding vascular visibility and diagnostic value of overall 24 parameters and vascular segments on a 5-point ordinary scale (5 = very good, 1 = insufficient vascular visibility). Contrast bolus timing and the resulting arterio-venous overlap was also evaluated. Where available (N = 9), sparse CE-MRA was compared to intracranial Time-of-Flight MRA. The overall rating across all patients for sparse CE-MRA was 3.50 ± 1.07. Direct influence of the contrast bolus timing on the resulting image quality was observed. Overall mean vascular visibility and image quality across different features was rated good to intermediate (3.56 ± 0.95). The average performance of intracranial Time-of-Flight was rated 3.84 ± 0.87 across all patients and 3.54 ± 0.62 across all features. Sparse CE-MRA provides high-quality 3D MRA with high spatial resolution and whole-head coverage within short acquisition time. Accurate contrast bolus timing is mandatory. (orig.)
A Sparse Bayesian Learning Algorithm With Dictionary Parameter Estimation
DEFF Research Database (Denmark)
Hansen, Thomas Lundgaard; Badiu, Mihai Alin; Fleury, Bernard Henri
2014-01-01
This paper concerns sparse decomposition of a noisy signal into atoms which are specified by unknown continuous-valued parameters. An example could be estimation of the model order, frequencies and amplitudes of a superposition of complex sinusoids. The common approach is to reduce the continuous...
Fast sparse matrix-vector multiplication by partitioning and reordering
Yzelman, A.N.
2011-01-01
The thesis introduces a cache-oblivious method for the sparse matrix-vector (SpMV) multiplication, which is an important computational kernel in many applications. The method works by permuting rows and columns of the input matrix so that the resulting reordered matrix induces cache-friendly
Color normalization of histology slides using graph regularized sparse NMF
Sha, Lingdao; Schonfeld, Dan; Sethi, Amit
2017-03-01
Computer based automatic medical image processing and quantification are becoming popular in digital pathology. However, preparation of histology slides can vary widely due to differences in staining equipment, procedures and reagents, which can reduce the accuracy of algorithms that analyze their color and texture information. To re- duce the unwanted color variations, various supervised and unsupervised color normalization methods have been proposed. Compared with supervised color normalization methods, unsupervised color normalization methods have advantages of time and cost efficient and universal applicability. Most of the unsupervised color normaliza- tion methods for histology are based on stain separation. Based on the fact that stain concentration cannot be negative and different parts of the tissue absorb different stains, nonnegative matrix factorization (NMF), and particular its sparse version (SNMF), are good candidates for stain separation. However, most of the existing unsupervised color normalization method like PCA, ICA, NMF and SNMF fail to consider important information about sparse manifolds that its pixels occupy, which could potentially result in loss of texture information during color normalization. Manifold learning methods like Graph Laplacian have proven to be very effective in interpreting high-dimensional data. In this paper, we propose a novel unsupervised stain separation method called graph regularized sparse nonnegative matrix factorization (GSNMF). By considering the sparse prior of stain concentration together with manifold information from high-dimensional image data, our method shows better performance in stain color deconvolution than existing unsupervised color deconvolution methods, especially in keeping connected texture information. To utilized the texture information, we construct a nearest neighbor graph between pixels within a spatial area of an image based on their distances using heat kernal in lαβ space. The
Imbrenda, Vito; Coluzzi, Rosa; D'Emilio, Mariagrazia; Lanfredi, Maria; Simoniello, Tiziana
2013-04-01
from the NASA LP DAAC dataset. Vegetation activity trends were estimated and then normalized to the starting conditions to obtain the percentage variation (NDVI-PV) for the considered period. Information on the potential vulnerability and vegetation activity dynamics were classified into indexes and combined to obtain the final map of the actual vegetation vulnerability and to identify on-going degradation phenomena and priority sites within areas already compromised. As for the investigated area, this map shows a composite picture in which only a few values of high vulnerability are scattered along areas where medium-high vulnerability values generally prevail. Here, we singled out two kind of areas: one largely devoted to intensive agriculture, and other one mostly characterized by bare soils and sparse vegetation. On the contrary, a large part of natural and seminatural vegetation located along the Apennine chain does not show critical vulnerability values. By comparing the vegetation vulnerability map with the vulnerability map due to anthropic factors (pressure induced by agricultural and grazing activities, estimated by indicators derived from census data), we found correlation, confirming the anthropogenic cause of vulnerability and therefore the major role held by soil management in areas mainly devoted to intensive farming.
Directory of Open Access Journals (Sweden)
Anil S Thakur
2007-10-01
Full Text Available Crystallization is a major bottleneck in the process of macromolecular structure determination by X-ray crystallography. Successful crystallization requires the formation of nuclei and their subsequent growth to crystals of suitable size. Crystal growth generally occurs spontaneously in a supersaturated solution as a result of homogenous nucleation. However, in a typical sparse matrix screening experiment, precipitant and protein concentration are not sampled extensively, and supersaturation conditions suitable for nucleation are often missed.We tested the effect of nine potential heterogenous nucleating agents on crystallization of ten test proteins in a sparse matrix screen. Several nucleating agents induced crystal formation under conditions where no crystallization occurred in the absence of the nucleating agent. Four nucleating agents: dried seaweed; horse hair; cellulose and hydroxyapatite, had a considerable overall positive effect on crystallization success. This effect was further enhanced when these nucleating agents were used in combination with each other.Our results suggest that the addition of heterogeneous nucleating agents increases the chances of crystal formation when using sparse matrix screens.
A Sparse Auto Encoder Deep Process Neural Network Model and its Application
Directory of Open Access Journals (Sweden)
Xu Shaohua
2017-01-01
Full Text Available Aiming at the problem of time-varying signal pattern classification, a sparse auto-encoder deep process neural network (SAE-DPNN is proposed. The input of SAE-DPNN is time-varying process signal and the output is pattern category. It combines the time-varying signal classification method of process neural network (PNN and the data feature extraction and hierarchical sparse representation mechanism of sparse automatic encoder (SAE. Based on the feedforward PNN model, SAE-DPNN is constructed by stacking the process neurons, SAE network and softmax classifier. It can maintain the time-sequence and structure of the input signal, express and synthesize the process distribution characteristics of multidimensional time-varying signals and their combinations. SAE-DPNN improves the identification of complex features and distinguishes between different types of signals, realizes the direct classification of time-varying signals. In this paper, the feature extraction and representation mechanism of time-varying signal in SAE-DPNN are analyzed, and a specific learning algorithm is given. The experimental results verify the effectiveness of the model and algorithm.
Directory of Open Access Journals (Sweden)
Javier Marcello
2016-09-01
Full Text Available The precise mapping of vegetation covers in semi-arid areas is a complex task as this type of environment consists of sparse vegetation mainly composed of small shrubs. The launch of high resolution satellites, with additional spectral bands and the ability to alter the viewing angle, offers a useful technology to focus on this objective. In this context, atmospheric correction is a fundamental step in the pre-processing of such remote sensing imagery and, consequently, different algorithms have been developed for this purpose over the years. They are commonly categorized as imaged-based methods as well as in more advanced physical models based on the radiative transfer theory. Despite the relevance of this topic, a few comparative studies covering several methods have been carried out using high resolution data or which are specifically applied to vegetation covers. In this work, the performance of five representative atmospheric correction algorithms (DOS, QUAC, FLAASH, ATCOR and 6S has been assessed, using high resolution Worldview-2 imagery and field spectroradiometer data collected simultaneously, with the goal of identifying the most appropriate techniques. The study also included a detailed analysis of the parameterization influence on the final results of the correction, the aerosol model and its optical thickness being important parameters to be properly adjusted. The effects of corrections were studied in vegetation and soil sites belonging to different protected semi-arid ecosystems (high mountain and coastal areas. In summary, the superior performance of model-based algorithms, 6S in particular, has been demonstrated, achieving reflectance estimations very close to the in-situ measurements (RMSE of between 2% and 3%. Finally, an example of the importance of the atmospheric correction in the vegetation estimation in these natural areas is presented, allowing the robust mapping of species and the analysis of multitemporal variations
Occlusion detection via structured sparse learning for robust object tracking
Zhang, Tianzhu; Ghanem, Bernard; Xu, Changsheng; Ahuja, Narendra
2014-01-01
occlusion through structured sparse learning. We test our tracker on challenging benchmark sequences, such as sports videos, which involve heavy occlusion, drastic illumination changes, and large pose variations. Extensive experimental results show that our
Directory of Open Access Journals (Sweden)
Xiaodong Zhang
2016-01-01
Full Text Available Segmentation of infarcts at hyperacute stage is challenging as they exhibit substantial variability which may even be hard for experts to delineate manually. In this paper, a sparse representation based classification method is explored. For each patient, four volumetric data items including three volumes of diffusion weighted imaging and a computed asymmetry map are employed to extract patch features which are then fed to dictionary learning and classification based on sparse representation. Elastic net is adopted to replace the traditional L0-norm/L1-norm constraints on sparse representation to stabilize sparse code. To decrease computation cost and to reduce false positives, regions-of-interest are determined to confine candidate infarct voxels. The proposed method has been validated on 98 consecutive patients recruited within 6 hours from onset. It is shown that the proposed method could handle well infarcts with intensity variability and ill-defined edges to yield significantly higher Dice coefficient (0.755 ± 0.118 than the other two methods and their enhanced versions by confining their segmentations within the regions-of-interest (average Dice coefficient less than 0.610. The proposed method could provide a potential tool to quantify infarcts from diffusion weighted imaging at hyperacute stage with accuracy and speed to assist the decision making especially for thrombolytic therapy.
DEFF Research Database (Denmark)
Shutin, Dmitriy; Fleury, Bernard Henri
2011-01-01
In this paper, we develop a sparse variational Bayesian (VB) extension of the space-alternating generalized expectation-maximization (SAGE) algorithm for the high resolution estimation of the parameters of relevant multipath components in the response of frequency and spatially selective wireless...... channels. The application context of the algorithm considered in this contribution is parameter estimation from channel sounding measurements for radio channel modeling purpose. The new sparse VB-SAGE algorithm extends the classical SAGE algorithm in two respects: i) by monotonically minimizing...... parametric sparsity priors for the weights of the multipath components. We revisit the Gaussian sparsity priors within the sparse VB-SAGE framework and extend the results by considering Laplace priors. The structure of the VB-SAGE algorithm allows for an analytical stability analysis of the update expression...
Sparse PDF maps for non-linear multi-resolution image operations
Hadwiger, Markus
2012-11-01
We introduce a new type of multi-resolution image pyramid for high-resolution images called sparse pdf maps (sPDF-maps). Each pyramid level consists of a sparse encoding of continuous probability density functions (pdfs) of pixel neighborhoods in the original image. The encoded pdfs enable the accurate computation of non-linear image operations directly in any pyramid level with proper pre-filtering for anti-aliasing, without accessing higher or lower resolutions. The sparsity of sPDF-maps makes them feasible for gigapixel images, while enabling direct evaluation of a variety of non-linear operators from the same representation. We illustrate this versatility for antialiased color mapping, O(n) local Laplacian filters, smoothed local histogram filters (e.g., median or mode filters), and bilateral filters. © 2012 ACM.
Sparse Nonlinear Electromagnetic Imaging Accelerated With Projected Steepest Descent Algorithm
Desmal, Abdulla
2017-04-03
An efficient electromagnetic inversion scheme for imaging sparse 3-D domains is proposed. The scheme achieves its efficiency and accuracy by integrating two concepts. First, the nonlinear optimization problem is constrained using L₀ or L₁-norm of the solution as the penalty term to alleviate the ill-posedness of the inverse problem. The resulting Tikhonov minimization problem is solved using nonlinear Landweber iterations (NLW). Second, the efficiency of the NLW is significantly increased using a steepest descent algorithm. The algorithm uses a projection operator to enforce the sparsity constraint by thresholding the solution at every iteration. Thresholding level and iteration step are selected carefully to increase the efficiency without sacrificing the convergence of the algorithm. Numerical results demonstrate the efficiency and accuracy of the proposed imaging scheme in reconstructing sparse 3-D dielectric profiles.
A distributed-memory hierarchical solver for general sparse linear systems
Energy Technology Data Exchange (ETDEWEB)
Chen, Chao [Stanford Univ., CA (United States). Inst. for Computational and Mathematical Engineering; Pouransari, Hadi [Stanford Univ., CA (United States). Dept. of Mechanical Engineering; Rajamanickam, Sivasankaran [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Center for Computing Research; Boman, Erik G. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States). Center for Computing Research; Darve, Eric [Stanford Univ., CA (United States). Inst. for Computational and Mathematical Engineering and Dept. of Mechanical Engineering
2017-12-20
We present a parallel hierarchical solver for general sparse linear systems on distributed-memory machines. For large-scale problems, this fully algebraic algorithm is faster and more memory-efficient than sparse direct solvers because it exploits the low-rank structure of fill-in blocks. Depending on the accuracy of low-rank approximations, the hierarchical solver can be used either as a direct solver or as a preconditioner. The parallel algorithm is based on data decomposition and requires only local communication for updating boundary data on every processor. Moreover, the computation-to-communication ratio of the parallel algorithm is approximately the volume-to-surface-area ratio of the subdomain owned by every processor. We also provide various numerical results to demonstrate the versatility and scalability of the parallel algorithm.
VEGETATION MAPPING IN WETLANDS
Directory of Open Access Journals (Sweden)
F. PEDROTTI
2004-01-01
Full Text Available The current work examines the main aspects of wetland vegetation mapping, which can be summarized as analysis of the ecological-vegetational (ecotone gradients; vegetation complexes; relationships between vegetation distribution and geomorphology; vegetation of the hydrographic basin lo which the wetland in question belongs; vegetation monitoring with help of four vegetation maps: phytosociological map of the real and potential vegetation, map of vegetation dynamical tendencies, map of vegetation series.
The Irrigation Effect: How River Regulation Can Promote Some Riparian Vegetation
Gill, Karen M.; Goater, Lori A.; Braatne, Jeffrey H.; Rood, Stewart B.
2018-04-01
River regulation impacts riparian ecosystems by altering the hydrogeomorphic conditions that support streamside vegetation. Obligate riparian plants are often negatively impacted since they are ecological specialists with particular instream flow requirements. Conversely, facultative riparian plants are generalists and may be less vulnerable to river regulation, and could benefit from augmented flows that reduce drought stress during hot and dry periods. To consider this `irrigation effect' we studied the facultative shrub, netleaf hackberry ( Celtis reticulata), the predominant riparian plant along the Hells Canyon corridor of the Snake River, Idaho, USA, where dams produce hydropeaking, diurnal flow variation. Inventories of 235 cross-sectional transects revealed that hackberry was uncommon upstream from the reservoirs, sparse along the reservoir with seasonal draw-down and common along two reservoirs with stabilized water levels. Along the Snake River downstream, hackberry occurred in fairly continuous, dense bands along the high water line. In contrast, hackberry was sparsely scattered along the free-flowing Salmon River, where sandbar willow ( Salix exigua), an obligate riparian shrub, was abundant. Below the confluence of the Snake and Salmon rivers, the abundance and distribution of hackberry were intermediate between the two upstream reaches. Thus, river regulation apparently benefited hackberry along the Snake River through Hells Canyon, probably due to diurnal pulsing that wets the riparian margin. We predict similar benefits for some other facultative riparian plants along other regulated rivers with hydropeaking during warm and dry intervals. To analyze the ecological impacts of hydropeaking we recommend assessing daily maxima, as well as daily mean river flows.
SparseLeap: Efficient Empty Space Skipping for Large-Scale Volume Rendering
Hadwiger, Markus; Al-Awami, Ali K.; Beyer, Johanna; Agus, Marco; Pfister, Hanspeter
2017-01-01
Recent advances in data acquisition produce volume data of very high resolution and large size, such as terabyte-sized microscopy volumes. These data often contain many fine and intricate structures, which pose huge challenges for volume rendering, and make it particularly important to efficiently skip empty space. This paper addresses two major challenges: (1) The complexity of large volumes containing fine structures often leads to highly fragmented space subdivisions that make empty regions hard to skip efficiently. (2) The classification of space into empty and non-empty regions changes frequently, because the user or the evaluation of an interactive query activate a different set of objects, which makes it unfeasible to pre-compute a well-adapted space subdivision. We describe the novel SparseLeap method for efficient empty space skipping in very large volumes, even around fine structures. The main performance characteristic of SparseLeap is that it moves the major cost of empty space skipping out of the ray-casting stage. We achieve this via a hybrid strategy that balances the computational load between determining empty ray segments in a rasterization (object-order) stage, and sampling non-empty volume data in the ray-casting (image-order) stage. Before ray-casting, we exploit the fast hardware rasterization of GPUs to create a ray segment list for each pixel, which identifies non-empty regions along the ray. The ray-casting stage then leaps over empty space without hierarchy traversal. Ray segment lists are created by rasterizing a set of fine-grained, view-independent bounding boxes. Frame coherence is exploited by re-using the same bounding boxes unless the set of active objects changes. We show that SparseLeap scales better to large, sparse data than standard octree empty space skipping.
SparseLeap: Efficient Empty Space Skipping for Large-Scale Volume Rendering
Hadwiger, Markus
2017-08-28
Recent advances in data acquisition produce volume data of very high resolution and large size, such as terabyte-sized microscopy volumes. These data often contain many fine and intricate structures, which pose huge challenges for volume rendering, and make it particularly important to efficiently skip empty space. This paper addresses two major challenges: (1) The complexity of large volumes containing fine structures often leads to highly fragmented space subdivisions that make empty regions hard to skip efficiently. (2) The classification of space into empty and non-empty regions changes frequently, because the user or the evaluation of an interactive query activate a different set of objects, which makes it unfeasible to pre-compute a well-adapted space subdivision. We describe the novel SparseLeap method for efficient empty space skipping in very large volumes, even around fine structures. The main performance characteristic of SparseLeap is that it moves the major cost of empty space skipping out of the ray-casting stage. We achieve this via a hybrid strategy that balances the computational load between determining empty ray segments in a rasterization (object-order) stage, and sampling non-empty volume data in the ray-casting (image-order) stage. Before ray-casting, we exploit the fast hardware rasterization of GPUs to create a ray segment list for each pixel, which identifies non-empty regions along the ray. The ray-casting stage then leaps over empty space without hierarchy traversal. Ray segment lists are created by rasterizing a set of fine-grained, view-independent bounding boxes. Frame coherence is exploited by re-using the same bounding boxes unless the set of active objects changes. We show that SparseLeap scales better to large, sparse data than standard octree empty space skipping.
Canopy Modeling of Aquatic Vegetation: Construction of Submerged Vegetation Index
Ma, Z.; Zhou, G.
2018-04-01
The unique spectral characteristics of submerged vegetation in wetlands determine that the conventional terrestrial vegetation index cannot be directly employed to species identification and parameter inversion of submerged vegetation. Based on the Aquatic Vegetation Radiative Transfer model (AVRT), this paper attempts to construct an index suitable for submerged vegetation, the model simulated data and a scene of Sentinel-2A image in Taihu Lake, China are utilized for assessing the performance of the newly constructed indices and the existent vegetation indices. The results show that the angle index composed by 525 nm, 555 nm and 670 nm can resist the effects of water columns and is more sensitive to vegetation parameters such as LAI. Furthermore, it makes a well discrimination between submerged vegetation and water bodies in the satellite data. We hope that the new index will provide a theoretical basis for future research.
Xuan, Junyu; Lu, Jie; Zhang, Guangquan; Xu, Richard Yi Da; Luo, Xiangfeng
2018-05-01
Sparse nonnegative matrix factorization (SNMF) aims to factorize a data matrix into two optimized nonnegative sparse factor matrices, which could benefit many tasks, such as document-word co-clustering. However, the traditional SNMF typically assumes the number of latent factors (i.e., dimensionality of the factor matrices) to be fixed. This assumption makes it inflexible in practice. In this paper, we propose a doubly sparse nonparametric NMF framework to mitigate this issue by using dependent Indian buffet processes (dIBP). We apply a correlation function for the generation of two stick weights associated with each column pair of factor matrices while still maintaining their respective marginal distribution specified by IBP. As a consequence, the generation of two factor matrices will be columnwise correlated. Under this framework, two classes of correlation function are proposed: 1) using bivariate Beta distribution and 2) using Copula function. Compared with the single IBP-based NMF, this paper jointly makes two factor matrices nonparametric and sparse, which could be applied to broader scenarios, such as co-clustering. This paper is seen to be much more flexible than Gaussian process-based and hierarchial Beta process-based dIBPs in terms of allowing the two corresponding binary matrix columns to have greater variations in their nonzero entries. Our experiments on synthetic data show the merits of this paper compared with the state-of-the-art models in respect of factorization efficiency, sparsity, and flexibility. Experiments on real-world data sets demonstrate the efficiency of this paper in document-word co-clustering tasks.
Deformable MR Prostate Segmentation via Deep Feature Learning and Sparse Patch Matching.
Guo, Yanrong; Gao, Yaozong; Shen, Dinggang
2016-04-01
Automatic and reliable segmentation of the prostate is an important but difficult task for various clinical applications such as prostate cancer radiotherapy. The main challenges for accurate MR prostate localization lie in two aspects: (1) inhomogeneous and inconsistent appearance around prostate boundary, and (2) the large shape variation across different patients. To tackle these two problems, we propose a new deformable MR prostate segmentation method by unifying deep feature learning with the sparse patch matching. First, instead of directly using handcrafted features, we propose to learn the latent feature representation from prostate MR images by the stacked sparse auto-encoder (SSAE). Since the deep learning algorithm learns the feature hierarchy from the data, the learned features are often more concise and effective than the handcrafted features in describing the underlying data. To improve the discriminability of learned features, we further refine the feature representation in a supervised fashion. Second, based on the learned features, a sparse patch matching method is proposed to infer a prostate likelihood map by transferring the prostate labels from multiple atlases to the new prostate MR image. Finally, a deformable segmentation is used to integrate a sparse shape model with the prostate likelihood map for achieving the final segmentation. The proposed method has been extensively evaluated on the dataset that contains 66 T2-wighted prostate MR images. Experimental results show that the deep-learned features are more effective than the handcrafted features in guiding MR prostate segmentation. Moreover, our method shows superior performance than other state-of-the-art segmentation methods.
Three-dimensional sparse electromagnetic imaging accelerated by projected steepest descent
Desmal, Abdulla; Bagci, Hakan
2016-01-01
An efficient and accurate scheme for solving the nonlinear electromagnetic inverse scattering problem on three-dimensional sparse investigation domains is proposed. The minimization problem is constructed in such a way that the data misfit between
Sparse direct solver for large finite element problems based on the minimum degree algorithm
Czech Academy of Sciences Publication Activity Database
Pařík, Petr; Plešek, Jiří
2017-01-01
Roč. 113, November (2017), s. 2-6 ISSN 0965-9978 R&D Projects: GA ČR(CZ) GA15-20666S; GA MŠk(CZ) EF15_003/0000493 Institutional support: RVO:61388998 Keywords : sparse direct solution * finite element method * large sparse Linear systems Subject RIV: JR - Other Machinery OBOR OECD: Mechanical engineering Impact factor: 3.000, year: 2016 https://www.sciencedirect.com/science/article/pii/S0965997817302582
Statistical mechanics of semi-supervised clustering in sparse graphs
International Nuclear Information System (INIS)
Ver Steeg, Greg; Galstyan, Aram; Allahverdyan, Armen E
2011-01-01
We theoretically study semi-supervised clustering in sparse graphs in the presence of pair-wise constraints on the cluster assignments of nodes. We focus on bi-cluster graphs and study the impact of semi-supervision for varying constraint density and overlap between the clusters. Recent results for unsupervised clustering in sparse graphs indicate that there is a critical ratio of within-cluster and between-cluster connectivities below which clusters cannot be recovered with better than random accuracy. The goal of this paper is to examine the impact of pair-wise constraints on the clustering accuracy. Our results suggest that the addition of constraints does not provide automatic improvement over the unsupervised case. When the density of the constraints is sufficiently small, their only impact is to shift the detection threshold while preserving the criticality. Conversely, if the density of (hard) constraints is above the percolation threshold, the criticality is suppressed and the detection threshold disappears
A sparse electromagnetic imaging scheme using nonlinear landweber iterations
Desmal, Abdulla
2015-10-26
Development and use of electromagnetic inverse scattering techniques for imagining sparse domains have been on the rise following the recent advancements in solving sparse optimization problems. Existing techniques rely on iteratively converting the nonlinear forward scattering operator into a sequence of linear ill-posed operations (for example using the Born iterative method) and applying sparsity constraints to the linear minimization problem of each iteration through the use of L0/L1-norm penalty term (A. Desmal and H. Bagci, IEEE Trans. Antennas Propag, 7, 3878–3884, 2014, and IEEE Trans. Geosci. Remote Sens., 3, 532–536, 2015). It has been shown that these techniques produce more accurate and sharper images than their counterparts which solve a minimization problem constrained with smoothness promoting L2-norm penalty term. But these existing techniques are only applicable to investigation domains involving weak scatterers because the linearization process breaks down for high values of dielectric permittivity.
Sparse image representation for jet neutron and gamma tomography
Energy Technology Data Exchange (ETDEWEB)
Craciunescu, T. [EURATOM-MEdC Association, Institute for Laser, Plasma and Radiation Physics, Bucharest (Romania); Kiptily, V. [EURATOM/CCFE Association, Culham Science Centre, Abingdon (United Kingdom); Murari, A. [Consorzio RFX, Associazione EURATOM-ENEA per la Fusione, Padova (Italy); Tiseanu, I.; Zoita, V. [EURATOM-MEdC Association, Institute for Laser, Plasma and Radiation Physics, Bucharest (Romania)
2013-10-15
Highlights: •A new tomographic method for the reconstruction of the 2-D neutron and gamma emissivity on JET. •The method is based on the sparse representation of the reconstructed image in an over-complete dictionary. •Several techniques, based on a priori information are used to regularize this highly limited data set tomographic problem. •The proposed method provides good reconstructions in terms of shapes and resolution. -- Abstract: The JET gamma/neutron profile monitor plasma coverage of the emissive region enables tomographic reconstruction. However, due to the availability of only two projection angles and to the coarse sampling, tomography is a highly limited data set problem. A new reconstruction method, based on the sparse representation of the reconstructed image in an over-complete dictionary, has been developed and applied to JET neutron/gamma tomography. The method has been tested on JET experimental data and significant results are presented. The proposed method provides good reconstructions in terms of shapes and resolution.
Yan, Dan; Bai, Lianfa; Zhang, Yi; Han, Jing
2018-02-01
For the problems of missing details and performance of the colorization based on sparse representation, we propose a conceptual model framework for colorizing gray-scale images, and then a multi-sparse dictionary colorization algorithm based on the feature classification and detail enhancement (CEMDC) is proposed based on this framework. The algorithm can achieve a natural colorized effect for a gray-scale image, and it is consistent with the human vision. First, the algorithm establishes a multi-sparse dictionary classification colorization model. Then, to improve the accuracy rate of the classification, the corresponding local constraint algorithm is proposed. Finally, we propose a detail enhancement based on Laplacian Pyramid, which is effective in solving the problem of missing details and improving the speed of image colorization. In addition, the algorithm not only realizes the colorization of the visual gray-scale image, but also can be applied to the other areas, such as color transfer between color images, colorizing gray fusion images, and infrared images.
Thin-film sparse boundary array design for passive acoustic mapping during ultrasound therapy.
Coviello, Christian M; Kozick, Richard J; Hurrell, Andrew; Smith, Penny Probert; Coussios, Constantin-C
2012-10-01
A new 2-D hydrophone array for ultrasound therapy monitoring is presented, along with a novel algorithm for passive acoustic mapping using a sparse weighted aperture. The array is constructed using existing polyvinylidene fluoride (PVDF) ultrasound sensor technology, and is utilized for its broadband characteristics and its high receive sensitivity. For most 2-D arrays, high-resolution imagery is desired, which requires a large aperture at the cost of a large number of elements. The proposed array's geometry is sparse, with elements only on the boundary of the rectangular aperture. The missing information from the interior is filled in using linear imaging techniques. After receiving acoustic emissions during ultrasound therapy, this algorithm applies an apodization to the sparse aperture to limit side lobes and then reconstructs acoustic activity with high spatiotemporal resolution. Experiments show verification of the theoretical point spread function, and cavitation maps in agar phantoms correspond closely to predicted areas, showing the validity of the array and methodology.
Robust and Secure Watermarking Using Sparse Information of Watermark for Biometric Data Protection
Directory of Open Access Journals (Sweden)
Rohit M Thanki
2016-08-01
Full Text Available Biometric based human authentication system is used for security purpose in many organizations in the present world. This biometric authentication system has several vulnerable points. Two of vulnerable points are protection of biometric templates at system database and protection of biometric templates at communication channel between two modules of biometric authentication systems. In this paper proposed a robust watermarking scheme using the sparse information of watermark biometric to secure vulnerable point like protection of biometric templates at the communication channel of biometric authentication systems. A compressive sensing theory procedure is used for generation of sparse information on watermark biometric data using detail wavelet coefficients. Then sparse information of watermark biometric data is embedded into DCT coefficients of host biometric data. This proposed scheme is robust to common signal processing and geometric attacks like JPEG compression, adding noise, filtering, and cropping, histogram equalization. This proposed scheme has more advantages and high quality measures compared to existing schemes in the literature.
Sparse Channel Estimation for MIMO-OFDM Two-Way Relay Network with Compressed Sensing
Directory of Open Access Journals (Sweden)
Aihua Zhang
2013-01-01
Full Text Available Accurate channel impulse response (CIR is required for equalization and can help improve communication service quality in next-generation wireless communication systems. An example of an advanced system is amplify-and-forward multiple-input multiple-output two-way relay network, which is modulated by orthogonal frequency-division multiplexing. Linear channel estimation methods, for example, least squares and expectation conditional maximization, have been proposed previously for the system. However, these methods do not take advantage of channel sparsity, and they decrease estimation performance. We propose a sparse channel estimation scheme, which is different from linear methods, at end users under the relay channel to enable us to exploit sparsity. First, we formulate the sparse channel estimation problem as a compressed sensing problem by using sparse decomposition theory. Second, the CIR is reconstructed by CoSaMP and OMP algorithms. Finally, computer simulations are conducted to confirm the superiority of the proposed methods over traditional linear channel estimation methods.
Classification of Clouds in Satellite Imagery Using Adaptive Fuzzy Sparse Representation
Directory of Open Access Journals (Sweden)
Wei Jin
2016-12-01
Full Text Available Automatic cloud detection and classification using satellite cloud imagery have various meteorological applications such as weather forecasting and climate monitoring. Cloud pattern analysis is one of the research hotspots recently. Since satellites sense the clouds remotely from space, and different cloud types often overlap and convert into each other, there must be some fuzziness and uncertainty in satellite cloud imagery. Satellite observation is susceptible to noises, while traditional cloud classification methods are sensitive to noises and outliers; it is hard for traditional cloud classification methods to achieve reliable results. To deal with these problems, a satellite cloud classification method using adaptive fuzzy sparse representation-based classification (AFSRC is proposed. Firstly, by defining adaptive parameters related to attenuation rate and critical membership, an improved fuzzy membership is introduced to accommodate the fuzziness and uncertainty of satellite cloud imagery; secondly, by effective combination of the improved fuzzy membership function and sparse representation-based classification (SRC, atoms in training dictionary are optimized; finally, an adaptive fuzzy sparse representation classifier for cloud classification is proposed. Experiment results on FY-2G satellite cloud image show that, the proposed method not only improves the accuracy of cloud classification, but also has strong stability and adaptability with high computational efficiency.
Classification of Clouds in Satellite Imagery Using Adaptive Fuzzy Sparse Representation
Jin, Wei; Gong, Fei; Zeng, Xingbin; Fu, Randi
2016-01-01
Automatic cloud detection and classification using satellite cloud imagery have various meteorological applications such as weather forecasting and climate monitoring. Cloud pattern analysis is one of the research hotspots recently. Since satellites sense the clouds remotely from space, and different cloud types often overlap and convert into each other, there must be some fuzziness and uncertainty in satellite cloud imagery. Satellite observation is susceptible to noises, while traditional cloud classification methods are sensitive to noises and outliers; it is hard for traditional cloud classification methods to achieve reliable results. To deal with these problems, a satellite cloud classification method using adaptive fuzzy sparse representation-based classification (AFSRC) is proposed. Firstly, by defining adaptive parameters related to attenuation rate and critical membership, an improved fuzzy membership is introduced to accommodate the fuzziness and uncertainty of satellite cloud imagery; secondly, by effective combination of the improved fuzzy membership function and sparse representation-based classification (SRC), atoms in training dictionary are optimized; finally, an adaptive fuzzy sparse representation classifier for cloud classification is proposed. Experiment results on FY-2G satellite cloud image show that, the proposed method not only improves the accuracy of cloud classification, but also has strong stability and adaptability with high computational efficiency. PMID:27999261
Robust Single Image Super-Resolution via Deep Networks With Sparse Prior.
Liu, Ding; Wang, Zhaowen; Wen, Bihan; Yang, Jianchao; Han, Wei; Huang, Thomas S
2016-07-01
Single image super-resolution (SR) is an ill-posed problem, which tries to recover a high-resolution image from its low-resolution observation. To regularize the solution of the problem, previous methods have focused on designing good priors for natural images, such as sparse representation, or directly learning the priors from a large data set with models, such as deep neural networks. In this paper, we argue that domain expertise from the conventional sparse coding model can be combined with the key ingredients of deep learning to achieve further improved results. We demonstrate that a sparse coding model particularly designed for SR can be incarnated as a neural network with the merit of end-to-end optimization over training data. The network has a cascaded structure, which boosts the SR performance for both fixed and incremental scaling factors. The proposed training and testing schemes can be extended for robust handling of images with additional degradation, such as noise and blurring. A subjective assessment is conducted and analyzed in order to thoroughly evaluate various SR techniques. Our proposed model is tested on a wide range of images, and it significantly outperforms the existing state-of-the-art methods for various scaling factors both quantitatively and perceptually.
Sparse orthogonal population representation of spatial context in the retrosplenial cortex.
Mao, Dun; Kandler, Steffen; McNaughton, Bruce L; Bonin, Vincent
2017-08-15
Sparse orthogonal coding is a key feature of hippocampal neural activity, which is believed to increase episodic memory capacity and to assist in navigation. Some retrosplenial cortex (RSC) neurons convey distributed spatial and navigational signals, but place-field representations such as observed in the hippocampus have not been reported. Combining cellular Ca 2+ imaging in RSC of mice with a head-fixed locomotion assay, we identified a population of RSC neurons, located predominantly in superficial layers, whose ensemble activity closely resembles that of hippocampal CA1 place cells during the same task. Like CA1 place cells, these RSC neurons fire in sequences during movement, and show narrowly tuned firing fields that form a sparse, orthogonal code correlated with location. RSC 'place' cell activity is robust to environmental manipulations, showing partial remapping similar to that observed in CA1. This population code for spatial context may assist the RSC in its role in memory and/or navigation.Neurons in the retrosplenial cortex (RSC) encode spatial and navigational signals. Here the authors use calcium imaging to show that, similar to the hippocampus, RSC neurons also encode place cell-like activity in a sparse orthogonal representation, partially anchored to the allocentric cues on the linear track.
Online learning control using adaptive critic designs with sparse kernel machines.
Xu, Xin; Hou, Zhongsheng; Lian, Chuanqiang; He, Haibo
2013-05-01
In the past decade, adaptive critic designs (ACDs), including heuristic dynamic programming (HDP), dual heuristic programming (DHP), and their action-dependent ones, have been widely studied to realize online learning control of dynamical systems. However, because neural networks with manually designed features are commonly used to deal with continuous state and action spaces, the generalization capability and learning efficiency of previous ACDs still need to be improved. In this paper, a novel framework of ACDs with sparse kernel machines is presented by integrating kernel methods into the critic of ACDs. To improve the generalization capability as well as the computational efficiency of kernel machines, a sparsification method based on the approximately linear dependence analysis is used. Using the sparse kernel machines, two kernel-based ACD algorithms, that is, kernel HDP (KHDP) and kernel DHP (KDHP), are proposed and their performance is analyzed both theoretically and empirically. Because of the representation learning and generalization capability of sparse kernel machines, KHDP and KDHP can obtain much better performance than previous HDP and DHP with manually designed neural networks. Simulation and experimental results of two nonlinear control problems, that is, a continuous-action inverted pendulum problem and a ball and plate control problem, demonstrate the effectiveness of the proposed kernel ACD methods.
Diffusion Indexes With Sparse Loadings
DEFF Research Database (Denmark)
Kristensen, Johannes Tang
2017-01-01
The use of large-dimensional factor models in forecasting has received much attention in the literature with the consensus being that improvements on forecasts can be achieved when comparing with standard models. However, recent contributions in the literature have demonstrated that care needs...... to the problem by using the least absolute shrinkage and selection operator (LASSO) as a variable selection method to choose between the possible variables and thus obtain sparse loadings from which factors or diffusion indexes can be formed. This allows us to build a more parsimonious factor model...... in forecasting accuracy and thus find it to be an important alternative to PC. Supplementary materials for this article are available online....
Neural Network for Sparse Reconstruction
Directory of Open Access Journals (Sweden)
Qingfa Li
2014-01-01
Full Text Available We construct a neural network based on smoothing approximation techniques and projected gradient method to solve a kind of sparse reconstruction problems. Neural network can be implemented by circuits and can be seen as an important method for solving optimization problems, especially large scale problems. Smoothing approximation is an efficient technique for solving nonsmooth optimization problems. We combine these two techniques to overcome the difficulties of the choices of the step size in discrete algorithms and the item in the set-valued map of differential inclusion. In theory, the proposed network can converge to the optimal solution set of the given problem. Furthermore, some numerical experiments show the effectiveness of the proposed network in this paper.
The application of low-rank and sparse decomposition method in the field of climatology
Gupta, Nitika; Bhaskaran, Prasad K.
2018-04-01
The present study reports a low-rank and sparse decomposition method that separates the mean and the variability of a climate data field. Until now, the application of this technique was limited only in areas such as image processing, web data ranking, and bioinformatics data analysis. In climate science, this method exactly separates the original data into a set of low-rank and sparse components, wherein the low-rank components depict the linearly correlated dataset (expected or mean behavior), and the sparse component represents the variation or perturbation in the dataset from its mean behavior. The study attempts to verify the efficacy of this proposed technique in the field of climatology with two examples of real world. The first example attempts this technique on the maximum wind-speed (MWS) data for the Indian Ocean (IO) region. The study brings to light a decadal reversal pattern in the MWS for the North Indian Ocean (NIO) during the months of June, July, and August (JJA). The second example deals with the sea surface temperature (SST) data for the Bay of Bengal region that exhibits a distinct pattern in the sparse component. The study highlights the importance of the proposed technique used for interpretation and visualization of climate data.
An investigation of 'sparse channel networks'. Characteristic behaviours and their causes
International Nuclear Information System (INIS)
Black, J.H.; Barker, J.A.; Woodman, N.D.
2007-09-01
This report represents a third study in a series concerned with groundwater flow in poorly permeable fractured crystalline rocks. The study has brought together three linked, but distinct, elements; a mathematical analysis of the intersection of ellipses, a review of field measurements associated with nuclear waste repository investigations and probabilistic simulations using a lattice network numerical model. We conclude that the model of channels that traverse fracture intersections without necessarily branching is a very likely representation of reality. More generally, assembling all the lines of evidence, it is suggested that groundwater flow systems in fractured crystalline rocks in the environs of underground laboratories have the following characteristics: Groundwater flows within a sparse network of channels just above the percolation limit. The frequency of intersections is low in that individual channels extend considerable distances between significant junctions. Individual channels often extend over many fracture surfaces and the resulting flow system is only weakly related to the density or size of mappable fractures. The sparseness of systems compared to the size of drifts and tunnels means that only a very few flow channels are intersected by drifts and tunnels. Highly convergent flow is required to connect to the rest of the network and this is misinterpreted as a skin of low hydraulic conductivity. Systems are so sparse that they are controlled by a few 'chokes' that give rise to compartments of head, and probably, of groundwater chemistry. Channels occur on all fracture planes, including those within fracture zones, and although the characteristics of the fracture zone channel networks may differ from those in surrounding rocks, they are nonetheless still channel networks. The actively flowing sparse channel network, occurring within any particular rock, is a naturally selected, small sub-set of the available channels. Hence, there are many
Non-Cartesian MRI scan time reduction through sparse sampling
Wajer, F.T.A.W.
2001-01-01
Non-Cartesian MRI Scan-Time Reduction through Sparse Sampling Magnetic resonance imaging (MRI) signals are measured in the Fourier domain, also called k-space. Samples of the MRI signal can not be taken at will, but lie along k-space trajectories determined by the magnetic field gradients. MRI
Point-source reconstruction with a sparse light-sensor array for optical TPC readout
International Nuclear Information System (INIS)
Rutter, G; Richards, M; Bennieston, A J; Ramachers, Y A
2011-01-01
A reconstruction technique for sparse array optical signal readout is introduced and applied to the generic challenge of large-area readout of a large number of point light sources. This challenge finds a prominent example in future, large volume neutrino detector studies based on liquid argon. It is concluded that the sparse array option may be ruled out for reasons of required number of channels when compared to a benchmark derived from charge readout on wire-planes. Smaller-scale detectors, however, could benefit from this technology.
SuperLU{_}DIST: A scalable distributed-memory sparse direct solver for unsymmetric linear systems
Energy Technology Data Exchange (ETDEWEB)
Li, Xiaoye S.; Demmel, James W.
2002-03-27
In this paper, we present the main algorithmic features in the software package SuperLU{_}DIST, a distributed-memory sparse direct solver for large sets of linear equations. We give in detail our parallelization strategies, with focus on scalability issues, and demonstrate the parallel performance and scalability on current machines. The solver is based on sparse Gaussian elimination, with an innovative static pivoting strategy proposed earlier by the authors. The main advantage of static pivoting over classical partial pivoting is that it permits a priori determination of data structures and communication pattern for sparse Gaussian elimination, which makes it more scalable on distributed memory machines. Based on this a priori knowledge, we designed highly parallel and scalable algorithms for both LU decomposition and triangular solve and we show that they are suitable for large-scale distributed memory machines.
Vegetation dynamics and dynamic vegetation science
Van der Maarel, E
1996-01-01
his contribution presents a review of the development of the study of vegetation dynamics since 1979, in the framework of a jubilee meeting on progress in the study of vegetation. However, an exhaustive review is both impossible and unnecessary. It is impossible within the few pages available
Vegetation survey: a new focus for Applied Vegetation Science
Chytry, M.; Schaminee, J.H.J.; Schwabe, A.
2011-01-01
Vegetation survey is an important research agenda in vegetation science. It defines vegetation types and helps understand differences among them, which is essential for both basic ecological research and applications in biodiversity conservation and environmental monitoring. In this editorial, we
Nonredundant sparse feature extraction using autoencoders with receptive fields clustering.
Ayinde, Babajide O; Zurada, Jacek M
2017-09-01
This paper proposes new techniques for data representation in the context of deep learning using agglomerative clustering. Existing autoencoder-based data representation techniques tend to produce a number of encoding and decoding receptive fields of layered autoencoders that are duplicative, thereby leading to extraction of similar features, thus resulting in filtering redundancy. We propose a way to address this problem and show that such redundancy can be eliminated. This yields smaller networks and produces unique receptive fields that extract distinct features. It is also shown that autoencoders with nonnegativity constraints on weights are capable of extracting fewer redundant features than conventional sparse autoencoders. The concept is illustrated using conventional sparse autoencoder and nonnegativity-constrained autoencoders with MNIST digits recognition, NORB normalized-uniform object data and Yale face dataset. Copyright © 2017 Elsevier Ltd. All rights reserved.
A fast sparse reconstruction algorithm for electrical tomography
International Nuclear Information System (INIS)
Zhao, Jia; Xu, Yanbin; Tan, Chao; Dong, Feng
2014-01-01
Electrical tomography (ET) has been widely investigated due to its advantages of being non-radiative, low-cost and high-speed. However, the image reconstruction of ET is a nonlinear and ill-posed inverse problem and the imaging results are easily affected by measurement noise. A sparse reconstruction algorithm based on L 1 regularization is robust to noise and consequently provides a high quality of reconstructed images. In this paper, a sparse reconstruction by separable approximation algorithm (SpaRSA) is extended to solve the ET inverse problem. The algorithm is competitive with the fastest state-of-the-art algorithms in solving the standard L 2 −L 1 problem. However, it is computationally expensive when the dimension of the matrix is large. To further improve the calculation speed of solving inverse problems, a projection method based on the Krylov subspace is employed and combined with the SpaRSA algorithm. The proposed algorithm is tested with image reconstruction of electrical resistance tomography (ERT). Both simulation and experimental results demonstrate that the proposed method can reduce the computational time and improve the noise robustness for the image reconstruction. (paper)
Miniature Laboratory for Detecting Sparse Biomolecules
Lin, Ying; Yu, Nan
2005-01-01
A miniature laboratory system has been proposed for use in the field to detect sparsely distributed biomolecules. By emphasizing concentration and sorting of specimens prior to detection, the underlying system concept would make it possible to attain high detection sensitivities without the need to develop ever more sensitive biosensors. The original purpose of the proposal is to aid the search for signs of life on a remote planet by enabling the detection of specimens as sparse as a few molecules or microbes in a large amount of soil, dust, rocks, water/ice, or other raw sample material. Some version of the system could prove useful on Earth for remote sensing of biological contamination, including agents of biological warfare. Processing in this system would begin with dissolution of the raw sample material in a sample-separation vessel. The solution in the vessel would contain floating microscopic magnetic beads coated with substances that could engage in chemical reactions with various target functional groups that are parts of target molecules. The chemical reactions would cause the targeted molecules to be captured on the surfaces of the beads. By use of a controlled magnetic field, the beads would be concentrated in a specified location in the vessel. Once the beads were thus concentrated, the rest of the solution would be discarded. This procedure would obviate the filtration steps and thereby also eliminate the filter-clogging difficulties of typical prior sample-concentration schemes. For ferrous dust/soil samples, the dissolution would be done first in a separate vessel before the solution is transferred to the microbead-containing vessel.
Sana, Furrukh
2016-06-01
Subsurface reservoir flow channels are characterized by high-permeability values and serve as preferred pathways for fluid propagation. Accurate estimation of their geophysical structures is thus of great importance for the oil industry. The ensemble Kalman filter (EnKF) is a widely used statistical technique for estimating subsurface reservoir model parameters. However, accurate reconstruction of the subsurface geological features with the EnKF is challenging because of the limited measurements available from the wells and the smoothing effects imposed by the \\\\ell _{2} -norm nature of its update step. A new EnKF scheme based on sparse domain representation was introduced by Sana et al. (2015) to incorporate useful prior structural information in the estimation process for efficient recovery of subsurface channels. In this paper, we extend this work in two ways: 1) investigate the effects of incorporating time-lapse seismic data on the channel reconstruction; and 2) explore a Bayesian sparse reconstruction algorithm with the potential ability to reduce the computational requirements. Numerical results suggest that the performance of the new sparse Bayesian based EnKF scheme is enhanced with the availability of seismic measurements, leading to further improvement in the recovery of flow channels structures. The sparse Bayesian approach further provides a computationally efficient framework for enforcing a sparse solution, especially with the possibility of using high sparsity rates through the inclusion of seismic data.
Sajjad, Muhammad; Mehmood, Irfan; Baik, Sung Wook
2015-01-01
Image super-resolution (SR) plays a vital role in medical imaging that allows a more efficient and effective diagnosis process. Usually, diagnosing is difficult and inaccurate from low-resolution (LR) and noisy images. Resolution enhancement through conventional interpolation methods strongly affects the precision of consequent processing steps, such as segmentation and registration. Therefore, we propose an efficient sparse coded image SR reconstruction technique using a trained dictionary. We apply a simple and efficient regularized version of orthogonal matching pursuit (ROMP) to seek the coefficients of sparse representation. ROMP has the transparency and greediness of OMP and the robustness of the L1-minization that enhance the dictionary learning process to capture feature descriptors such as oriented edges and contours from complex images like brain MRIs. The sparse coding part of the K-SVD dictionary training procedure is modified by substituting OMP with ROMP. The dictionary update stage allows simultaneously updating an arbitrary number of atoms and vectors of sparse coefficients. In SR reconstruction, ROMP is used to determine the vector of sparse coefficients for the underlying patch. The recovered representations are then applied to the trained dictionary, and finally, an optimization leads to high-resolution output of high-quality. Experimental results demonstrate that the super-resolution reconstruction quality of the proposed scheme is comparatively better than other state-of-the-art schemes.
Sana, Furrukh; Ravanelli, Fabio; Al-Naffouri, Tareq Y.; Hoteit, Ibrahim
2016-01-01
Subsurface reservoir flow channels are characterized by high-permeability values and serve as preferred pathways for fluid propagation. Accurate estimation of their geophysical structures is thus of great importance for the oil industry. The ensemble Kalman filter (EnKF) is a widely used statistical technique for estimating subsurface reservoir model parameters. However, accurate reconstruction of the subsurface geological features with the EnKF is challenging because of the limited measurements available from the wells and the smoothing effects imposed by the \\ell _{2} -norm nature of its update step. A new EnKF scheme based on sparse domain representation was introduced by Sana et al. (2015) to incorporate useful prior structural information in the estimation process for efficient recovery of subsurface channels. In this paper, we extend this work in two ways: 1) investigate the effects of incorporating time-lapse seismic data on the channel reconstruction; and 2) explore a Bayesian sparse reconstruction algorithm with the potential ability to reduce the computational requirements. Numerical results suggest that the performance of the new sparse Bayesian based EnKF scheme is enhanced with the availability of seismic measurements, leading to further improvement in the recovery of flow channels structures. The sparse Bayesian approach further provides a computationally efficient framework for enforcing a sparse solution, especially with the possibility of using high sparsity rates through the inclusion of seismic data.
Li, Qing; Liang, Steven Y
2018-04-20
Microstructure images of metallic materials play a significant role in industrial applications. To address image degradation problem of metallic materials, a novel image restoration technique based on K-means singular value decomposition (KSVD) and smoothing penalty sparse representation (SPSR) algorithm is proposed in this work, the microstructure images of aluminum alloy 7075 (AA7075) material are used as examples. To begin with, to reflect the detail structure characteristics of the damaged image, the KSVD dictionary is introduced to substitute the traditional sparse transform basis (TSTB) for sparse representation. Then, due to the image restoration, modeling belongs to a highly underdetermined equation, and traditional sparse reconstruction methods may cause instability and obvious artifacts in the reconstructed images, especially reconstructed image with many smooth regions and the noise level is strong, thus the SPSR (here, q = 0.5) algorithm is designed to reconstruct the damaged image. The results of simulation and two practical cases demonstrate that the proposed method has superior performance compared with some state-of-the-art methods in terms of restoration performance factors and visual quality. Meanwhile, the grain size parameters and grain boundaries of microstructure image are discussed before and after they are restored by proposed method.
The HTM Spatial Pooler—A Neocortical Algorithm for Online Sparse Distributed Coding
Directory of Open Access Journals (Sweden)
Yuwei Cui
2017-11-01
Full Text Available Hierarchical temporal memory (HTM provides a theoretical framework that models several key computational principles of the neocortex. In this paper, we analyze an important component of HTM, the HTM spatial pooler (SP. The SP models how neurons learn feedforward connections and form efficient representations of the input. It converts arbitrary binary input patterns into sparse distributed representations (SDRs using a combination of competitive Hebbian learning rules and homeostatic excitability control. We describe a number of key properties of the SP, including fast adaptation to changing input statistics, improved noise robustness through learning, efficient use of cells, and robustness to cell death. In order to quantify these properties we develop a set of metrics that can be directly computed from the SP outputs. We show how the properties are met using these metrics and targeted artificial simulations. We then demonstrate the value of the SP in a complete end-to-end real-world HTM system. We discuss the relationship with neuroscience and previous studies of sparse coding. The HTM spatial pooler represents a neurally inspired algorithm for learning sparse representations from noisy data streams in an online fashion.
The HTM Spatial Pooler-A Neocortical Algorithm for Online Sparse Distributed Coding.
Cui, Yuwei; Ahmad, Subutai; Hawkins, Jeff
2017-01-01
Hierarchical temporal memory (HTM) provides a theoretical framework that models several key computational principles of the neocortex. In this paper, we analyze an important component of HTM, the HTM spatial pooler (SP). The SP models how neurons learn feedforward connections and form efficient representations of the input. It converts arbitrary binary input patterns into sparse distributed representations (SDRs) using a combination of competitive Hebbian learning rules and homeostatic excitability control. We describe a number of key properties of the SP, including fast adaptation to changing input statistics, improved noise robustness through learning, efficient use of cells, and robustness to cell death. In order to quantify these properties we develop a set of metrics that can be directly computed from the SP outputs. We show how the properties are met using these metrics and targeted artificial simulations. We then demonstrate the value of the SP in a complete end-to-end real-world HTM system. We discuss the relationship with neuroscience and previous studies of sparse coding. The HTM spatial pooler represents a neurally inspired algorithm for learning sparse representations from noisy data streams in an online fashion.
Adaptive structured dictionary learning for image fusion based on group-sparse-representation
Yang, Jiajie; Sun, Bin; Luo, Chengwei; Wu, Yuzhong; Xu, Limei
2018-04-01
Dictionary learning is the key process of sparse representation which is one of the most widely used image representation theories in image fusion. The existing dictionary learning method does not use the group structure information and the sparse coefficients well. In this paper, we propose a new adaptive structured dictionary learning algorithm and a l1-norm maximum fusion rule that innovatively utilizes grouped sparse coefficients to merge the images. In the dictionary learning algorithm, we do not need prior knowledge about any group structure of the dictionary. By using the characteristics of the dictionary in expressing the signal, our algorithm can automatically find the desired potential structure information that hidden in the dictionary. The fusion rule takes the physical meaning of the group structure dictionary, and makes activity-level judgement on the structure information when the images are being merged. Therefore, the fused image can retain more significant information. Comparisons have been made with several state-of-the-art dictionary learning methods and fusion rules. The experimental results demonstrate that, the dictionary learning algorithm and the fusion rule both outperform others in terms of several objective evaluation metrics.
The Nonlocal Sparse Reconstruction Algorithm by Similarity Measurement with Shearlet Feature Vector
Directory of Open Access Journals (Sweden)
Wu Qidi
2014-01-01
Full Text Available Due to the limited accuracy of conventional methods with image restoration, the paper supplied a nonlocal sparsity reconstruction algorithm with similarity measurement. To improve the performance of restoration results, we proposed two schemes to dictionary learning and sparse coding, respectively. In the part of the dictionary learning, we measured the similarity between patches from degraded image by constructing the Shearlet feature vector. Besides, we classified the patches into different classes with similarity and trained the cluster dictionary for each class, by cascading which we could gain the universal dictionary. In the part of sparse coding, we proposed a novel optimal objective function with the coding residual item, which can suppress the residual between the estimate coding and true sparse coding. Additionally, we show the derivation of self-adaptive regularization parameter in optimization under the Bayesian framework, which can make the performance better. It can be indicated from the experimental results that by taking full advantage of similar local geometric structure feature existing in the nonlocal patches and the coding residual suppression, the proposed method shows advantage both on visual perception and PSNR compared to the conventional methods.
A Sparse Modulation Signal Bispectrum Analysis Method for Rolling Element Bearing Diagnosis
Directory of Open Access Journals (Sweden)
Guangbin Wang
2018-01-01
Full Text Available Modulation signal bispectrum (MSB analysis is an effective method to obtain the fault frequency for rolling bearing, but harmonics make fault frequency dense and even frequency aliasing. Carrier frequency of bearing is generally determined by its structure and inherent characteristics and changes with the increase of the damage degree, so it is hard to be accurately found. To solve these problems, this paper proposes a sparse modulation signal bispectrum analysis method. Firstly the vibration signal is demodulated by MSB analysis and its bispectrum is obtained. After the frequency domain filtering, the carrier frequency is computed based on the characteristics of energy concentration at the carrier frequency on MSB. By shift-frequency MSB (SF-MSB, the carrier frequency is moved to the coordinate origin, the entire MSB is shifted for the same distance, and SF-MSB is obtained. At last, the bispectrum is shifted to the frequency zero point and diagonal slices are performed to obtain a sparse representation of MSB. Experimental results show that sparse MSB (S-MSB method can not only eliminate the interference of harmonic frequency, but also make the extracted characteristic frequency of fault more obvious.
DEFF Research Database (Denmark)
Sturm, Bob L.; Noorzad, Pardis
2012-01-01
A recent system combining sparse representation classification (SRC) and a perceptually-based acoustic feature (ATM) \\cite{Panagakis2009,Panagakis2009b,Panagakis2010c}, outperforms by a significant margin the state of the art in music genre recognition, e.g., \\cite{Bergstra2006}. With genre so...... to reproduce the results of \\cite{Panagakis2009}. First, we find that classification results are consistent for features extracted from different analyses. Second, we find that SRC accuracy improves when we pose the sparse representation problem with inequality constraints. Finally, we find that only when we...